Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p53250 Brassica napus HOM05D004068 ORTHO05D004700 8.6e-213 743.4 387 100.0
A09p68650 Brassica napus HOM05D004068 ORTHO05D004700 1.7e-120 436.8 244 96.3
BraA09t42208Z Brassica rapa HOM05D004068 ORTHO05D004700 1.7e-120 436.8 244 96.3
BcaC07g42395 Brassica carinata HOM05D004068 ORTHO05D004700 5.4e-106 388.7 211 99.5
BolC8t52840H Brassica oleracea HOM05D004068 ORTHO05D004700 5.4e-106 388.7 211 99.5
BolC5t28909H Brassica oleracea HOM05D004068 ORTHO05D004700 9.9e-100 367.9 414 56.3
Thhalv10008621m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 2.8e-78 296.6 220 75.9
Sp1g01540 Schrenkiella parvula HOM05D004068 ORTHO05D004700 6.2e-78 295.4 219 75.8
BraA10t42404Z Brassica rapa HOM05D004068 ORTHO05D004700 4.9e-75 285.8 211 75.8
C05p01260 Brassica napus HOM05D004068 ORTHO05D004700 1.1e-74 284.6 211 75.4
A10p01260 Brassica napus HOM05D004068 ORTHO05D004700 1.4e-74 284.3 211 75.4
CARHR001790 Cardamine hirsuta HOM05D004068 ORTHO05D004700 2.8e-70 270.0 218 67.9
BcaB03g15774 Brassica carinata HOM05D004068 ORTHO05D004700 3.8e-67 259.6 465 40.4
AT1G02470 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 2.3e-64 250.4 213 66.7
AL1G11810 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 1.5e-63 247.7 217 64.5
Carub.0001s0154 Capsella rubella HOM05D004068 ORTHO05D004700 1.3e-59 234.6 230 59.1
Thhalv10008722m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 2.5e-55 220.3 328 39.3
BolC8t52839H Brassica oleracea HOM05D004068 ORTHO05D004700 3.3e-55 219.9 105 100.0
C05p01270 Brassica napus HOM05D004068 ORTHO05D004700 7.4e-55 218.8 325 39.7
A10p01270 Brassica napus HOM05D004068 ORTHO05D004700 8.2e-54 215.3 325 39.1
Sp1g01550 Schrenkiella parvula HOM05D004068 ORTHO05D004700 2.4e-53 213.8 330 38.5
Aa31LG1G10100 Aethionema arabicum HOM05D004068 ORTHO05D004700 3.1e-53 213.4 207 57.5
BraA10t42405Z Brassica rapa HOM05D004068 ORTHO05D004700 1.4e-50 204.5 326 38.0
THA.LOC104801317 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 3.3e-47 193.4 207 50.7
AT1G02475 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 9.7e-47 191.8 332 35.5
CARHR001800 Cardamine hirsuta HOM05D004068 ORTHO05D004700 9.7e-47 191.8 328 35.7
AL1G11820 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 1.3e-46 191.4 331 36.3
Carub.0001s0155 Capsella rubella HOM05D004068 ORTHO05D004700 1.7e-43 181.0 121 62.8
Gohir.D07G134600 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.7e-43 181.0 121 62.0
Gohir.A07G130200 Gossypium hirsutum HOM05D004068 ORTHO05D004700 3.8e-43 179.9 121 62.0
PGSC0003DMG400005200 Solanum tuberosum HOM05D004068 ORTHO05D004700 6.5e-43 179.1 121 60.3
Gorai.001G146300 Gossypium raimondii HOM05D004068 ORTHO05D004700 8.5e-43 178.7 121 61.2
