Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g42237 Brassica carinata HOM05D003772 ORTHO05D004509 2.8e-83 312.0 170 100.0
C08p52680 Brassica napus HOM05D003772 ORTHO05D004509 2.8e-83 312.0 170 100.0
BolC8t52794H Brassica oleracea HOM05D003772 ORTHO05D004509 2.8e-83 312.0 170 100.0
A09p68240 Brassica napus HOM05D003772 ORTHO05D004509 6.3e-83 310.8 170 99.4
BraA09t42159Z Brassica rapa HOM05D003772 ORTHO05D004509 6.3e-83 310.8 170 99.4
BcaC07g42231 Brassica carinata HOM05D003772 ORTHO05D004509 7.7e-81 303.9 171 97.7
BcaC07g42232 Brassica carinata HOM05D003772 ORTHO05D004509 7.7e-81 303.9 171 97.7
Sp1g02590 Schrenkiella parvula HOM05D003772 ORTHO05D004509 4.8e-75 284.6 167 94.6
Thhalv10008772m.g Eutrema salsugineum HOM05D003772 ORTHO05D004509 6.3e-75 284.3 168 94.6
CARHR003060 Cardamine hirsuta HOM05D003772 ORTHO05D004509 1.2e-73 280.0 171 91.2
AL1G13270 Arabidopsis lyrata HOM05D003772 ORTHO05D004509 1.0e-72 276.9 167 92.8
Carub.0001s0283 Capsella rubella HOM05D003772 ORTHO05D004509 5.0e-72 274.6 168 91.7
AT1G03730 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 1.5e-71 273.1 167 91.6
Aa31LG1G8940 Aethionema arabicum HOM05D003772 ORTHO05D004509 1.5e-68 263.1 169 85.2
AT4G03600 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 5.2e-61 238.0 154 85.1
Aa31LG5G2950 Aethionema arabicum HOM05D003772 ORTHO05D004509 8.8e-61 237.3 168 78.0
AL6G49180 Arabidopsis lyrata HOM05D003772 ORTHO05D004509 1.1e-58 230.3 158 80.4
THA.LOC104801171 Tarenaya hassleriana HOM05D003772 ORTHO05D004509 1.8e-58 229.6 172 75.6
Thhalv10029253m.g Eutrema salsugineum HOM05D003772 ORTHO05D004509 3.1e-58 228.8 157 81.5
Sp6g03590 Schrenkiella parvula HOM05D003772 ORTHO05D004509 7.0e-58 227.6 157 79.6
Ciclev10016940m.g Citrus clementina HOM05D003772 ORTHO05D004509 3.7e-51 205.3 147 74.8
Atru.chr6.2987 Acer truncatum HOM05D003772 ORTHO05D004509 6.4e-51 204.5 151 72.8
PGR042G2646 Punica granatum HOM05D003772 ORTHO05D004509 1.8e-50 203.0 163 66.9
Lj3g0023444 Lotus japonicus HOM05D003772 ORTHO05D004509 4.1e-50 201.8 155 69.7
Duzib132G0444 Durio zibethinus HOM05D003772 ORTHO05D004509 5.4e-50 201.4 158 67.7
RcHm_v2.0_Chr2g0126711 Rosa chinensis HOM05D003772 ORTHO05D004509 1.6e-49 199.9 151 70.9
Thecc.02G180700 Theobroma cacao HOM05D003772 ORTHO05D004509 1.6e-49 199.9 158 69.6
Manes.12G089142 Manihot esculenta HOM05D003772 ORTHO05D004509 3.5e-49 198.7 152 70.4
TWI59G0493 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 5.9e-49 198.0 166 66.9
Manes.13G145756 Manihot esculenta HOM05D003772 ORTHO05D004509 7.8e-49 197.6 158 66.5
Manes.13G145808 Manihot esculenta HOM05D003772 ORTHO05D004509 1.0e-48 197.2 158 66.5
Manes.13G145815 Manihot esculenta HOM05D003772 ORTHO05D004509 1.3e-48 196.8 158 66.5
Manes.13G146061 Manihot esculenta HOM05D003772 ORTHO05D004509 1.3e-48 196.8 158 66.5
TWI14G0986 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 1.7e-48 196.4 151 69.5
FAN09G0390 Fragaria x ananassa HOM05D003772 ORTHO05D004509 3.0e-48 195.7 146 72.6
