Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p53300 Brassica napus HOM05D004144 ORTHO05D004902 1.4e-159 566.2 282 100.0
BolC8t52845H Brassica oleracea HOM05D004144 ORTHO05D004902 1.4e-156 556.2 287 97.6
BcaC07g42390 Brassica carinata HOM05D004144 ORTHO05D004902 1.6e-155 552.7 287 96.9
A09p68730 Brassica napus HOM05D004144 ORTHO05D004902 8.7e-154 547.0 287 95.5
BraA09t42212Z Brassica rapa HOM05D004144 ORTHO05D004902 5.3e-151 537.7 295 92.5
Sp1g01500 Schrenkiella parvula HOM05D004144 ORTHO05D004902 6.0e-139 497.7 293 88.1
CARHR001740 Cardamine hirsuta HOM05D004144 ORTHO05D004902 3.0e-138 495.4 294 88.1
Thhalv10008363m.g Eutrema salsugineum HOM05D004144 ORTHO05D004902 3.3e-137 491.9 293 87.4
Carub.0001s0149 Capsella rubella HOM05D004144 ORTHO05D004902 7.4e-137 490.7 290 88.3
BcaC07g42317 Brassica carinata HOM05D004144 ORTHO05D004902 9.6e-137 490.3 294 87.1
AL1G11770 Arabidopsis lyrata HOM05D004144 ORTHO05D004902 1.3e-136 490.0 290 88.3
A08p37680 Brassica napus HOM05D004144 ORTHO05D004902 1.3e-136 490.0 290 90.7
C03p00140 Brassica napus HOM05D004144 ORTHO05D004902 1.3e-136 490.0 289 90.0
BraA08t35664Z Brassica rapa HOM05D004144 ORTHO05D004902 1.3e-136 490.0 290 90.7
AT1G02410 Arabidopsis thaliana HOM05D004144 ORTHO05D004902 2.6e-134 482.3 290 86.6
BcaB01g06136 Brassica carinata HOM05D004144 ORTHO05D004902 3.8e-133 478.4 288 88.5
BolC3t12580H Brassica oleracea HOM05D004144 ORTHO05D004902 3.8e-133 478.4 288 88.5
A10p01190 Brassica napus HOM05D004144 ORTHO05D004902 2.5e-129 465.7 293 82.6
BcaC05g24628 Brassica carinata HOM05D004144 ORTHO05D004902 7.4e-129 464.2 289 83.4
Aa31LG1G10050 Aethionema arabicum HOM05D004144 ORTHO05D004902 2.0e-126 456.1 290 82.8
BraA10t42397Z Brassica rapa HOM05D004144 ORTHO05D004902 3.2e-124 448.7 298 79.5
BolC5t28904H Brassica oleracea HOM05D004144 ORTHO05D004902 9.3e-124 447.2 294 80.3
BcaB03g13513 Brassica carinata HOM05D004144 ORTHO05D004902 6.3e-120 434.5 290 80.3
BcaB01g06133 Brassica carinata HOM05D004144 ORTHO05D004902 8.2e-120 434.1 291 81.1
C05p01210 Brassica napus HOM05D004144 ORTHO05D004902 2.4e-119 432.6 285 80.7
C04p03290 Brassica napus HOM05D004144 ORTHO05D004902 7.9e-115 417.5 256 86.7
THA.LOC104815917 Tarenaya hassleriana HOM05D004144 ORTHO05D004902 5.5e-108 394.8 302 70.9
BcaNung06859 Brassica carinata HOM05D004144 ORTHO05D004902 4.1e-103 378.6 218 88.1
MD07G1041100 Malus domestica HOM05D004144 ORTHO05D004902 1.4e-95 353.6 277 66.8
Lsat_1_v5_gn_3_67200 Lactuca sativa HOM05D004144 ORTHO05D004902 4.1e-95 352.1 201 84.1
CiPaw.04G048600 Carya illinoinensis HOM05D004144 ORTHO05D004902 1.2e-94 350.5 285 65.3
Atru.chr1.1960 Acer truncatum HOM05D004144 ORTHO05D004902 1.6e-94 350.1 280 66.8
Lalb_Chr18g0053671 Lupinus albus HOM05D004144 ORTHO05D004902 2.0e-94 349.7 286 66.4
SGA_v2.0_scaffold108G30989 Striga asiatica HOM05D004144 ORTHO05D004902 2.0e-94 349.7 275 68.4