Solyc01g068030.3 Solanum lycopersicum HOM05D004068 ORTHO05D004700 8.5e-43 178.7 121 60.3
Gorai.007G119900 Gossypium raimondii HOM05D004068 ORTHO05D004700 2.5e-42 177.2 121 59.5
Atru.chr5.916 Acer truncatum HOM05D004068 ORTHO05D004700 5.5e-42 176.0 125 59.2
Gohir.D11G111800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 7.2e-42 175.6 121 58.7
Sopen01g029950 Solanum pennellii HOM05D004068 ORTHO05D004700 7.2e-42 175.6 121 59.5
Eucgr.H00894 Eucalyptus grandis HOM05D004068 ORTHO05D004700 1.2e-41 174.9 121 58.7
Solyc01g068020.4 Solanum lycopersicum HOM05D004068 ORTHO05D004700 1.6e-41 174.5 121 57.9
Sopen01g029940 Solanum pennellii HOM05D004068 ORTHO05D004700 1.6e-41 174.5 121 57.9
Aa31LG1G10110 Aethionema arabicum HOM05D004068 ORTHO05D004700 2.7e-41 173.7 335 34.6
Nitab4.5_0004218g0050 Nicotiana tabacum HOM05D004068 ORTHO05D004700 2.7e-41 173.7 121 58.7
Duzib138G0863 Durio zibethinus HOM05D004068 ORTHO05D004700 3.6e-41 173.3 123 57.7
Peaxi162Scf00919g00026 Petunia axillaris HOM05D004068 ORTHO05D004700 6.1e-41 172.6 121 57.9
TWI14G0788 Tripterygium wilfordii HOM05D004068 ORTHO05D004700 6.1e-41 172.6 121 58.7
COL.COLO4_23168 Corchorus olitorius HOM05D004068 ORTHO05D004700 1.0e-40 171.8 121 57.9
MELO3C023625.2 Cucumis melo HOM05D004068 ORTHO05D004700 1.0e-40 171.8 121 59.5
CsaV3_7G030310 Cucumis sativus L. HOM05D004068 ORTHO05D004700 1.4e-40 171.4 121 59.5
PGR083G2849 Punica granatum HOM05D004068 ORTHO05D004700 1.4e-40 171.4 121 57.9
Thecc.01G321500 Theobroma cacao HOM05D004068 ORTHO05D004700 1.4e-40 171.4 121 57.9
Potri.002G190300 Populus trichocarpa HOM05D004068 ORTHO05D004700 2.3e-40 170.6 121 57.9
MSTRG.18070 Avicennia marina HOM05D004068 ORTHO05D004700 3.9e-40 169.9 121 57.0
Haze_05111 Corylus avellana HOM05D004068 ORTHO05D004700 5.2e-40 169.5 123 56.1
MD09G1287000 Malus domestica HOM05D004068 ORTHO05D004700 8.8e-40 168.7 121 56.2
Cfa004871 Carpinus fangiana HOM05D004068 ORTHO05D004700 1.1e-39 168.3 121 55.4
Prupe.3G006200 Prunus persica HOM05D004068 ORTHO05D004700 1.1e-39 168.3 202 44.6
CANSAT54G1466 Cannabis sativa HOM05D004068 ORTHO05D004700 2.0e-39 167.5 121 57.0
Manes.05G011200 Manihot esculenta HOM05D004068 ORTHO05D004700 2.0e-39 167.5 121 56.2
Nn3g21863 Nelumbo nucifera HOM05D004068 ORTHO05D004700 2.0e-39 167.5 121 56.2
Nitab4.5_0000222g0260 Nicotiana tabacum HOM05D004068 ORTHO05D004700 2.0e-39 167.5 121 57.9
Glyma.02G009000 Glycine max HOM05D004068 ORTHO05D004700 2.6e-39 167.2 121 56.2
Glyma.10G009700 Glycine max HOM05D004068 ORTHO05D004700 2.6e-39 167.2 121 56.2
Actinidia06383 Actinidia chinensis HOM05D004068 ORTHO05D004700 3.3e-39 166.8 121 55.4
Hma1.2p1_0484F.1_g162840 Hydrangea macrophylla HOM05D004068 ORTHO05D004700 3.3e-39 166.8 135 50.4
CSS0008406 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 4.4e-39 166.4 121 54.5