FvH4_6g26280 Fragaria vesca HOM05D003772 ORTHO05D004509 5.0e-48 194.9 145 73.1
FAN02G3561 Fragaria x ananassa HOM05D003772 ORTHO05D004509 5.0e-48 194.9 145 73.1
FAN05G4300 Fragaria x ananassa HOM05D003772 ORTHO05D004509 5.0e-48 194.9 145 73.1
Duzib052G1162 Durio zibethinus HOM05D003772 ORTHO05D004509 6.6e-48 194.5 162 66.7
Manes.13G145890 Manihot esculenta HOM05D003772 ORTHO05D004509 8.6e-48 194.1 158 65.8
CsaV3_7G004480 Cucumis sativus L. HOM05D003772 ORTHO05D004509 1.9e-47 193.0 152 68.4
Duzib248G0440 Durio zibethinus HOM05D003772 ORTHO05D004509 1.9e-47 193.0 150 70.0
ClCG00G003560 Citrullus lanatus HOM05D003772 ORTHO05D004509 3.3e-47 192.2 152 68.4
ClCG07G002860 Citrullus lanatus HOM05D003772 ORTHO05D004509 3.3e-47 192.2 152 68.4
MELO3C018731.2 Cucumis melo HOM05D003772 ORTHO05D004509 3.3e-47 192.2 152 68.4
Potri.013G130300 Populus trichocarpa HOM05D003772 ORTHO05D004509 3.3e-47 192.2 163 65.6
Manes.13G145811 Manihot esculenta HOM05D003772 ORTHO05D004509 7.3e-47 191.0 158 64.6
Medtr4g078240 Medicago truncatula HOM05D003772 ORTHO05D004509 7.3e-47 191.0 163 63.8
Sed0018072 Sechium edule HOM05D003772 ORTHO05D004509 7.3e-47 191.0 159 64.8
COL.COLO4_30203 Corchorus olitorius HOM05D003772 ORTHO05D004509 9.5e-47 190.7 147 71.4
Gorai.005G201000 Gossypium raimondii HOM05D003772 ORTHO05D004509 2.1e-46 189.5 148 72.3
MD09G1246800 Malus domestica HOM05D003772 ORTHO05D004509 2.1e-46 189.5 169 62.7
Haze_13171 Corylus avellana HOM05D003772 ORTHO05D004509 3.6e-46 188.7 138 73.9
Glyma.12G113500 Glycine max HOM05D003772 ORTHO05D004509 3.6e-46 188.7 165 61.8
Glyma.13G296500 Glycine max HOM05D003772 ORTHO05D004509 3.6e-46 188.7 147 69.4
Lalb_Chr03g0029491 Lupinus albus HOM05D003772 ORTHO05D004509 6.2e-46 188.0 150 66.0
Gohir.A03G156100 Gossypium hirsutum HOM05D003772 ORTHO05D004509 8.0e-46 187.6 146 72.6
Gohir.D02G179200 Gossypium hirsutum HOM05D003772 ORTHO05D004509 1.8e-45 186.4 146 71.9
TWI23G0933 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 1.8e-45 186.4 155 65.8
Hma1.2p1_0002F.1_g001920 Hydrangea macrophylla HOM05D003772 ORTHO05D004509 2.3e-45 186.0 142 68.3
TPR.G28019 Trifolium pratense HOM05D003772 ORTHO05D004509 2.3e-45 186.0 149 67.1
Phvul.011G119000 Phaseolus vulgaris HOM05D003772 ORTHO05D004509 3.1e-45 185.7 156 66.0
Glyma.06G292300 Glycine max HOM05D003772 ORTHO05D004509 4.0e-45 185.3 150 65.3
Glyma.12G204900 Glycine max HOM05D003772 ORTHO05D004509 8.9e-45 184.1 147 68.0
MD17G1239700 Malus domestica HOM05D003772 ORTHO05D004509 1.2e-44 183.7 146 67.8
VMungo1127G0003 Vigna mungo HOM05D003772 ORTHO05D004509 1.2e-44 183.7 156 66.7
VMungo1080G0856 Vigna mungo HOM05D003772 ORTHO05D004509 3.4e-44 182.2 152 67.1
Gohir.A01G016500 Gossypium hirsutum HOM05D003772 ORTHO05D004509 4.4e-44 181.8 163 63.8
CSS0030564 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 5.8e-44 181.4 146 65.8
Lalb_Chr19g0135261 Lupinus albus HOM05D003772 ORTHO05D004509 5.8e-44 181.4 152 64.5
Prupe.3G132300 Prunus persica HOM05D003772 ORTHO05D004509 8.3e-43 177.6 144 67.4