Lalb_Chr20g0117051 Lupinus albus HOM05D004144 ORTHO05D004902 3.5e-94 349.0 286 66.8
SalBow3G3518 Salvia bowleyana HOM05D004144 ORTHO05D004902 3.5e-94 349.0 192 87.5
Hma1.2p1_0034F.1_g021300 Hydrangea macrophylla HOM05D004144 ORTHO05D004902 4.5e-94 348.6 210 81.9
Prupe.3G281100 Prunus persica HOM05D004144 ORTHO05D004902 4.5e-94 348.6 271 66.8
Prupe.7G012700 Prunus persica HOM05D004144 ORTHO05D004902 7.7e-94 347.8 271 67.5
ECA238G1245 Erigeron canadensis HOM05D004144 ORTHO05D004902 1.0e-93 347.4 197 84.3
RcHm_v2.0_Chr3g0452351 Rosa chinensis HOM05D004144 ORTHO05D004902 2.2e-93 346.3 213 80.8
MSTRG.15643 Avicennia marina HOM05D004144 ORTHO05D004902 3.8e-93 345.5 281 65.8
Cc07_g12990 Coffea canephora HOM05D004144 ORTHO05D004902 3.8e-93 345.5 222 77.5
Ciclev10002120m.g Citrus clementina HOM05D004144 ORTHO05D004902 5.0e-93 345.1 201 84.1
MD02G1272100 Malus domestica HOM05D004144 ORTHO05D004902 5.0e-93 345.1 278 65.1
CSS0050506 Camellia sinensis var. sinensis HOM05D004144 ORTHO05D004902 1.1e-92 344.0 192 87.5
RcHm_v2.0_Chr1g0359421 Rosa chinensis HOM05D004144 ORTHO05D004902 1.5e-92 343.6 213 80.3
Glyma.18G043100 Glycine max HOM05D004144 ORTHO05D004902 1.9e-92 343.2 284 64.4
HanXRQChr16g0532751 Helianthus annuus HOM05D004144 ORTHO05D004902 9.4e-92 340.9 267 65.5
Hund18774 Selenicereus undatus HOM05D004144 ORTHO05D004902 1.2e-91 340.5 192 85.9
arahy.Tifrunner.gnm1.ann1.87SQNY Arachis hypogaea HOM05D004144 ORTHO05D004902 2.1e-91 339.7 212 79.7
arahy.Tifrunner.gnm1.ann1.U9M4C7 Arachis hypogaea HOM05D004144 ORTHO05D004902 2.1e-91 339.7 212 79.7
EL10Ac1g00114 Beta vulgaris HOM05D004144 ORTHO05D004902 2.1e-91 339.7 189 86.8
Peaxi162Scf00525g00621 Petunia axillaris HOM05D004144 ORTHO05D004902 2.7e-91 339.3 194 84.0
PGR102G3261 Punica granatum HOM05D004144 ORTHO05D004902 2.7e-91 339.3 226 76.5
Sc18g0000970 Simmondsia chinensis HOM05D004144 ORTHO05D004902 3.6e-91 339.0 271 65.7
Lj4A255T25 Lonicera japonica HOM05D004144 ORTHO05D004902 4.7e-91 338.6 200 83.5
Eucgr.J01628 Eucalyptus grandis HOM05D004144 ORTHO05D004902 6.1e-91 338.2 225 75.1
vmacro18517 Vaccinium macrocarpon HOM05D004144 ORTHO05D004902 6.1e-91 338.2 192 84.4
PGR042G3225 Punica granatum HOM05D004144 ORTHO05D004902 8.0e-91 337.8 226 76.5
TAR629G3342 Trochodendron aralioides HOM05D004144 ORTHO05D004902 8.0e-91 337.8 284 64.8
Phvul.001G227800 Phaseolus vulgaris HOM05D004144 ORTHO05D004902 1.0e-90 337.4 269 64.7
unitig_32.g10726 Utricularia gibba HOM05D004144 ORTHO05D004902 1.0e-90 337.4 194 84.5
Glyma.11G213600 Glycine max HOM05D004144 ORTHO05D004902 2.3e-90 336.3 284 64.1
Sed0013521 Sechium edule HOM05D004144 ORTHO05D004902 2.3e-90 336.3 216 78.7
TPR.G26653 Trifolium pratense HOM05D004144 ORTHO05D004902 3.0e-90 335.9 189 86.2
Migut.H02241 Erythranthe guttata HOM05D004144 ORTHO05D004902 4.0e-90 335.5 183 89.1
Lj6g0015186 Lotus japonicus HOM05D004144 ORTHO05D004902 4.0e-90 335.5 192 84.9