TAR636G1362 Trochodendron aralioides HOM05D004068 ORTHO05D004700 4.4e-39 166.4 118 57.6
Actinidia21362 Actinidia chinensis HOM05D004068 ORTHO05D004700 5.7e-39 166.0 121 56.2
Ciclev10022090m.g Citrus clementina HOM05D004068 ORTHO05D004700 7.4e-39 165.6 121 54.5
THA.LOC104801318 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 7.4e-39 165.6 128 57.8
HanXRQChr16g0512461 Helianthus annuus HOM05D004068 ORTHO05D004700 9.7e-39 165.2 121 55.4
Lalb_Chr06g0167051 Lupinus albus HOM05D004068 ORTHO05D004700 9.7e-39 165.2 121 55.4
CAN.G100.22 Capsicum annuum HOM05D004068 ORTHO05D004700 1.3e-38 164.9 229 39.7
Potri.014G115400 Populus trichocarpa HOM05D004068 ORTHO05D004700 1.7e-38 164.5 121 56.2
Rhsim13G0001400 Rhododendron simsii HOM05D004068 ORTHO05D004700 1.7e-38 164.5 121 54.5
Sed0019105 Sechium edule HOM05D004068 ORTHO05D004700 2.2e-38 164.1 121 57.0
Sed0027961 Sechium edule HOM05D004068 ORTHO05D004700 2.2e-38 164.1 121 57.9
EL10As5g23587 Beta vulgaris HOM05D004068 ORTHO05D004700 2.8e-38 163.7 118 57.6
ECA236G4612 Erigeron canadensis HOM05D004068 ORTHO05D004700 2.8e-38 163.7 148 48.0
QL12p034273 Quercus lobata HOM05D004068 ORTHO05D004700 3.7e-38 163.3 131 50.4
PSO170G5617 Papaver somniferum HOM05D004068 ORTHO05D004700 8.2e-38 162.2 121 52.9
PSO357G0073 Papaver somniferum HOM05D004068 ORTHO05D004700 8.2e-38 162.2 121 52.9
GSVIVG01028194001 Vitis vinifera HOM05D004068 ORTHO05D004700 8.2e-38 162.2 121 52.9
Medtr1g086340 Medicago truncatula HOM05D004068 ORTHO05D004700 1.1e-37 161.8 124 54.8
unitig_90.g27445 Utricularia gibba HOM05D004068 ORTHO05D004700 1.1e-37 161.8 131 50.4
PGR083G1259 Punica granatum HOM05D004068 ORTHO05D004700 1.8e-37 161.0 121 54.5
ATR0693G403 Amborella trichopoda HOM05D004068 ORTHO05D004700 2.4e-37 160.6 118 56.8
AT4G01883 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 2.4e-37 160.6 188 45.2
Cpa.g.sc67.88 Carica papaya HOM05D004068 ORTHO05D004700 2.4e-37 160.6 104 62.5
Migut.D00035 Erythranthe guttata HOM05D004068 ORTHO05D004700 4.1e-37 159.8 121 52.9
Carub.0006s3535 Capsella rubella HOM05D004068 ORTHO05D004700 5.3e-37 159.5 121 56.2
Cc01_g21940 Coffea canephora HOM05D004068 ORTHO05D004700 9.1e-37 158.7 121 53.7
Lsat_1_v5_gn_8_167400 Lactuca sativa HOM05D004068 ORTHO05D004700 9.1e-37 158.7 114 57.9
THA.LOC104801319 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 9.1e-37 158.7 121 55.4
FAN23G3049 Fragaria x ananassa HOM05D004068 ORTHO05D004700 1.2e-36 158.3 121 52.9
RcHm_v2.0_Chr3g0486891 Rosa chinensis HOM05D004068 ORTHO05D004700 1.2e-36 158.3 200 42.0
SalBow6G1478 Salvia bowleyana HOM05D004068 ORTHO05D004700 1.6e-36 157.9 121 53.7
Thhalv10028926m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 2.6e-36 157.1 121 56.2
Thhalv10028927m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 2.6e-36 157.1 121 56.2