THA.LOC104804060 Tarenaya hassleriana HOM05D003772 ORTHO05D004509 1.4e-42 176.8 149 64.4
Lsat_1_v5_gn_4_66640 Lactuca sativa HOM05D003772 ORTHO05D004509 2.4e-42 176.0 145 64.1
Peaxi162Scf00132g00006 Petunia axillaris HOM05D003772 ORTHO05D004509 3.2e-42 175.6 162 58.0
MSTRG.14329 Avicennia marina HOM05D003772 ORTHO05D004509 4.1e-42 175.3 146 65.1
MSTRG.14330 Avicennia marina HOM05D003772 ORTHO05D004509 4.1e-42 175.3 146 65.1
Gohir.D01G016600 Gossypium hirsutum HOM05D003772 ORTHO05D004509 1.6e-41 173.3 144 66.7
Psat0s2365g0040 Pisum sativum HOM05D003772 ORTHO05D004509 1.6e-41 173.3 142 67.6
BcaNung01575 Brassica carinata HOM05D003772 ORTHO05D004509 2.0e-41 172.9 142 65.5
Dinv26410 Davidia involucrata HOM05D000001 ORTHO05D004509 2.0e-41 172.9 157 59.9
Gorai.002G018300 Gossypium raimondii HOM05D003772 ORTHO05D004509 2.7e-41 172.6 144 66.7
Thhalv10026455m.g Eutrema salsugineum HOM05D003772 ORTHO05D004509 3.5e-41 172.2 142 65.5
HanXRQChr05g0130551 Helianthus annuus HOM05D003772 ORTHO05D004509 4.6e-41 171.8 145 62.8
AL7G24270 Arabidopsis lyrata HOM05D003772 ORTHO05D004509 6.0e-41 171.4 142 62.7
AT4G28330 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 6.0e-41 171.4 142 62.7
Peaxi162Scf00059g00193 Petunia axillaris HOM05D003772 ORTHO05D004509 6.0e-41 171.4 157 58.6
Actinidia11078 Actinidia chinensis HOM05D003772 ORTHO05D004509 7.8e-41 171.0 162 61.1
BcaC09g50489 Brassica carinata HOM05D003772 ORTHO05D004509 1.3e-40 170.2 142 64.1
C01p24810 Brassica napus HOM05D003772 ORTHO05D004509 1.3e-40 170.2 142 64.1
EL10Ac9g20774 Beta vulgaris HOM05D003772 ORTHO05D004509 1.7e-40 169.9 151 63.6
Carub.0007s1242 Capsella rubella HOM05D003772 ORTHO05D004509 1.7e-40 169.9 142 62.7
A01p19750 Brassica napus HOM05D003772 ORTHO05D004509 2.3e-40 169.5 142 64.1
BraA01t01906Z Brassica rapa HOM05D003772 ORTHO05D004509 2.3e-40 169.5 142 64.1
Cc05_g07210 Coffea canephora HOM05D003772 ORTHO05D004509 2.3e-40 169.5 167 56.9
Lj8P111T15 Lonicera japonica HOM05D003772 ORTHO05D004509 2.3e-40 169.5 141 65.2
Migut.F01269 Erythranthe guttata HOM05D003772 ORTHO05D004509 3.0e-40 169.1 143 62.9
SHI10396 Sapria himalayana HOM05D003772 ORTHO05D004509 3.0e-40 169.1 145 60.7
Sp7g26290 Schrenkiella parvula HOM05D003772 ORTHO05D004509 3.9e-40 168.7 142 64.8
A08p20120 Brassica napus HOM05D003772 ORTHO05D004509 8.6e-40 167.5 142 64.1
BraA08t33971Z Brassica rapa HOM05D003772 ORTHO05D004509 8.6e-40 167.5 142 64.1
SGA_v2.0_scaffold322G48628 Striga asiatica HOM05D003772 ORTHO05D004509 8.6e-40 167.5 164 56.7
AT4G28340 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 2.5e-39 166.0 150 58.7
DCAR_021247 Daucus carota HOM05D003772 ORTHO05D004509 2.5e-39 166.0 158 59.5
CAN.G248.1 Capsicum annuum HOM05D003772 ORTHO05D004509 5.6e-39 164.9 149 61.1
CARHR236040 Cardamine hirsuta HOM05D003772 ORTHO05D004509 5.6e-39 164.9 142 62.7
PGSC0003DMG400018339 Solanum tuberosum HOM05D003772 ORTHO05D004509 7.3e-39 164.5 150 59.3
TAR626G1598 Trochodendron aralioides HOM05D003772 ORTHO05D004509 1.2e-38 163.7 139 66.2
