Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g42250 Brassica carinata HOM05D007014 ORTHO05D008894 3.7e-88 328.2 163 100.0
C08p52830 Brassica napus HOM05D007014 ORTHO05D008894 3.7e-88 328.2 163 100.0
BcaC07g42259 Brassica carinata HOM05D007014 ORTHO05D008894 2.6e-86 322.0 163 99.4
BolC8t52799H Brassica oleracea HOM05D007014 ORTHO05D008894 1.0e-82 310.1 163 95.7
BcaC07g42241 Brassica carinata HOM05D007014 ORTHO05D008894 1.5e-81 306.2 163 94.5
BraA09t42163Z Brassica rapa HOM05D007014 ORTHO05D008894 5.6e-81 304.3 163 93.3
BcaC07g42236 Brassica carinata HOM05D007014 ORTHO05D008894 4.9e-77 291.2 163 89.6
Carub.0001s0276 Capsella rubella HOM05D007014 ORTHO05D008894 1.6e-75 286.2 163 87.1
Sp1g02550 Schrenkiella parvula HOM05D007014 ORTHO05D008894 7.9e-75 283.9 163 86.5
AT1G03650 Arabidopsis thaliana HOM05D007014 ORTHO05D008894 2.5e-73 278.9 163 84.0
Thhalv10008981m.g Eutrema salsugineum HOM05D007014 ORTHO05D008894 3.7e-72 275.0 163 85.3
CARHR002980 Cardamine hirsuta HOM05D007014 ORTHO05D008894 1.1e-71 273.5 159 84.3
AL1G13150 Arabidopsis lyrata HOM05D007014 ORTHO05D008894 3.1e-71 271.9 163 83.4
Aa31LG1G20970 Aethionema arabicum HOM05D007014 ORTHO05D008894 1.2e-67 260.0 161 78.9
THA.LOC104801176 Tarenaya hassleriana HOM05D007014 ORTHO05D008894 3.8e-61 238.4 162 73.5
Hma1.2p1_1201F.1_g266700 Hydrangea macrophylla HOM05D007014 ORTHO05D008894 2.7e-59 232.3 155 71.6
GSVIVG01030373001 Vitis vinifera HOM05D007014 ORTHO05D008894 2.0e-57 226.1 160 70.0
Haze_13147 Corylus avellana HOM05D007014 ORTHO05D008894 3.3e-57 225.3 159 66.7
Cfa014594 Carpinus fangiana HOM05D007014 ORTHO05D008894 4.4e-57 224.9 159 67.3
Prupe.3G155400 Prunus persica HOM05D007014 ORTHO05D008894 5.7e-57 224.6 161 67.7
QL08p038417 Quercus lobata HOM05D007014 ORTHO05D008894 7.4e-57 224.2 156 67.9
ClCG02G017580 Citrullus lanatus HOM05D007014 ORTHO05D008894 4.8e-56 221.5 158 66.5
Sed0017748 Sechium edule HOM05D007014 ORTHO05D008894 8.2e-56 220.7 158 67.7
MELO3C024591.2 Cucumis melo HOM05D007014 ORTHO05D008894 1.1e-55 220.3 158 65.8
Duzib052G1001 Durio zibethinus HOM05D007014 ORTHO05D008894 1.4e-55 219.9 163 69.9
Thecc.02G177900 Theobroma cacao HOM05D007014 ORTHO05D008894 1.4e-55 219.9 162 70.4
Dinv02170 Davidia involucrata HOM05D007014 ORTHO05D008894 1.8e-55 219.5 159 66.7
RcHm_v2.0_Chr6g0277731 Rosa chinensis HOM05D007014 ORTHO05D008894 5.3e-55 218.0 161 65.8
Nn1g06593 Nelumbo nucifera HOM05D007014 ORTHO05D008894 9.1e-55 217.2 152 68.4
COL.COLO4_07554 Corchorus olitorius HOM05D007014 ORTHO05D008894 1.5e-54 216.5 162 69.1
