Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p53360 Brassica napus HOM05D000052 ORTHO05D000046 9.5e-23 109.4 58 100.0
BcaC07g42323 Brassica carinata HOM05D010813 ORTHO05D012593 8.6e-16 86.3 54 87.0
AL1G11670 Arabidopsis lyrata HOM05D000052 ORTHO05D000046 8.1e-14 79.7 54 79.6
AT1G02335 Arabidopsis thaliana HOM05D000052 ORTHO05D000046 2.3e-13 78.2 54 77.8
CARHR001650 Cardamine hirsuta HOM05D000052 ORTHO05D000046 2.3e-13 78.2 54 77.8
BolC5t28892H Brassica oleracea HOM05D000052 ORTHO05D000046 4.0e-13 77.4 54 75.9
Carub.0001s0138 Capsella rubella HOM05D000052 ORTHO05D000046 6.8e-13 76.6 54 75.9
Sp1g01420 Schrenkiella parvula HOM05D000052 ORTHO05D000046 6.8e-13 76.6 54 75.9
BcaC05g24613 Brassica carinata HOM05D000052 ORTHO05D000046 8.9e-13 76.3 47 87.2
A10p01070 Brassica napus HOM05D000052 ORTHO05D000046 8.9e-13 76.3 47 87.2
C05p01110 Brassica napus HOM05D000052 ORTHO05D000046 8.9e-13 76.3 47 87.2
Aa31LG1G10160 Aethionema arabicum HOM05D000052 ORTHO05D000046 1.2e-12 75.9 54 75.9
A09p68820 Brassica napus HOM05D000052 ORTHO05D000046 1.3e-11 72.4 53 71.7
BraA09t42220Z Brassica rapa HOM05D000052 ORTHO05D000046 1.3e-11 72.4 53 71.7
Thhalv10008737m.g Eutrema salsugineum HOM05D000052 ORTHO05D000046 2.2e-11 71.6 54 70.4
Aa31LG1G10190 Aethionema arabicum HOM05D000052 ORTHO05D000046 1.4e-10 68.9 54 68.5
Aqoxy2G00328 Aquilegia oxysepala HOM05D000052 ORTHO05D000046 6.0e-09 63.5 54 61.1
QL09p037458 Quercus lobata HOM05D000052 ORTHO05D000046 7.8e-09 63.2 53 60.4
THA.LOC104801333 Tarenaya hassleriana HOM05D000052 ORTHO05D000046 1.3e-08 62.4 53 60.4
Nitab4.5_0000081g0120 Nicotiana tabacum HOM05D000052 ORTHO05D000046 2.3e-08 61.6 54 59.3
Nitab4.5_0004706g0010 Nicotiana tabacum HOM05D000052 ORTHO05D000046 3.9e-08 60.8 54 59.3
Haze_05168 Corylus avellana HOM05D000052 ORTHO05D000046 5.1e-08 60.5 53 56.6
Gohir.A08G035300 Gossypium hirsutum HOM05D000052 ORTHO05D000046 5.1e-08 60.5 53 58.5
Gohir.D08G045900 Gossypium hirsutum HOM05D000052 ORTHO05D000046 5.1e-08 60.5 53 58.5
Gorai.004G044700 Gossypium raimondii HOM05D000052 ORTHO05D000046 5.1e-08 60.5 53 58.5
Cfa004928 Carpinus fangiana HOM05D000052 ORTHO05D000046 8.6e-08 59.7 53 56.6
Psat6g156520 Pisum sativum HOM05D000052 ORTHO05D000046 8.6e-08 59.7 54 57.4
Ca_10215_v3 Cicer arietinum L. HOM05D000052 ORTHO05D000046 1.1e-07 59.3 54 57.4
COL.COLO4_05475 Corchorus olitorius HOM05D000052 ORTHO05D000046 1.1e-07 59.3 54 55.6
Manes.01G236500 Manihot esculenta HOM05D000052 ORTHO05D000046 1.1e-07 59.3 53 56.6
Peaxi162Scf00035g00414 Petunia axillaris HOM05D000052 ORTHO05D000046 1.1e-07 59.3 54 55.6
CiPaw.14G110200 Carya illinoinensis HOM05D000052 ORTHO05D000046 1.9e-07 58.5 54 59.3
Lalb_Chr02g0147391 Lupinus albus HOM05D000052 ORTHO05D000046 1.9e-07 58.5 54 59.3