Nn1g06533 Nelumbo nucifera HOM05D003772 ORTHO05D004509 1.6e-38 163.3 146 59.6
unitig_62.g23166 Utricularia gibba HOM05D003772 ORTHO05D004509 2.1e-38 162.9 146 59.6
SGA_v2.0_scaffold109G31121 Striga asiatica HOM05D003772 ORTHO05D004509 4.7e-38 161.8 167 55.1
HanXRQChr05g0143311 Helianthus annuus HOM05D003772 ORTHO05D004509 6.2e-38 161.4 149 57.7
Oeu007126.1 Olea europaea HOM05D003772 ORTHO05D004509 1.1e-37 160.6 149 60.4
Aa31LG2G22190 Aethionema arabicum HOM05D003772 ORTHO05D004509 1.4e-37 160.2 145 59.3
Solyc07g053930.1 Solanum lycopersicum HOM05D003772 ORTHO05D004509 1.4e-37 160.2 145 60.0
Aqoxy1G02411 Aquilegia oxysepala HOM05D003772 ORTHO05D004509 3.1e-37 159.1 147 56.5
PSO675G9105 Papaver somniferum HOM05D003772 ORTHO05D004509 4.0e-37 158.7 142 59.9
Sabra13G0108200 Salix brachista HOM05D003772 ORTHO05D004509 6.8e-37 157.9 136 64.7
AUR62042887 Chenopodium quinoa HOM05D003772 ORTHO05D004509 2.0e-36 156.4 144 62.5
Nn1g04097 Nelumbo nucifera HOM05D003772 ORTHO05D004509 7.5e-36 154.5 137 61.3
Sopen07g027910 Solanum pennellii HOM05D003772 ORTHO05D004509 1.3e-35 153.7 138 60.9
TAR624G0900 Trochodendron aralioides HOM05D003772 ORTHO05D004509 1.3e-35 153.7 154 55.2
Solyc10g008310.1 Solanum lycopersicum HOM05D003772 ORTHO05D004509 2.2e-35 152.9 139 57.6
PGSC0003DMG400013145 Solanum tuberosum HOM05D003772 ORTHO05D004509 2.9e-35 152.5 140 57.1
ATR0824G095 Amborella trichopoda HOM05D003772 ORTHO05D004509 4.1e-34 148.7 145 56.6
DCAR_013015 Daucus carota HOM05D003772 ORTHO05D004509 9.2e-34 147.5 137 59.9
HPP92_021377 Vanilla planifolia HOM05D003772 ORTHO05D004509 2.1e-33 146.4 140 60.0
CSS0009217 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 6.0e-33 144.8 137 57.7
Lalb_Chr22g0356581 Lupinus albus HOM05D003772 ORTHO05D004509 1.0e-32 144.1 164 51.2
CSS0020254 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 3.0e-32 142.5 134 59.0
MBI06_g33538_MAGBIO Magnolia biondii HOM05D003772 ORTHO05D004509 6.6e-32 141.4 144 54.2
Oeu017493.1 Olea europaea HOM05D003772 ORTHO05D004509 4.3e-31 138.7 145 56.6
CiPaw.03G178000 Carya illinoinensis HOM05D003772 ORTHO05D004509 4.7e-30 135.2 162 51.9
PSO541G0621 Papaver somniferum HOM05D003772 ORTHO05D004509 4.7e-30 135.2 125 58.4
BcaC07g38325 Brassica carinata HOM05D003772 ORTHO05D004509 8.1e-30 134.4 142 53.5
C08p10800 Brassica napus HOM05D003772 ORTHO05D004509 8.1e-30 134.4 142 53.5
Eucgr.A01826 Eucalyptus grandis HOM05D003772 ORTHO05D004509 2.3e-29 132.9 149 51.7
Lsat_1_v5_gn_8_135800 Lactuca sativa HOM05D003772 ORTHO05D004509 2.3e-29 132.9 156 53.8
Zm00001eb163400 Zea mays HOM05D003772 ORTHO05D004509 6.8e-29 131.3 163 50.3
Cfa014621 Carpinus fangiana HOM05D003772 ORTHO05D004509 1.2e-28 130.6 98 73.5
Ah.11g049030 Amaranthus hybridus HOM05D003772 ORTHO05D004509 5.8e-28 128.3 116 62.1
Os12g0295600 Oryza sativa ssp. japonica HOM05D003772 ORTHO05D004509 9.9e-28 127.5 169 47.9
Nitab4.5_0011784g0020 Nicotiana tabacum HOM05D003772 ORTHO05D004509 2.2e-27 126.3 131 55.0
