Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p52150 Brassica napus HOM05D006910 ORTHO05D008937 4.3e-101 371.3 188 100.0
BolC8t52749H Brassica oleracea HOM05D006910 ORTHO05D008937 9.4e-96 353.6 181 98.9
Thhalv10008199m.g Eutrema salsugineum HOM05D006910 ORTHO05D008937 5.2e-54 214.9 187 60.4
Sp1g03360 Schrenkiella parvula HOM05D006910 ORTHO05D008937 9.8e-53 210.7 175 64.6
BraA10t42564Z Brassica rapa HOM05D006910 ORTHO05D008937 9.2e-51 204.1 167 64.1
A10p02950 Brassica napus HOM05D006910 ORTHO05D008937 1.2e-50 203.8 167 64.1
AT1G04530 Arabidopsis thaliana HOM05D006910 ORTHO05D008937 5.9e-50 201.4 179 62.0
AL1G14180 Arabidopsis lyrata HOM05D006910 ORTHO05D008937 1.0e-49 200.7 182 59.9
CARHR003870 Cardamine hirsuta HOM05D006910 ORTHO05D008937 1.0e-49 200.7 197 57.4
BolC5t29051H Brassica oleracea HOM05D006910 ORTHO05D008937 1.1e-46 190.7 165 61.8
Carub.0001s0374 Capsella rubella HOM05D006910 ORTHO05D008937 5.2e-46 188.3 162 60.5
C05p02700 Brassica napus HOM05D006910 ORTHO05D008937 1.3e-44 183.7 164 61.6
Aa31LG1G20340 Aethionema arabicum HOM05D006910 ORTHO05D008937 4.1e-43 178.7 175 56.6
THA.LOC104826095 Tarenaya hassleriana HOM05D006910 ORTHO05D008937 2.3e-33 146.4 135 55.6
THA.LOC104801064 Tarenaya hassleriana HOM05D006910 ORTHO05D008937 1.5e-32 143.7 127 54.3
FAN12G3461 Fragaria x ananassa HOM05D006910 ORTHO05D008937 3.1e-22 109.4 151 41.7
FAN22G1859 Fragaria x ananassa HOM05D006910 ORTHO05D008937 3.1e-22 109.4 151 41.1
FAN17G1396 Fragaria x ananassa HOM05D006910 ORTHO05D008937 5.2e-22 108.6 152 40.8
FvH4_4g04670 Fragaria vesca HOM05D006910 ORTHO05D008937 9.0e-22 107.8 151 41.7
Sabra08G0131500 Salix brachista HOM05D006910 ORTHO05D008937 4.9e-20 102.1 158 38.0
Ah.13g074730 Amaranthus hybridus HOM05D006910 ORTHO05D008937 1.9e-19 100.1 157 38.9
Duzib151G0386 Durio zibethinus HOM05D006910 ORTHO05D008937 1.9e-19 100.1 155 37.4
Potri.010G065400 Populus trichocarpa HOM05D006910 ORTHO05D008937 2.4e-19 99.8 184 32.6
RcHm_v2.0_Chr4g0395481 Rosa chinensis HOM05D006910 ORTHO05D008937 2.4e-19 99.8 120 43.3
Cpa.g.sc59.4 Carica papaya HOM05D006910 ORTHO05D008937 3.2e-19 99.4 154 38.3
AUR62015241 Chenopodium quinoa HOM05D006910 ORTHO05D008937 5.4e-19 98.6 170 37.6
COL.COLO4_15971 Corchorus olitorius HOM05D006910 ORTHO05D008937 1.6e-18 97.1 159 37.7
Ciclev10004771m.g Citrus clementina HOM05D006910 ORTHO05D008937 3.5e-18 95.9 153 38.6
QL06p021124 Quercus lobata HOM05D006910 ORTHO05D008937 7.8e-18 94.7 172 34.9
Manes.03G158500 Manihot esculenta HOM05D006910 ORTHO05D008937 1.0e-17 94.4 151 37.7
Psat6g131280 Pisum sativum HOM05D006910 ORTHO05D008937 1.0e-17 94.4 114 40.4
Thecc.04G265400 Theobroma cacao HOM05D006910 ORTHO05D008937 1.0e-17 94.4 157 38.2
Gorai.011G179800 Gossypium raimondii HOM05D006910 ORTHO05D008937 3.9e-17 92.4 137 40.1