Lalb_Chr02g0147301 Lupinus albus HOM05D000052 ORTHO05D000046 2.5e-07 58.2 53 52.8
Medtr1g085140 Medicago truncatula HOM05D000052 ORTHO05D000046 2.5e-07 58.2 54 55.6
Nn4g25271 Nelumbo nucifera HOM05D000052 ORTHO05D000046 2.5e-07 58.2 54 57.4
Peaxi162Scf00194g00424 Petunia axillaris HOM05D000052 ORTHO05D000046 2.5e-07 58.2 54 55.6
TPR.G34900 Trifolium pratense HOM05D000052 ORTHO05D000046 2.5e-07 58.2 54 55.6
Ciclev10022159m.g Citrus clementina HOM05D000052 ORTHO05D000046 3.3e-07 57.8 53 54.7
Migut.B00905 Erythranthe guttata HOM05D000052 ORTHO05D000046 3.3e-07 57.8 57 52.6
Peaxi162Scf00194g00518 Petunia axillaris HOM05D000052 ORTHO05D000046 3.3e-07 57.8 54 55.6
Potri.002G184900 Populus trichocarpa HOM05D000052 ORTHO05D000046 3.3e-07 57.8 53 54.7
CAN.G1379.40 Capsicum annuum HOM05D000052 ORTHO05D000046 4.3e-07 57.4 54 55.6
Thhalv10006227m.g Eutrema salsugineum HOM05D000052 ORTHO05D000046 4.3e-07 57.4 53 54.7
VMungo0720G0615 Vigna mungo HOM05D000052 ORTHO05D000046 4.3e-07 57.4 54 57.4
AT3G62020 Arabidopsis thaliana HOM05D000052 ORTHO05D000046 5.6e-07 57.0 53 52.8
Lj5g0001061 Lotus japonicus HOM05D000052 ORTHO05D000046 5.6e-07 57.0 54 51.9
Sp5g01340 Schrenkiella parvula HOM05D000052 ORTHO05D000046 5.6e-07 57.0 53 52.8
Atru.chr5.833 Acer truncatum HOM05D000052 ORTHO05D000046 7.3e-07 56.6 53 52.8
CiPaw.08G124600 Carya illinoinensis HOM05D000052 ORTHO05D000046 7.3e-07 56.6 54 57.4
Glyma.10G139800 Glycine max HOM05D000052 ORTHO05D000046 7.3e-07 56.6 53 49.1
THA.LOC104817411 Tarenaya hassleriana HOM05D000052 ORTHO05D000046 7.3e-07 56.6 53 54.7
A09p54090 Brassica napus HOM05D000052 ORTHO05D000046 9.5e-07 56.2 53 52.8
BraA09t40822Z Brassica rapa HOM05D000052 ORTHO05D000046 9.5e-07 56.2 53 52.8
MBI18_g03862_MAGBIO Magnolia biondii HOM05D000052 ORTHO05D000046 9.5e-07 56.2 54 55.6
MBI18_g28927_MAGBIO Magnolia biondii HOM05D000052 ORTHO05D000046 9.5e-07 56.2 54 57.4
Manes.08G106400 Manihot esculenta HOM05D000052 ORTHO05D000046 9.5e-07 56.2 54 57.4
Thecc.05G331100 Theobroma cacao HOM05D000052 ORTHO05D000046 9.5e-07 56.2 54 55.6
TWI23G1055 Tripterygium wilfordii HOM05D000052 ORTHO05D000046 9.5e-07 56.2 54 53.7
GSVIVG01028222001 Vitis vinifera HOM05D000052 ORTHO05D000046 9.5e-07 56.2 53 52.8
AUR62004047 Chenopodium quinoa HOM05D000052 ORTHO05D000046 1.2e-06 55.8 54 55.6
Eucgr.H01344 Eucalyptus grandis HOM05D000052 ORTHO05D000046 1.2e-06 55.8 54 57.4
FAN02G1487 Fragaria x ananassa HOM05D000052 ORTHO05D000046 1.2e-06 55.8 52 53.8
Glyma.10G139700 Glycine max HOM05D000052 ORTHO05D000046 1.2e-06 55.8 53 49.1
Glyma.10G141700 Glycine max HOM05D000052 ORTHO05D000046 1.2e-06 55.8 54 55.6
Gohir.A08G122300 Gossypium hirsutum HOM05D000052 ORTHO05D000046 1.2e-06 55.8 53 54.7