Nitab4.5_0003022g0100 Nicotiana tabacum HOM05D007014 ORTHO05D008894 2.6e-54 215.7 159 66.0
Potri.013G134102 Populus trichocarpa HOM05D007014 ORTHO05D008894 2.6e-54 215.7 157 67.5
SalBow1G7232 Salvia bowleyana HOM05D007014 ORTHO05D008894 2.6e-54 215.7 154 66.2
Potri.013G134000 Populus trichocarpa HOM05D007014 ORTHO05D008894 3.5e-54 215.3 157 67.5
Lj8A113T47 Lonicera japonica HOM05D007014 ORTHO05D008894 4.5e-54 214.9 154 70.1
Peaxi162Scf02133g00022 Petunia axillaris HOM05D007014 ORTHO05D008894 4.5e-54 214.9 159 65.4
MD09G1249800 Malus domestica HOM05D007014 ORTHO05D008894 5.9e-54 214.5 162 66.0
CAN.G486.11 Capsicum annuum HOM05D007014 ORTHO05D008894 7.7e-54 214.2 155 65.8
Cpa.g.sc34.144 Carica papaya HOM05D007014 ORTHO05D008894 7.7e-54 214.2 156 67.9
FvH4_2g15130 Fragaria vesca HOM05D007014 ORTHO05D008894 1.7e-53 213.0 162 66.0
Sabra13G0113800 Salix brachista HOM05D007014 ORTHO05D008894 1.7e-53 213.0 153 67.3
Ca_28202_v3 Cicer arietinum L. HOM05D007014 ORTHO05D008894 2.2e-53 212.6 154 68.2
PGSC0003DMG400007868 Solanum tuberosum HOM05D007014 ORTHO05D008894 2.2e-53 212.6 154 66.9
Gohir.D13G066000 Gossypium hirsutum HOM05D007014 ORTHO05D008894 2.9e-53 212.2 160 68.8
Gorai.013G075300 Gossypium raimondii HOM05D007014 ORTHO05D008894 2.9e-53 212.2 160 68.8
CsaV3_6G013010 Cucumis sativus L. HOM05D007014 ORTHO05D008894 3.8e-53 211.8 165 62.4
PGSC0003DMG400007866 Solanum tuberosum HOM05D007014 ORTHO05D008894 3.8e-53 211.8 154 66.9
CSS0024097 Camellia sinensis var. sinensis HOM05D007014 ORTHO05D008894 5.0e-53 211.5 160 66.9
TPR.G21768 Trifolium pratense HOM05D007014 ORTHO05D008894 5.0e-53 211.5 161 66.5
FAN27G2134 Fragaria x ananassa HOM05D007014 ORTHO05D008894 6.5e-53 211.1 162 65.4
Psat7g157760 Pisum sativum HOM05D007014 ORTHO05D008894 6.5e-53 211.1 147 70.1
TWI36G0686 Tripterygium wilfordii HOM05D007014 ORTHO05D008894 6.5e-53 211.1 154 66.2
CANSAT78G1474 Cannabis sativa HOM05D007014 ORTHO05D008894 8.5e-53 210.7 158 65.2
Medtr4g046047 Medicago truncatula HOM05D007014 ORTHO05D008894 8.5e-53 210.7 156 67.3
Ciclev10022631m.g Citrus clementina HOM05D007014 ORTHO05D008894 1.1e-52 210.3 156 66.0
Lj3g0024821 Lotus japonicus HOM05D007014 ORTHO05D008894 1.5e-52 209.9 161 67.1
EL10Ac9g20747 Beta vulgaris HOM05D007014 ORTHO05D008894 1.9e-52 209.5 159 62.3
Glyma.12G111800 Glycine max HOM05D007014 ORTHO05D008894 2.5e-52 209.1 161 65.8
Ciclev10022606m.g Citrus clementina HOM05D007014 ORTHO05D008894 3.2e-52 208.8 156 64.7