CAN.G616.15 Capsicum annuum HOM05D004144 ORTHO05D004902 5.2e-90 335.1 209 78.5
VMungo1383G1060 Vigna mungo HOM05D004144 ORTHO05D004902 5.2e-90 335.1 192 84.9
Sopen05g007260 Solanum pennellii HOM05D004144 ORTHO05D004902 6.8e-90 334.7 209 78.0
Psat5g142040 Pisum sativum HOM05D004144 ORTHO05D004902 2.0e-89 333.2 192 83.3
Sed0015810 Sechium edule HOM05D004144 ORTHO05D004902 2.0e-89 333.2 197 83.2
Atru.chr4.1444 Acer truncatum HOM05D004144 ORTHO05D004902 4.4e-89 332.0 228 74.1
MELO3C017589.2 Cucumis melo HOM05D004144 ORTHO05D004902 4.4e-89 332.0 212 79.2
Nitab4.5_0013309g0010 Nicotiana tabacum HOM05D004144 ORTHO05D004902 4.4e-89 332.0 208 77.9
ClCG07G009570 Citrullus lanatus HOM05D004144 ORTHO05D004902 7.5e-89 331.3 246 72.4
Gorai.001G122400 Gossypium raimondii HOM05D004144 ORTHO05D004902 7.5e-89 331.3 216 77.8
Manes.16G049900 Manihot esculenta HOM05D004144 ORTHO05D004902 7.5e-89 331.3 189 84.7
CDE04G3693 Ceratophyllum demersum HOM05D004144 ORTHO05D004902 9.8e-89 330.9 271 64.6
Medtr3g053650 Medicago truncatula HOM05D004144 ORTHO05D004902 1.3e-88 330.5 287 61.3
Gohir.D07G114100 Gossypium hirsutum HOM05D004144 ORTHO05D004902 2.2e-88 329.7 216 77.3
Cfa007770 Carpinus fangiana HOM05D004144 ORTHO05D004902 3.7e-88 328.9 286 62.9
Gohir.A11G203400 Gossypium hirsutum HOM05D004144 ORTHO05D004902 3.7e-88 328.9 216 76.9
Oeu062160.1 Olea europaea HOM05D004144 ORTHO05D004902 8.3e-88 327.8 232 70.3
Ca_17077_v3 Cicer arietinum L. HOM05D004144 ORTHO05D004902 1.1e-87 327.4 246 69.5
Nn1g04486 Nelumbo nucifera HOM05D004144 ORTHO05D004902 1.1e-87 327.4 195 83.1
Gohir.A07G110500 Gossypium hirsutum HOM05D004144 ORTHO05D004902 1.8e-87 326.6 184 87.0
MBI16_g12479_MAGBIO Magnolia biondii HOM05D004144 ORTHO05D004902 2.4e-87 326.2 241 69.3
vmacro19339 Vaccinium macrocarpon HOM05D004144 ORTHO05D004902 5.4e-87 325.1 315 58.7
PSO170G2172 Papaver somniferum HOM05D004144 ORTHO05D004902 1.2e-86 323.9 264 65.2
Haze_14304 Corylus avellana HOM05D004144 ORTHO05D004902 1.6e-86 323.6 309 59.2
Duzib170G0191 Durio zibethinus HOM05D004144 ORTHO05D004902 2.0e-86 323.2 281 61.6
Thecc.09G283000 Theobroma cacao HOM05D004144 ORTHO05D004902 2.7e-86 322.8 176 89.2
SGA_v2.0_scaffold2G00964 Striga asiatica HOM05D004144 ORTHO05D004902 1.3e-85 320.5 279 65.2
FAN06G4796 Fragaria x ananassa HOM05D004144 ORTHO05D004902 5.0e-85 318.5 273 64.5
FAN01G2657 Fragaria x ananassa HOM05D004144 ORTHO05D004902 8.5e-85 317.8 259 66.0
FAN10G4152 Fragaria x ananassa HOM05D004144 ORTHO05D004902 1.1e-84 317.4 259 66.0
FAN10G1720 Fragaria x ananassa HOM05D004144 ORTHO05D004902 1.9e-84 316.6 203 77.3
TWI23G0771 Tripterygium wilfordii HOM05D004144 ORTHO05D004902 1.9e-84 316.6 216 73.1
COL.COLO4_19858 Corchorus olitorius HOM05D004144 ORTHO05D004902 5.5e-84 315.1 317 57.1
ATR0626G272 Amborella trichopoda HOM05D004144 ORTHO05D004902 9.4e-84 314.3 189 79.9
arahy.Tifrunner.gnm1.ann1.F8HJNJ Arachis hypogaea HOM05D004144 ORTHO05D004902 1.6e-83 313.5 266 63.2