VMungo0720G1174 Vigna mungo HOM05D006910 ORTHO05D008937 3.9e-17 92.4 127 41.7
Atru.chr4.1910 Acer truncatum HOM05D006910 ORTHO05D008937 5.1e-17 92.0 196 32.7
Glyma.20G199800 Glycine max HOM05D006910 ORTHO05D008937 8.7e-17 91.3 127 42.5
Gohir.A10G107300 Gossypium hirsutum HOM05D006910 ORTHO05D008937 1.1e-16 90.9 137 40.1
Prupe.1G049000 Prunus persica HOM05D006910 ORTHO05D008937 2.5e-16 89.7 158 34.8
Sabra10G0041700 Salix brachista HOM05D006910 ORTHO05D008937 2.5e-16 89.7 131 40.5
Glyma.10G190700 Glycine max HOM05D006910 ORTHO05D008937 3.3e-16 89.4 127 42.5
Lj5g0027299 Lotus japonicus HOM05D006910 ORTHO05D008937 3.3e-16 89.4 125 41.6
CiPaw.01G177500 Carya illinoinensis HOM05D006910 ORTHO05D008937 7.3e-16 88.2 110 42.7
Gohir.D10G160000 Gossypium hirsutum HOM05D006910 ORTHO05D008937 9.6e-16 87.8 129 41.1
MD16G1226800 Malus domestica HOM05D006910 ORTHO05D008937 1.3e-15 87.4 185 35.1
Phvul.011G133545 Phaseolus vulgaris HOM05D006910 ORTHO05D008937 2.1e-15 86.7 140 37.1
PGR031G1691 Punica granatum HOM05D006910 ORTHO05D008937 2.1e-15 86.7 131 38.2
PGR031G1888 Punica granatum HOM05D006910 ORTHO05D008937 2.1e-15 86.7 131 38.2
arahy.Tifrunner.gnm1.ann1.YFRU1Z Arachis hypogaea HOM05D006910 ORTHO05D008937 4.8e-15 85.5 153 35.3
Medtr1g073230 Medicago truncatula HOM05D006910 ORTHO05D008937 8.1e-15 84.7 126 38.9
arahy.Tifrunner.gnm1.ann1.DX8ZNF Arachis hypogaea HOM05D006910 ORTHO05D008937 1.4e-14 84.0 155 34.8
CAN.G638.37 Capsicum annuum HOM05D006910 ORTHO05D008937 1.8e-14 83.6 167 32.3
Hund20492 Selenicereus undatus HOM05D006910 ORTHO05D008937 4.0e-14 82.4 172 30.8
Sc13g0003110 Simmondsia chinensis HOM05D006910 ORTHO05D008937 4.0e-14 82.4 154 32.5
Peaxi162Scf00319g00521 Petunia axillaris HOM05D006910 ORTHO05D008937 1.2e-13 80.9 140 37.1
Eucgr.H00126 Eucalyptus grandis HOM05D006910 ORTHO05D008937 2.0e-13 80.1 101 38.6
CANSAT78G1020 Cannabis sativa HOM05D006910 ORTHO05D008937 3.4e-13 79.3 148 36.5
MD13G1221900 Malus domestica HOM05D006910 ORTHO05D008937 3.4e-13 79.3 157 35.7
EL10Ac3g06675 Beta vulgaris HOM05D006910 ORTHO05D008937 4.5e-13 79.0 148 35.1
Dinv29800 Davidia involucrata HOM05D006910 ORTHO05D008937 2.2e-12 76.6 103 39.8
CSS0021483 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 4.9e-12 75.5 145 34.5
DCAR_027350 Daucus carota HOM05D006910 ORTHO05D008937 4.9e-12 75.5 160 31.9
Lsat_1_v5_gn_6_66101 Lactuca sativa HOM05D006910 ORTHO05D008937 4.9e-12 75.5 135 37.0
PGSC0003DMG400013458 Solanum tuberosum HOM05D006910 ORTHO05D008937 8.4e-12 74.7 167 31.1
TWI53G1612 Tripterygium wilfordii HOM05D006910 ORTHO05D008937 4.2e-11 72.4 120 37.5
Migut.G00574 Erythranthe guttata HOM05D006910 ORTHO05D008937 5.4e-11 72.0 142 32.4
Sopen03g001720 Solanum pennellii HOM05D006910 ORTHO05D008937 7.1e-11 71.6 156 30.8
Potri.008G172200 Populus trichocarpa HOM05D006910 ORTHO05D008937 1.6e-10 70.5 82 43.9