Gohir.D08G143600 Gossypium hirsutum HOM05D000052 ORTHO05D000046 1.2e-06 55.8 53 54.7
Gorai.004G148000 Gossypium raimondii HOM05D000052 ORTHO05D000046 1.2e-06 55.8 53 54.7
Oeu025677.1 Olea europaea HOM05D000052 ORTHO05D000046 1.2e-06 55.8 54 51.9
Phvul.007G206600 Phaseolus vulgaris HOM05D000052 ORTHO05D000046 1.2e-06 55.8 54 55.6
PGR031G1534 Punica granatum HOM05D000052 ORTHO05D000046 1.2e-06 55.8 54 55.6
TWI59G1277 Tripterygium wilfordii HOM05D000052 ORTHO05D000046 1.2e-06 55.8 54 53.7
Cpa.g.c36235 Carica papaya HOM05D000052 ORTHO05D000046 1.6e-06 55.5 53 52.8
Cpa.g.sc576.2 Carica papaya HOM05D000052 ORTHO05D000046 1.6e-06 55.5 52 53.8
COL.COLO4_23097 Corchorus olitorius HOM05D000052 ORTHO05D000046 1.6e-06 55.5 53 54.7
Duzib138G1350 Durio zibethinus HOM05D000052 ORTHO05D000046 1.6e-06 55.5 53 52.8
Eucgr.A00990 Eucalyptus grandis HOM05D000052 ORTHO05D000046 1.6e-06 55.5 53 52.8
Oeu034920.1 Olea europaea HOM05D000052 ORTHO05D000046 1.6e-06 55.5 54 55.6
PGSC0003DMG400018275 Solanum tuberosum HOM05D000052 ORTHO05D000046 1.6e-06 55.5 54 51.9
TWI56G0193 Tripterygium wilfordii HOM05D000052 ORTHO05D000046 1.6e-06 55.5 54 55.6
Aa31LG10G16000 Aethionema arabicum HOM05D000052 ORTHO05D000046 2.1e-06 55.1 53 52.8
AL5G44640 Arabidopsis lyrata HOM05D000052 ORTHO05D000046 2.1e-06 55.1 53 50.9
CAN.G1379.41 Capsicum annuum HOM05D000052 ORTHO05D000046 2.1e-06 55.1 54 51.9
Dinv24528 Davidia involucrata HOM05D000052 ORTHO05D000046 2.1e-06 55.1 54 53.7
Glyma.19G224300 Glycine max HOM05D000052 ORTHO05D000046 2.1e-06 55.1 54 57.4
SalBow4G1804 Salvia bowleyana HOM05D000052 ORTHO05D000046 2.1e-06 55.1 54 53.7
TAR362G1051 Trochodendron aralioides HOM05D000052 ORTHO05D000046 2.1e-06 55.1 54 55.6
TAR633G2238 Trochodendron aralioides HOM05D000052 ORTHO05D000046 2.1e-06 55.1 54 53.7
Carub.0005s2877 Capsella rubella HOM05D000052 ORTHO05D000046 2.8e-06 54.7 53 50.9
Glyma.03G227400 Glycine max HOM05D000052 ORTHO05D000046 2.8e-06 54.7 54 55.6
Glyma.20G090200 Glycine max HOM05D000052 ORTHO05D000046 2.8e-06 54.7 54 55.6
Manes.05G006700 Manihot esculenta HOM05D000052 ORTHO05D000046 2.8e-06 54.7 53 50.9
Potri.014G110400 Populus trichocarpa HOM05D000052 ORTHO05D000046 2.8e-06 54.7 53 52.8
Solyc01g102400.3 Solanum lycopersicum HOM05D000052 ORTHO05D000046 2.8e-06 54.7 54 51.9
ATR0796G224 Amborella trichopoda HOM05D000052 ORTHO05D000046 3.6e-06 54.3 53 54.7
C08p36980 Brassica napus HOM05D000052 ORTHO05D000046 3.6e-06 54.3 53 50.9
BolC8t51275H Brassica oleracea HOM05D000052 ORTHO05D000046 3.6e-06 54.3 53 50.9
Os05g0277500 Oryza sativa ssp. japonica HOM05D000052 ORTHO05D000046 3.6e-06 54.3 53 54.7
Solyc01g102390.4 Solanum lycopersicum HOM05D000052 ORTHO05D000046 3.6e-06 54.3 54 51.9
