Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p51920 Brassica napus HOM05D006996 ORTHO05D008961 7.7e-48 193.4 89 100.0
BolC8t52723H Brassica oleracea HOM05D006996 ORTHO05D008961 7.7e-48 193.4 89 100.0
BraA09t42088Z Brassica rapa HOM05D006996 ORTHO05D008961 7.7e-48 193.4 89 100.0
BcaC07g42146 Brassica carinata HOM05D006996 ORTHO05D008961 1.7e-47 192.2 89 98.9
Thhalv10009219m.g Eutrema salsugineum HOM05D006996 ORTHO05D008961 2.5e-46 188.3 86 98.8
Sp1g04060 Schrenkiella parvula HOM05D006996 ORTHO05D008961 2.5e-46 188.3 86 98.8
SpUn0024_0080 Schrenkiella parvula HOM05D006996 ORTHO05D008961 2.5e-46 188.3 86 98.8
AL1G14970 Arabidopsis lyrata HOM05D006996 ORTHO05D008961 4.2e-46 187.6 87 97.7
A10p03740 Brassica napus HOM05D006996 ORTHO05D008961 7.2e-46 186.8 86 97.7
C05p03440 Brassica napus HOM05D006996 ORTHO05D008961 7.2e-46 186.8 86 97.7
BolC5t29123H Brassica oleracea HOM05D006996 ORTHO05D008961 7.2e-46 186.8 86 97.7
BraA10t42647Z Brassica rapa HOM05D006996 ORTHO05D008961 7.2e-46 186.8 86 97.7
Aa31LG1G19540 Aethionema arabicum HOM05D006996 ORTHO05D008961 2.1e-45 185.3 86 96.5
Carub.0001s0448 Capsella rubella HOM05D006996 ORTHO05D008961 2.1e-45 185.3 86 95.3
AT1G05205 Arabidopsis thaliana HOM05D006996 ORTHO05D008961 2.7e-45 184.9 87 95.4
CARHR004680 Cardamine hirsuta HOM05D006996 ORTHO05D008961 1.5e-43 179.1 88 92.0
Eucgr.A01713 Eucalyptus grandis HOM05D006996 ORTHO05D008961 7.0e-41 170.2 87 88.5
CiPaw.03G161100 Carya illinoinensis HOM05D006996 ORTHO05D008961 1.2e-40 169.5 87 87.4
PGR042G2836 Punica granatum HOM05D006996 ORTHO05D008961 4.5e-40 167.5 87 86.2
CANSAT64G1676 Cannabis sativa HOM05D006996 ORTHO05D008961 5.9e-40 167.2 87 85.1
MD09G1069700 Malus domestica HOM05D006996 ORTHO05D008961 5.9e-40 167.2 87 87.4
MD17G1095900 Malus domestica HOM05D006996 ORTHO05D008961 5.9e-40 167.2 87 87.4
Ciclev10017328m.g Citrus clementina HOM05D006996 ORTHO05D008961 7.7e-40 166.8 87 86.2
THA.LOC104800987 Tarenaya hassleriana HOM05D006996 ORTHO05D008961 7.7e-40 166.8 87 89.7
QL08p033312 Quercus lobata HOM05D006996 ORTHO05D008961 1.0e-39 166.4 87 86.2
FvH4_6g43320 Fragaria vesca HOM05D006996 ORTHO05D008961 1.3e-39 166.0 87 85.1
FAN14G3455 Fragaria x ananassa HOM05D006996 ORTHO05D008961 1.3e-39 166.0 87 85.1
Prupe.3G218000 Prunus persica HOM05D006996 ORTHO05D008961 1.3e-39 166.0 87 86.2
arahy.Tifrunner.gnm1.ann1.7T5QAW Arachis hypogaea HOM05D006996 ORTHO05D008961 1.7e-39 165.6 85 89.4
arahy.Tifrunner.gnm1.ann1.BHY6M8 Arachis hypogaea HOM05D006996 ORTHO05D008961 1.7e-39 165.6 85 89.4
arahy.Tifrunner.gnm1.ann1.MSE8LU Arachis hypogaea HOM05D006996 ORTHO05D008961 1.7e-39 165.6 85 89.4
arahy.Tifrunner.gnm1.ann1.QWF8TS Arachis hypogaea HOM05D006996 ORTHO05D008961 1.7e-39 165.6 85 89.4
Gohir.A02G139400 Gossypium hirsutum HOM05D006996 ORTHO05D008961 1.7e-39 165.6 87 83.9
Gohir.D03G050100 Gossypium hirsutum HOM05D006996 ORTHO05D008961 1.7e-39 165.6 87 83.9
Gorai.003G051600 Gossypium raimondii HOM05D006996 ORTHO05D008961 1.7e-39 165.6 87 83.9
RcHm_v2.0_Chr2g0159651 Rosa chinensis HOM05D006996 ORTHO05D008961 1.7e-39 165.6 87 85.1
FAN05G4357 Fragaria x ananassa HOM05D006996 ORTHO05D008961 3.8e-39 164.5 87 83.9
FAN02G2509 Fragaria x ananassa HOM05D006996 ORTHO05D008961 1.9e-38 162.2 87 83.9
Sed0014620 Sechium edule HOM05D006996 ORTHO05D008961 2.5e-38 161.8 87 83.9
Thecc.05G208500 Theobroma cacao HOM05D006996 ORTHO05D008961 2.5e-38 161.8 82 87.8
Cfa014416 Carpinus fangiana HOM05D006996 ORTHO05D008961 3.2e-38 161.4 87 82.8
Migut.M00413 Erythranthe guttata HOM05D006996 ORTHO05D008961 3.2e-38 161.4 88 87.5