GSVIVG01024421001 Vitis vinifera HOM05D004144 ORTHO05D004902 2.1e-83 313.2 181 83.4
Zm00001eb055360 Zea mays HOM05D004144 ORTHO05D004902 2.7e-83 312.8 182 80.8
CsaV3_UNG144100 Cucumis sativus L. HOM05D004144 ORTHO05D004902 6.1e-83 311.6 286 60.5
HPP92_002286 Vanilla planifolia HOM05D004144 ORTHO05D004902 8.0e-83 311.2 180 83.3
Potri.001G078500 Populus trichocarpa HOM05D004144 ORTHO05D004902 1.8e-82 310.1 166 89.8
Os03g0718600 Oryza sativa ssp. japonica HOM05D004144 ORTHO05D004902 5.2e-82 308.5 179 80.4
Aqoxy3G04002 Aquilegia oxysepala HOM05D004144 ORTHO05D004902 8.8e-82 307.8 189 78.8
Duzib168G0342 Durio zibethinus HOM05D004144 ORTHO05D004902 2.0e-81 306.6 221 71.9
SEGI_01185 Sequoiadendron giganteum HOM05D004144 ORTHO05D004902 2.0e-81 306.6 214 71.5
CsaV3_4G004740 Cucumis sativus L. HOM05D004144 ORTHO05D004902 2.6e-81 306.2 242 66.5
CiPaw.03G077800 Carya illinoinensis HOM05D004144 ORTHO05D004902 4.4e-81 305.4 268 63.1
Oeu048969.2 Olea europaea HOM05D004144 ORTHO05D004902 2.4e-79 299.7 302 55.6
SMO169G0145 Selaginella moellendorffii HOM05D004144 ORTHO05D004902 1.2e-75 287.3 180 75.6
Actinidia28789 Actinidia chinensis HOM05D004144 ORTHO05D004902 4.7e-75 285.4 181 79.0
Solyc05g012440.4 Solanum lycopersicum HOM05D004144 ORTHO05D004902 6.1e-75 285.0 156 86.5
PSO782G2695 Papaver somniferum HOM05D004144 ORTHO05D004902 1.4e-74 283.9 151 90.1
Mapoly0070s0059 Marchantia polymorpha HOM05D004144 ORTHO05D004902 2.0e-73 280.0 229 62.4
Dinv19068 Davidia involucrata HOM05D004144 ORTHO05D000107 3.4e-73 279.3 146 90.4
Lj2A513G59 Lonicera japonica HOM05D004144 ORTHO05D004902 3.4e-73 279.3 189 74.6
FAN03G0820 Fragaria x ananassa HOM05D004144 ORTHO05D004902 2.9e-72 276.2 149 88.6
Medtr3g064810 Medicago truncatula HOM05D004144 ORTHO05D004902 1.1e-71 274.2 187 74.9
AagrBONN_evm.TU.Sc2ySwM_228.342 Anthoceros agrestis HOM05D004144 ORTHO05D004902 2.8e-67 259.6 189 68.8
CBR_g51986 Chara braunii HOM05D004144 ORTHO05D004902 1.4e-66 257.3 188 65.4
Sabra01G0055800 Salix brachista HOM05D004144 ORTHO05D004902 3.1e-66 256.1 437 41.2
AUR62023515 Chenopodium quinoa HOM05D004144 ORTHO05D004902 1.4e-63 247.3 177 70.1
Rhsim08G0020500 Rhododendron simsii HOM05D004144 ORTHO05D004902 5.4e-63 245.4 192 68.8
MCO11G668 Micromonas commoda HOM05D004144 ORTHO05D004902 2.3e-58 229.9 175 60.6
QL02p060046 Quercus lobata HOM05D004144 ORTHO05D004902 2.3e-58 229.9 225 59.1
AUR62037409 Chenopodium quinoa HOM05D004144 ORTHO05D004902 6.8e-58 228.4 157 75.2
Cre01.g055550 Chlamydomonas reinhardtii HOM05D004144 ORTHO05D004902 6.4e-56 221.9 241 50.2
Rhsim05G0054900 Rhododendron simsii HOM05D004144 ORTHO05D004902 8.3e-56 221.5 164 71.3
BcaC02g12462 Brassica carinata HOM05D004144 ORTHO05D004902 2.4e-55 219.9 146 84.2
Nitab4.5_0000905g0140 Nicotiana tabacum HOM05D004144 ORTHO05D004902 4.1e-55 219.2 134 81.3
CANSAT35G0424 Cannabis sativa HOM05D004144 ORTHO05D004902 2.1e-54 216.9 132 81.1
