Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p52400 Brassica napus HOM05D004826 ORTHO05D042801 4.6e-27 124.0 71 100.0
BcaC07g42266 Brassica carinata HOM05D004826 ORTHO05D002453 2.9e-13 78.2 61 73.8
C08p52920 Brassica napus HOM05D004826 ORTHO05D002453 2.9e-13 78.2 61 73.8
BolC8t52808H Brassica oleracea HOM05D004826 ORTHO05D002453 2.9e-13 78.2 61 73.8
BraA09t42133Z Brassica rapa HOM05D004826 ORTHO05D006367 2.9e-13 78.2 48 89.6
BraA09t42171Z Brassica rapa HOM05D004826 ORTHO05D002453 3.7e-13 77.8 48 85.4
A09p67980 Brassica napus HOM05D004826 ORTHO05D006367 1.9e-12 75.5 51 84.3
AT1G03110 Arabidopsis thaliana HOM05D004826 ORTHO05D006367 9.2e-12 73.2 51 76.5
A09p68350 Brassica napus HOM05D004826 ORTHO05D002453 9.2e-12 73.2 48 83.3
Carub.0001s0225 Capsella rubella HOM05D004826 ORTHO05D006367 1.2e-11 72.8 59 69.5
Thhalv10007706m.g Eutrema salsugineum HOM05D004826 ORTHO05D006367 1.6e-11 72.4 61 68.9
C05p01720 Brassica napus HOM05D004826 ORTHO05D006367 4.6e-11 70.9 46 80.4
BolC5t28951H Brassica oleracea HOM05D004826 ORTHO05D006367 4.6e-11 70.9 46 80.4
CARHR002460 Cardamine hirsuta HOM05D004826 ORTHO05D006367 4.6e-11 70.9 61 67.2
A10p01740 Brassica napus HOM05D004826 ORTHO05D006367 6.0e-11 70.5 46 78.3
BraA10t42449Z Brassica rapa HOM05D004826 ORTHO05D006367 6.0e-11 70.5 46 78.3
AL1G12580 Arabidopsis lyrata HOM05D004826 ORTHO05D006367 7.8e-11 70.1 60 68.3
Aa31LG1G9410 Aethionema arabicum HOM05D004826 ORTHO05D006367 8.6e-10 66.6 45 73.3
Sp1g02120 Schrenkiella parvula HOM05D004826 ORTHO05D006367 8.6e-10 66.6 61 65.6
BolC8t52769H Brassica oleracea HOM05D004826 ORTHO05D042801 1.9e-09 65.5 34 100.0
A08p37480 Brassica napus HOM05D004826 ORTHO05D006367 3.3e-09 64.7 46 71.7
C08p00410 Brassica napus HOM05D004826 ORTHO05D006367 3.3e-09 64.7 46 71.7
BolC8t46840H Brassica oleracea HOM05D004826 ORTHO05D006367 3.3e-09 64.7 46 71.7
BraA08t35646Z Brassica rapa HOM05D004826 ORTHO05D006367 3.3e-09 64.7 46 71.7
THA.LOC104801247 Tarenaya hassleriana HOM05D004826 ORTHO05D006367 2.1e-08 62.0 45 71.1
COL.COLO4_09064 Corchorus olitorius HOM05D004826 ORTHO05D003095 8.1e-08 60.1 62 54.8
TWI75G1621 Tripterygium wilfordii HOM05D004826 ORTHO05D006367 1.8e-07 58.9 61 55.7
Ciclev10020269m.g Citrus clementina HOM05D004826 ORTHO05D006367 2.4e-07 58.5 61 47.5
Haze_04685 Corylus avellana HOM05D004826 ORTHO05D006367 2.4e-07 58.5 62 51.6
CsaV3_7G027950 Cucumis sativus L. HOM05D004826 ORTHO05D006367 5.2e-07 57.4 60 51.7
PGR044G1874 Punica granatum HOM05D004826 ORTHO05D006367 8.9e-07 56.6 44 63.6
MELO3C015814.2 Cucumis melo HOM05D004826 ORTHO05D006367 1.2e-06 56.2 44 59.1
GSVIVG01001175001 Vitis vinifera HOM05D004826 ORTHO05D006367 1.2e-06 56.2 62 53.2
Cpa.g.sc2545.1 Carica papaya HOM05D004826 ORTHO05D006367 2.0e-06 55.5 44 61.4
ClCG09G007220 Citrullus lanatus HOM05D004826 ORTHO05D006367 2.6e-06 55.1 61 52.5
Thecc.01G275300 Theobroma cacao HOM05D004826 ORTHO05D006367 2.6e-06 55.1 62 53.2
CiPaw.07G089800 Carya illinoinensis HOM05D004826 ORTHO05D006367 3.4e-06 54.7 44 59.1
Duzib138G1281 Durio zibethinus HOM05D004826 ORTHO05D006367 3.4e-06 54.7 62 51.6
Gohir.A12G004300 Gossypium hirsutum HOM05D004826 ORTHO05D006367 3.4e-06 54.7 62 50.0
Gohir.D12G004000 Gossypium hirsutum HOM05D004826 ORTHO05D006367 3.4e-06 54.7 62 50.0
Gorai.008G003800 Gossypium raimondii HOM05D004826 ORTHO05D006367 3.4e-06 54.7 62 50.0
MD11G1282600 Malus domestica HOM05D004826 ORTHO05D006367 3.4e-06 54.7 62 46.8
Manes.05G079700 Manihot esculenta HOM05D004826 ORTHO05D006367 3.4e-06 54.7 62 48.4
Sed0001689 Sechium edule HOM05D004826 ORTHO05D006367 3.4e-06 54.7 61 54.1
FAN20G2615 Fragaria x ananassa HOM05D004826 ORTHO05D006367 7.6e-06 53.5 49 51.0
Hma1.2p1_0822F.1_g224300 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 7.6e-06 53.5 44 56.8
Hma1.2p1_0822F.1_g224310 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 7.6e-06 53.5 44 56.8


User provided reference genes

Program Settings