Sopen01g044840 Solanum pennellii HOM05D000052 ORTHO05D000046 3.6e-06 54.3 54 51.9
PGSC0003DMG400018276 Solanum tuberosum HOM05D000052 ORTHO05D000046 3.6e-06 54.3 54 51.9
Thecc.01G327900 Theobroma cacao HOM05D000052 ORTHO05D000046 3.6e-06 54.3 53 52.8
GSVIVG01031351001 Vitis vinifera HOM05D000052 ORTHO05D000046 3.6e-06 54.3 54 53.7
Aqoxy2G02396 Aquilegia oxysepala HOM05D000052 ORTHO05D000046 4.7e-06 53.9 54 55.6
Cc02_g36950 Coffea canephora HOM05D000052 ORTHO05D000046 4.7e-06 53.9 54 51.9
FvH4_6g08730 Fragaria vesca HOM05D000052 ORTHO05D000046 4.7e-06 53.9 52 51.9
FAN14G0691 Fragaria x ananassa HOM05D000052 ORTHO05D000046 4.7e-06 53.9 52 51.9
MD04G1184000 Malus domestica HOM05D000052 ORTHO05D000046 4.7e-06 53.9 52 55.8
MD12G1197400 Malus domestica HOM05D000052 ORTHO05D000046 4.7e-06 53.9 52 55.8
Nitab4.5_0000094g0090 Nicotiana tabacum HOM05D000052 ORTHO05D000046 4.7e-06 53.9 54 50.0
Nitab4.5_0010734g0020 Nicotiana tabacum HOM05D000052 ORTHO05D000046 4.7e-06 53.9 54 50.0
Os01g0249200 Oryza sativa ssp. japonica HOM05D000052 ORTHO05D000046 4.7e-06 53.9 53 49.1
Rhsim05G0125700 Rhododendron simsii HOM05D000052 ORTHO05D000046 4.7e-06 53.9 52 53.8
SGA_v2.0_scaffold131G34492 Striga asiatica HOM05D000052 ORTHO05D000046 4.7e-06 53.9 54 53.7
Actinidia01654 Actinidia chinensis HOM05D000052 ORTHO05D000046 6.2e-06 53.5 45 62.2
arahy.Tifrunner.gnm1.ann1.12AD17 Arachis hypogaea HOM05D000052 ORTHO05D000046 6.2e-06 53.5 54 51.9
arahy.Tifrunner.gnm1.ann1.86PWT8 Arachis hypogaea HOM05D000052 ORTHO05D000046 6.2e-06 53.5 54 51.9
arahy.Tifrunner.gnm1.ann1.B6P3TA Arachis hypogaea HOM05D000052 ORTHO05D000046 6.2e-06 53.5 54 51.9
CARHR172370 Cardamine hirsuta HOM05D000052 ORTHO05D000046 6.2e-06 53.5 53 50.9
CiPaw.12G021800 Carya illinoinensis HOM05D000052 ORTHO05D000046 6.2e-06 53.5 51 49.0
MELO3C004143.2 Cucumis melo HOM05D000052 ORTHO05D000046 6.2e-06 53.5 54 53.7
Nitab4.5_0002058g0110 Nicotiana tabacum HOM05D000052 ORTHO05D000046 6.2e-06 53.5 54 50.0
Oeu000177.1 Olea europaea HOM05D000052 ORTHO05D000046 6.2e-06 53.5 52 53.8
QL03p011376 Quercus lobata HOM05D000052 ORTHO05D000046 6.2e-06 53.5 53 52.8
Sed0009376 Sechium edule HOM05D000052 ORTHO05D000046 6.2e-06 53.5 54 51.9
Zm00001eb301380 Zea mays HOM05D000052 ORTHO05D000046 6.2e-06 53.5 53 54.7
arahy.Tifrunner.gnm1.ann1.667AB5 Arachis hypogaea HOM05D000052 ORTHO05D000046 8.1e-06 53.1 52 48.1
Cfa004398 Carpinus fangiana HOM05D000052 ORTHO05D000046 8.1e-06 53.1 54 53.7
Sopen01g044850 Solanum pennellii HOM05D000052 ORTHO05D000046 8.1e-06 53.1 54 50.0
TPR.G3056 Trifolium pratense HOM05D000052 ORTHO05D000046 8.1e-06 53.1 53 43.4


User provided reference genes

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