SHI20752 Sapria himalayana HOM05D004144 ORTHO05D004902 1.6e-51 207.2 137 75.9
PRCOL_00006103 Prasinoderma coloniale HOM05D004144 ORTHO05D004902 1.1e-47 194.5 191 52.9
BcaB03g15782 Brassica carinata HOM05D004144 ORTHO05D004902 2.1e-46 190.3 154 67.5
Haze_26263 Corylus avellana HOM05D004144 ORTHO05D004902 3.0e-45 186.4 201 45.8
BcaNung07044 Brassica carinata HOM05D004144 ORTHO05D004902 1.5e-44 184.1 100 92.0
BcaB03g13511 Brassica carinata HOM05D004144 ORTHO05D004902 7.3e-44 181.8 199 58.3
Hma1.2p1_0158F.1_g069830 Hydrangea macrophylla HOM05D004144 ORTHO05D004902 1.7e-40 170.6 190 55.8
Haze_26986 Corylus avellana HOM05D004144 ORTHO05D004902 4.2e-39 166.0 164 48.2
BcaB08g36056 Brassica carinata HOM05D004144 ORTHO05D004902 3.9e-37 159.5 119 74.8
Cfa022599 Carpinus fangiana HOM05D004144 ORTHO05D004902 3.1e-34 149.8 160 51.2
CsaV3_UNG141080 Cucumis sativus L. HOM05D004144 ORTHO05D004902 3.4e-33 146.4 151 55.6
CsaV3_UNG216460 Cucumis sativus L. HOM05D004144 ORTHO05D004902 3.4e-33 146.4 151 55.6
BolC9t57687H Brassica oleracea HOM05D004144 ORTHO05D004902 1.9e-31 140.6 111 75.7
DCAR_025183 Daucus carota HOM05D002069 ORTHO05D004902 7.1e-31 138.7 77 87.0
BcaNung06862 Brassica carinata HOM05D004144 ORTHO05D004902 1.6e-30 137.5 95 75.8
Pp3c16_1230 Physcomitrium patens HOM05D004144 ORTHO05D004902 1.3e-29 134.4 119 60.5
Gohir.A10G080150 Gossypium hirsutum HOM05D004144 ORTHO05D004902 8.7e-29 131.7 96 71.9
BcaC04g20051 Brassica carinata HOM05D004144 ORTHO05D004902 5.8e-25 119.0 114 64.9
BcaNung06861 Brassica carinata HOM05D004144 ORTHO05D004902 9.9e-25 118.2 66 89.4
C09p48370 Brassica napus HOM05D004144 ORTHO05D004902 3.8e-24 116.3 85 74.1
Dinv36681 Davidia involucrata HOM05D004144 ORTHO05D004902 2.4e-23 113.6 107 56.1
AUR62038774 Chenopodium quinoa HOM05D004144 ORTHO05D004902 1.2e-22 111.3 90 64.4
TAR002G0001 Trochodendron aralioides HOM05D004144 ORTHO05D004902 1.8e-21 107.5 165 44.2
Gohir.A08G125401 Gossypium hirsutum HOM05D004144 ORTHO05D004902 2.5e-20 103.6 106 56.6
BcaC05g24626 Brassica carinata HOM05D004144 ORTHO05D004902 4.8e-19 99.4 53 92.5
arahy.Tifrunner.gnm1.ann1.GZZ31L Arachis hypogaea HOM05D001327 ORTHO05D004902 9.0e-18 95.1 83 60.2
Oeu009435.1 Olea europaea HOM05D004144 ORTHO05D004902 1.0e-16 91.7 46 93.5
HanXRQChr03g0088171 Helianthus annuus HOM05D004144 ORTHO05D004902 8.4e-16 88.6 47 89.4
HanXRQChr13g0395861 Helianthus annuus HOM05D004144 ORTHO05D004902 8.4e-16 88.6 47 89.4
arahy.Tifrunner.gnm1.ann1.9TQH81 Arachis hypogaea HOM05D001327 ORTHO05D001271 5.5e-15 85.9 62 71.0
CDE06G2511 Ceratophyllum demersum HOM05D004144 ORTHO05D004902 3.3e-12 76.6 55 67.3
arahy.Tifrunner.gnm1.ann1.X1YH8V Arachis hypogaea HOM05D004144 ORTHO05D038922 6.3e-11 72.4 69 60.9
Oeu009434.1 Olea europaea HOM05D004144 ORTHO05D004902 1.1e-10 71.6 36 94.4


User provided reference genes

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