Oeu029922.1 Olea europaea HOM05D007014 ORTHO05D008894 3.2e-52 208.8 154 66.2
Manes.12G090900 Manihot esculenta HOM05D007014 ORTHO05D008894 4.2e-52 208.4 155 64.5
Gohir.A13G056000 Gossypium hirsutum HOM05D007014 ORTHO05D008894 5.5e-52 208.0 163 66.3
Nitab4.5_0002575g0020 Nicotiana tabacum HOM05D007014 ORTHO05D008894 7.2e-52 207.6 172 60.5
vmacro09278 Vaccinium macrocarpon HOM05D007014 ORTHO05D008894 1.2e-51 206.8 155 63.9
TAR629G1268 Trochodendron aralioides HOM05D007014 ORTHO05D008894 1.6e-51 206.5 160 63.8
Cc05_g06870 Coffea canephora HOM05D007014 ORTHO05D008894 2.7e-51 205.7 154 67.5
HanXRQChr17g0553541 Helianthus annuus HOM05D007014 ORTHO05D008894 2.7e-51 205.7 155 63.9
Rhsim04G0068000 Rhododendron simsii HOM05D007014 ORTHO05D008894 6.1e-51 204.5 155 63.2
Solyc12g010680.3 Solanum lycopersicum HOM05D007014 ORTHO05D008894 8.0e-51 204.1 154 65.6
Phvul.011G117200 Phaseolus vulgaris HOM05D007014 ORTHO05D008894 1.4e-50 203.4 161 64.6
Sopen12g005310 Solanum pennellii HOM05D007014 ORTHO05D008894 1.4e-50 203.4 154 64.9
arahy.Tifrunner.gnm1.ann1.YPG8JQ Arachis hypogaea HOM05D007014 ORTHO05D008894 3.0e-50 202.2 157 61.8
SGA_v2.0_scaffold307G48064 Striga asiatica HOM05D007014 ORTHO05D008894 3.0e-50 202.2 152 63.8
Aqoxy4G01010 Aquilegia oxysepala HOM05D007014 ORTHO05D008894 3.9e-50 201.8 156 60.3
FAN15G2141 Fragaria x ananassa HOM05D007014 ORTHO05D008894 5.2e-50 201.4 155 65.8
arahy.Tifrunner.gnm1.ann1.1ZYA2W Arachis hypogaea HOM05D007014 ORTHO05D008894 6.7e-50 201.1 157 61.8
arahy.Tifrunner.gnm1.ann1.UXPW02 Arachis hypogaea HOM05D007014 ORTHO05D008894 8.8e-50 200.7 157 61.1
MSTRG.12316 Avicennia marina HOM05D007014 ORTHO05D008894 8.8e-50 200.7 154 61.7
Sc21g0002660 Simmondsia chinensis HOM05D007014 ORTHO05D008894 1.1e-49 200.3 159 61.6
C08p52730 Brassica napus HOM05D007014 ORTHO05D008894 2.0e-49 199.5 112 90.2
Migut.H01076 Erythranthe guttata HOM05D007014 ORTHO05D008894 7.4e-49 197.6 157 61.8
A09p68280 Brassica napus HOM05D001041 ORTHO05D000846 2.8e-48 195.7 111 88.3
MBI17_g43194_MAGBIO Magnolia biondii HOM05D007014 ORTHO05D008894 3.7e-48 195.3 142 66.9
unitig_21.g20401 Utricularia gibba HOM05D007014 ORTHO05D008894 3.7e-48 195.3 157 61.8
PSO210G2618 Papaver somniferum HOM05D007014 ORTHO05D008894 4.8e-48 194.9 160 60.0
Glyma.06G293600 Glycine max HOM05D007014 ORTHO05D008894 1.1e-47 193.7 161 61.5
PSO832G4125 Papaver somniferum HOM05D007014 ORTHO05D008894 5.3e-47 191.4 160 59.4
ATR0680G283 Amborella trichopoda HOM05D007014 ORTHO05D008894 1.6e-46 189.9 158 59.5