CSS0025212 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 2.9e-27 125.9 124 57.3
QL08p038995 Quercus lobata HOM05D003772 ORTHO05D004509 6.4e-27 124.8 92 69.6
BolC8t48755H Brassica oleracea HOM05D003772 ORTHO05D004509 2.4e-26 122.9 143 52.4
Ah.14g082650 Amaranthus hybridus HOM05D003772 ORTHO05D004509 4.1e-26 122.1 116 58.6
PGR142G3565 Punica granatum HOM05D003772 ORTHO05D004509 2.7e-25 119.4 140 52.9
Eucgr.A01824 Eucalyptus grandis HOM05D003772 ORTHO05D004509 6.0e-25 118.2 106 60.4
Nitab4.5_0014741g0030 Nicotiana tabacum HOM05D003772 ORTHO05D004509 6.0e-25 118.2 101 62.4
Nitab4.5_0000638g0260 Nicotiana tabacum HOM05D003772 ORTHO05D004509 1.0e-24 117.5 100 63.0
HPP92_020246 Vanilla planifolia HOM05D003772 ORTHO05D004509 1.3e-24 117.1 143 52.4
HanXRQChr17g0555101 Helianthus annuus HOM05D003772 ORTHO05D004509 1.7e-24 116.7 139 48.2
CSS0031333 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 1.9e-23 113.2 95 65.3
Eucgr.K01033 Eucalyptus grandis HOM05D003772 ORTHO05D004509 2.5e-23 112.8 162 46.9
Nn2g11445 Nelumbo nucifera HOM05D003772 ORTHO05D004509 1.2e-22 110.5 145 45.5
Rhsim13G0122200 Rhododendron simsii HOM05D003772 ORTHO05D004509 2.0e-20 103.2 111 55.0
BcaB03g12567 Brassica carinata HOM05D003772 ORTHO05D004509 3.8e-19 99.0 142 48.6
CDE09G0587 Ceratophyllum demersum HOM05D003772 ORTHO05D004509 2.7e-17 92.8 113 49.6
DCAR_019180 Daucus carota HOM05D003772 ORTHO05D004509 1.0e-16 90.9 119 46.2
Sopen10g004170 Solanum pennellii HOM05D000002 ORTHO05D000001 1.5e-15 87.0 89 56.2
vmacro00494 Vaccinium macrocarpon HOM05D003772 ORTHO05D004509 4.8e-14 82.0 126 46.8
SalBow8G1020 Salvia bowleyana HOM05D003772 ORTHO05D004509 1.4e-13 80.5 72 59.7
unitig_52.g17351 Utricularia gibba HOM05D003772 ORTHO05D004509 1.2e-12 77.4 76 55.3
Nn4g24929 Nelumbo nucifera HOM05D003772 ORTHO05D004509 3.2e-10 69.3 103 41.7
Rhsim06G0141600 Rhododendron simsii HOM05D003772 ORTHO05D004509 3.2e-10 69.3 56 60.7
PGSC0003DMG400000773 Solanum tuberosum HOM05D001192 ORTHO05D051357 3.9e-08 62.4 45 66.7
Lj5A129G68 Lonicera japonica HOM05D003772 ORTHO05D010346 2.5e-07 59.7 76 51.3
DCAR_021586 Daucus carota HOM05D003772 ORTHO05D004509 3.3e-07 59.3 72 52.8
ClCG02G017670 Citrullus lanatus HOM05D003772 ORTHO05D004509 4.3e-07 58.9 74 54.1
CsaV3_6G012890 Cucumis sativus L. HOM05D003772 ORTHO05D004509 7.4e-07 58.2 86 50.0
Nn2g13184 Nelumbo nucifera HOM05D003772 ORTHO05D004509 9.6e-07 57.8 56 51.8
vmacro19302 Vaccinium macrocarpon HOM05D008378 ORTHO05D010346 1.6e-06 57.0 73 50.7
Rhsim08G0177400 Rhododendron simsii HOM05D008378 ORTHO05D010346 2.1e-06 56.6 142 37.3
SalBow6G1615 Salvia bowleyana HOM05D008378 ORTHO05D010346 4.8e-06 55.5 89 46.1
CiPaw.11G020600 Carya illinoinensis HOM05D008378 ORTHO05D010346 6.2e-06 55.1 70 50.0
MELO3C013623.2 Cucumis melo HOM05D003772 ORTHO05D004509 6.2e-06 55.1 60 53.3
PGSC0003DMG400021302 Solanum tuberosum HOM05D001192 ORTHO05D051357 6.2e-06 55.1 45 62.2
ECA247G3718 Erigeron canadensis HOM05D000048 ORTHO05D000207 8.1e-06 54.7 79 48.1


User provided reference genes

Program Settings