Actinidia39932 Actinidia chinensis HOM05D006910 ORTHO05D008937 2.1e-10 70.1 156 34.0
HanXRQChr01g0023021 Helianthus annuus HOM05D006910 ORTHO05D008937 2.7e-10 69.7 127 37.0
Nitab4.5_0000592g0430 Nicotiana tabacum HOM05D006910 ORTHO05D008937 2.7e-10 69.7 77 48.1
PGSC0003DMG400001551 Solanum tuberosum HOM05D006910 ORTHO05D008937 6.0e-10 68.6 154 33.1
Hma1.2p1_0112F.1_g054780 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 7.9e-10 68.2 160 30.0
Lsat_1_v5_gn_1_75580 Lactuca sativa HOM05D006910 ORTHO05D008937 7.9e-10 68.2 63 50.8
CSS0027831 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 1.0e-09 67.8 126 35.7
CSS0004989 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 1.8e-09 67.0 79 40.5
Nitab4.5_0000355g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 1.8e-09 67.0 161 27.3
Sopen09g033910 Solanum pennellii HOM05D006910 ORTHO05D008937 1.8e-09 67.0 84 41.7
Nitab4.5_0006344g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 2.3e-09 66.6 129 33.3
Lalb_Chr06g0169541 Lupinus albus HOM05D006910 ORTHO05D008937 3.0e-09 66.2 121 33.9
ECA248G3309 Erigeron canadensis HOM05D006910 ORTHO05D008937 5.1e-09 65.5 71 42.3
vmacro15481 Vaccinium macrocarpon HOM05D006910 ORTHO05D008937 5.1e-09 65.5 128 34.4
Haze_11463 Corylus avellana HOM05D006910 ORTHO05D008937 6.7e-09 65.1 178 30.3
MSTRG.4175 Avicennia marina HOM05D006910 ORTHO05D008937 1.1e-08 64.3 153 24.8
TPR.G18548 Trifolium pratense HOM05D006910 ORTHO05D008937 1.5e-08 63.9 82 40.2
AUR62025443 Chenopodium quinoa HOM05D006910 ORTHO05D008937 3.3e-08 62.8 81 34.6
Ca_09799_v3 Cicer arietinum L. HOM05D006910 ORTHO05D008937 4.3e-08 62.4 72 44.4
GSVIVG01027919001 Vitis vinifera HOM05D006910 ORTHO05D008937 4.3e-08 62.4 119 31.1
Lj6C621T3 Lonicera japonica HOM05D006910 ORTHO05D008937 9.6e-08 61.2 133 35.3
Nitab4.5_0002210g0060 Nicotiana tabacum HOM05D006910 ORTHO05D008937 9.6e-08 61.2 55 52.7
SGA_v2.0_scaffold67G22680 Striga asiatica HOM05D006910 ORTHO05D008937 9.6e-08 61.2 70 38.6
EL10Ac7g17683 Beta vulgaris HOM05D007706 ORTHO05D009593 1.6e-07 60.5 84 38.1
CAN.G524.13 Capsicum annuum HOM05D006910 ORTHO05D008937 1.6e-07 60.5 92 42.4
Cc03_g06380 Coffea canephora HOM05D006910 ORTHO05D008937 2.8e-07 59.7 94 37.2
Aqoxy5G00146 Aquilegia oxysepala HOM05D007706 ORTHO05D009593 4.8e-07 58.9 124 33.1
Phvul.001G164700 Phaseolus vulgaris HOM05D007706 ORTHO05D009593 4.8e-07 58.9 71 42.3
Solyc09g090930.3 Solanum lycopersicum HOM05D006910 ORTHO05D008937 1.4e-06 57.4 94 40.4
CDE11G0528 Ceratophyllum demersum HOM05D007706 ORTHO05D009593 1.8e-06 57.0 125 33.6
Dinv27116 Davidia involucrata HOM05D006910 ORTHO05D008937 2.4e-06 56.6 62 43.5
Actinidia37550 Actinidia chinensis HOM05D006910 ORTHO05D008937 4.0e-06 55.8 103 32.0


User provided reference genes

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