CiPaw.03G175500 Carya illinoinensis HOM05D007014 ORTHO05D008894 7.7e-46 187.6 140 62.1
VMungo1127G0420 Vigna mungo HOM05D007014 ORTHO05D008894 7.7e-46 187.6 181 54.7
FAN24G2354 Fragaria x ananassa HOM05D007014 ORTHO05D008894 1.3e-45 186.8 161 60.9
CDE02G4296 Ceratophyllum demersum HOM05D007014 ORTHO05D008894 8.5e-45 184.1 154 57.8
arahy.Tifrunner.gnm1.ann1.THUB96 Arachis hypogaea HOM05D007014 ORTHO05D008894 2.5e-44 182.6 138 63.8
HPP92_002954 Vanilla planifolia HOM05D007014 ORTHO05D008894 5.5e-44 181.4 150 61.3
Lsat_1_v5_gn_8_133041 Lactuca sativa HOM05D007014 ORTHO05D008894 1.8e-42 176.4 156 57.1
Zm00001eb044470 Zea mays HOM05D007014 ORTHO05D008894 2.3e-42 176.0 155 57.4
ECA233G3399 Erigeron canadensis HOM05D007880 ORTHO05D003386 1.2e-41 173.7 138 60.9
TWI36G1550 Tripterygium wilfordii HOM05D007014 ORTHO05D008894 5.7e-41 171.4 155 54.8
Zm00001eb044400 Zea mays HOM05D007014 ORTHO05D008894 3.7e-40 168.7 155 56.8
Mapoly0101s0002 Marchantia polymorpha HOM05D007014 ORTHO05D008894 7.2e-36 154.5 153 56.9
Os10g0500400 Oryza sativa ssp. japonica HOM05D007014 ORTHO05D008894 7.2e-36 154.5 168 51.2
Lalb_Chr01g0005301 Lupinus albus HOM05D007014 ORTHO05D008894 4.4e-33 145.2 96 71.9
Actinidia30478 Actinidia chinensis HOM05D007014 ORTHO05D008894 1.6e-30 136.7 103 65.0
AagrBONN_evm.TU.Sc2ySwM_344.4393 Anthoceros agrestis HOM05D007014 ORTHO05D008894 7.7e-30 134.4 151 49.7
Lsat_1_v5_gn_8_132641 Lactuca sativa HOM05D007014 ORTHO05D008894 2.9e-29 132.5 94 68.1
Ciclev10023600m.g Citrus clementina HOM05D007014 ORTHO05D008894 6.3e-24 114.8 78 67.9
QL12p004320 Quercus lobata HOM05D007014 ORTHO05D008894 1.1e-23 114.0 74 68.9
Sabra11G0072100 Salix brachista HOM05D000036 ORTHO05D000095 1.2e-22 110.5 81 64.2
Sabra15G0066900 Salix brachista HOM05D000036 ORTHO05D000095 1.2e-22 110.5 81 64.2
Hund01169 Selenicereus undatus HOM05D007014 ORTHO05D008894 5.6e-20 101.7 80 58.8
DCAR_013001 Daucus carota HOM05D007014 ORTHO05D008894 1.6e-19 100.1 82 61.0
Sabra13G0113700 Salix brachista HOM05D000264 ORTHO05D000152 3.6e-19 99.0 81 59.3
AUR62037369 Chenopodium quinoa HOM05D007014 ORTHO05D008894 3.2e-15 85.9 63 63.5
PRCOL_00005877 Prasinoderma coloniale HOM05D007014 ORTHO05D008894 2.0e-14 83.2 104 46.2
MELO3C013609.2 Cucumis melo HOM05D007014 ORTHO05D008894 1.3e-13 80.5 70 54.3
SalBow1G7442 Salvia bowleyana HOM05D007014 ORTHO05D008894 2.8e-11 72.8 49 61.2
Pp3c2_27490 Physcomitrium patens HOM05D007014 ORTHO05D008894 1.4e-10 70.5 81 49.4


User provided reference genes

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