FvH4_1g26710 Fragaria vesca HOM05D004068 ORTHO05D004700 2.6e-36 157.1 123 52.0
CAN.G100.23 Capsicum annuum HOM05D004068 ORTHO05D004700 3.5e-36 156.8 112 58.0
TAR633G0425 Trochodendron aralioides HOM05D004068 ORTHO05D004700 3.5e-36 156.8 121 52.9
CiPaw.07G122600 Carya illinoinensis HOM05D004068 ORTHO05D004700 7.7e-36 155.6 121 51.2
HPP92_010032 Vanilla planifolia HOM05D004068 ORTHO05D004700 1.0e-35 155.2 228 37.3
AL6G51410 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 1.3e-35 154.8 124 54.8
AUR62024574 Chenopodium quinoa HOM05D004068 ORTHO05D004700 1.3e-35 154.8 128 53.1
Sp6g01730 Schrenkiella parvula HOM05D004068 ORTHO05D004700 1.3e-35 154.8 121 54.5
Hund09678 Selenicereus undatus HOM05D004068 ORTHO05D004700 2.2e-35 154.1 114 56.1
HanXRQChr06g0168031 Helianthus annuus HOM05D004068 ORTHO05D004700 2.9e-35 153.7 145 46.2
Aqoxy2G02578 Aquilegia oxysepala HOM05D004068 ORTHO05D004700 5.0e-35 152.9 124 53.2
Duzib211G0484 Durio zibethinus HOM05D004068 ORTHO05D004700 5.0e-35 152.9 105 57.1
Sc17g0000200 Simmondsia chinensis HOM05D004068 ORTHO05D004700 1.5e-34 151.4 107 56.1
SGA_v2.0_scaffold417G51268 Striga asiatica HOM05D004068 ORTHO05D004700 1.5e-34 151.4 132 50.0
BcaC04g24068 Brassica carinata HOM05D004068 ORTHO05D004700 1.9e-34 151.0 144 47.2
BcaB01g02105 Brassica carinata HOM05D004068 ORTHO05D004700 3.2e-34 150.2 208 40.4
Zm00001eb131060 Zea mays HOM05D004068 ORTHO05D004700 4.2e-34 149.8 119 51.3
FAN28G2449 Fragaria x ananassa HOM05D004068 ORTHO05D004700 5.5e-34 149.4 143 45.5
BcaC07g42396 Brassica carinata HOM05D004068 ORTHO05D004700 9.4e-34 148.7 114 56.1
CiPaw.08G084800 Carya illinoinensis HOM05D004068 ORTHO05D004700 9.4e-34 148.7 106 53.8
C09p01400 Brassica napus HOM05D004068 ORTHO05D004700 8.0e-33 145.6 123 52.0
MBI19_g32706_MAGBIO Magnolia biondii HOM05D004068 ORTHO05D004700 1.8e-32 144.4 123 49.6
BolC9t53073H Brassica oleracea HOM05D004068 ORTHO05D004700 4.0e-32 143.3 129 49.6
AUR62011741 Chenopodium quinoa HOM05D004068 ORTHO05D004700 4.0e-32 143.3 103 57.3
SEGI_19128 Sequoiadendron giganteum HOM05D004068 ORTHO05D004700 6.8e-32 142.5 119 47.9
FAN26G1054 Fragaria x ananassa HOM05D004068 ORTHO05D004700 6.3e-30 136.0 174 36.8
AagrBONN_evm.TU.Sc2ySwM_228.3301 Anthoceros agrestis HOM05D004068 ORTHO05D004700 3.1e-29 133.7 116 45.7
Pp3c26_7940 Physcomitrium patens HOM05D004068 ORTHO05D004700 4.1e-29 133.3 119 43.7
Mapoly0066s0015 Marchantia polymorpha HOM05D004068 ORTHO05D004700 9.1e-29 132.1 142 40.8
FAN19G0978 Fragaria x ananassa HOM05D004068 ORTHO05D004700 1.7e-27 127.9 175 36.6
Gohir.A11G106800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.7e-27 127.9 89 56.2
CDE02G2955 Ceratophyllum demersum HOM05D000037 ORTHO05D001684 1.5e-26 124.8 146 41.1
MD17G1279300 Malus domestica HOM05D004068 ORTHO05D004700 2.5e-26 124.0 96 51.0
SMO134G0067 Selaginella moellendorffii HOM05D004068 ORTHO05D004700 2.5e-26 124.0 110 46.4
DCAR_018255 Daucus carota HOM05D004068 ORTHO05D004700 9.4e-26 122.1 90 53.3
Sabra14G0085500 Salix brachista HOM05D004068 ORTHO05D004700 9.4e-26 122.1 153 39.2
CBR_g29411 Chara braunii HOM05D004068 ORTHO05D004700 2.1e-25 120.9 121 39.7
Lj1A11T70 Lonicera japonica HOM05D004068 ORTHO05D004700 2.7e-25 120.6 141 41.1
CSS0031477 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 4.7e-25 119.8 88 55.7
CSS0047755 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 8.0e-25 119.0 88 54.5
CARHR249850 Cardamine hirsuta HOM05D004068 ORTHO05D004700 1.8e-24 117.9 89 53.9
Pp3c9_13510 Physcomitrium patens HOM05D004068 ORTHO05D004700 6.8e-24 115.9 118 35.6
HPP92_015252 Vanilla planifolia HOM05D004068 ORTHO05D004700 1.2e-23 115.2 83 54.2
Sabra02G0165200 Salix brachista HOM05D004068 ORTHO05D004700 3.4e-23 113.6 140 40.0
MCO03G258 Micromonas commoda HOM05D004068 ORTHO05D004700 1.4e-21 108.2 117 39.3
ClCG09G004770 Citrullus lanatus HOM05D004068 ORTHO05D004700 2.0e-20 104.4 113 46.0
Cre14.g616250 Chlamydomonas reinhardtii HOM05D004068 ORTHO05D004700 3.8e-19 100.1 126 35.7
VMungo0720G2238 Vigna mungo HOM05D004068 ORTHO05D004700 9.5e-18 95.5 121 38.0
Phvul.007G211200 Phaseolus vulgaris HOM05D004068 ORTHO05D004700 2.1e-17 94.4 82 48.8
Lj5g0018153 Lotus japonicus HOM05D004068 ORTHO05D004700 3.6e-17 93.6 81 48.1
Dinv12104 Davidia involucrata HOM05D004068 ORTHO05D004700 8.0e-17 92.4 64 53.1
Aa31LG5G1470 Aethionema arabicum HOM05D004068 ORTHO05D004700 1.0e-16 92.0 106 42.5
Psat6g159440 Pisum sativum HOM05D004068 ORTHO05D004700 5.2e-16 89.7 72 50.0
PRCOL_00002997 Prasinoderma coloniale HOM05D004068 ORTHO05D004700 1.2e-15 88.6 116 34.5
BraA09t35801Z Brassica rapa HOM05D004068 ORTHO05D004700 2.6e-15 87.4 92 45.7
Ah.02g112620 Amaranthus hybridus HOM05D004068 ORTHO05D004700 3.7e-14 83.6 63 54.0
Ca_10252_v3 Cicer arietinum L. HOM05D004068 ORTHO05D004700 8.3e-14 82.4 68 48.5
arahy.Tifrunner.gnm1.ann1.20WW32 Arachis hypogaea HOM05D004068 ORTHO05D004700 1.8e-13 81.3 68 48.5
arahy.Tifrunner.gnm1.ann1.G5UTBZ Arachis hypogaea HOM05D004068 ORTHO05D004700 1.8e-13 81.3 68 48.5
CAN.G257.121 Capsicum annuum HOM05D004068 ORTHO05D004700 5.4e-13 79.7 59 59.3
vmacro09333 Vaccinium macrocarpon HOM05D004068 ORTHO05D004700 1.2e-12 78.6 65 47.7
TPR.G3089 Trifolium pratense HOM05D004068 ORTHO05D004700 4.5e-12 76.6 166 30.7
Oeu052569.2 Olea europaea HOM05D004068 ORTHO05D004700 1.7e-06 58.2 119 34.5
A09p01340 Brassica napus HOM05D004068 ORTHO05D004700 2.2e-06 57.8 80 41.2
Glyma.19G225300 Glycine max HOM05D004068 ORTHO05D004700 8.3e-06 55.8 85 32.9


User provided reference genes

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