CsaV3_7G003680 Cucumis sativus L. HOM05D006996 ORTHO05D008961 5.5e-38 160.6 87 82.8
Manes.13G070800 Manihot esculenta HOM05D006996 ORTHO05D008961 5.5e-38 160.6 87 80.5
Nitab4.5_0007092g0010 Nicotiana tabacum HOM05D006996 ORTHO05D008961 5.5e-38 160.6 86 87.2
TPR.G4182 Trifolium pratense HOM05D006996 ORTHO05D008961 5.5e-38 160.6 89 85.4
Dinv39702 Davidia involucrata HOM05D006996 ORTHO05D008961 7.2e-38 160.2 84 84.5
Duzib128G0982 Durio zibethinus HOM05D006996 ORTHO05D008961 7.2e-38 160.2 87 80.5
ClCG02G001860 Citrullus lanatus HOM05D006996 ORTHO05D008961 1.2e-37 159.5 87 82.8
Peaxi162Scf00007g00930 Petunia axillaris HOM05D006996 ORTHO05D008961 1.6e-37 159.1 87 87.4
MELO3C018811.2 Cucumis melo HOM05D006996 ORTHO05D008961 2.1e-37 158.7 85 83.5
Sopen07g026050 Solanum pennellii HOM05D006996 ORTHO05D008961 2.1e-37 158.7 82 89.0
Medtr2g088460 Medicago truncatula HOM05D006996 ORTHO05D008961 4.7e-37 157.5 82 86.6
Solyc07g052420.3 Solanum lycopersicum HOM05D006996 ORTHO05D008961 4.7e-37 157.5 82 86.6
PGSC0003DMG400025488 Solanum tuberosum HOM05D006996 ORTHO05D008961 4.7e-37 157.5 82 87.8
Cc05_g04850 Coffea canephora HOM05D006996 ORTHO05D008961 6.1e-37 157.1 87 82.8
TWI18G0629 Tripterygium wilfordii HOM05D006996 ORTHO05D008961 6.1e-37 157.1 87 80.5
MSTRG.6557 Avicennia marina HOM05D006996 ORTHO05D008961 8.0e-37 156.8 87 86.2
Glyma.12G194300 Glycine max HOM05D006996 ORTHO05D008961 8.0e-37 156.8 84 84.5
PSO541G2316 Papaver somniferum HOM05D006996 ORTHO05D008961 8.0e-37 156.8 85 85.9
PSO675G8615 Papaver somniferum HOM05D006996 ORTHO05D008961 8.0e-37 156.8 85 85.9
Zm00001eb100890 Zea mays HOM05D006996 ORTHO05D008961 8.0e-37 156.8 89 82.0
Zm00001eb209620 Zea mays HOM05D006996 ORTHO05D008961 8.0e-37 156.8 89 82.0
Aqoxy1G03305 Aquilegia oxysepala HOM05D006996 ORTHO05D008961 1.0e-36 156.4 84 79.8
Nitab4.5_0002137g0190 Nicotiana tabacum HOM05D006996 ORTHO05D008961 1.0e-36 156.4 87 86.2
Dinv05447 Davidia involucrata HOM05D006996 ORTHO05D008961 1.4e-36 156.0 84 83.3
GSVIVG01012649001 Vitis vinifera HOM05D006996 ORTHO05D008961 1.4e-36 156.0 84 82.1
CSS0007447 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 1.8e-36 155.6 86 80.2
Lj3g0015321 Lotus japonicus HOM05D006996 ORTHO05D008961 3.0e-36 154.8 81 87.7
Hma1.2p1_0957F.1_g241430 Hydrangea macrophylla HOM05D006996 ORTHO05D008961 5.2e-36 154.1 84 82.1
Oeu027249.1 Olea europaea HOM05D006996 ORTHO05D008961 8.8e-36 153.3 87 81.6
Sabra18G0080400 Salix brachista HOM05D006996 ORTHO05D008961 8.8e-36 153.3 81 82.7
CSS0016840 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 1.1e-35 152.9 86 79.1
Lj1A759T40 Lonicera japonica HOM05D006996 ORTHO05D008961 1.5e-35 152.5 87 79.3
Lj1A760T24 Lonicera japonica HOM05D006996 ORTHO05D008961 1.5e-35 152.5 87 79.3
CAN.G846.6 Capsicum annuum HOM05D006996 ORTHO05D008961 2.6e-35 151.8 82 82.9
Potri.018G093501 Populus trichocarpa HOM05D006996 ORTHO05D008961 2.6e-35 151.8 81 81.5
Lsat_1_v5_gn_5_163860 Lactuca sativa HOM05D006996 ORTHO05D008961 5.7e-35 150.6 83 83.1
Ah.11g047700 Amaranthus hybridus HOM05D006996 ORTHO05D008961 9.7e-35 149.8 82 81.7
Glyma.13G308300 Glycine max HOM05D006996 ORTHO05D008961 1.7e-34 149.1 84 81.0
unitig_21.g20728 Utricularia gibba HOM05D006996 ORTHO05D008961 1.7e-34 149.1 79 83.5
ECA248G0348 Erigeron canadensis HOM05D006996 ORTHO05D008961 2.2e-34 148.7 87 78.2
CDE05G0144 Ceratophyllum demersum HOM05D006996 ORTHO05D008961 3.7e-34 147.9 85 80.0
EL10Ac5g11141 Beta vulgaris HOM05D006996 ORTHO05D008961 4.8e-34 147.5 82 80.5
HPP92_011134 Vanilla planifolia HOM05D006996 ORTHO05D008961 4.8e-34 147.5 88 79.5
HanXRQChr11g0350381 Helianthus annuus HOM05D006996 ORTHO05D008961 6.3e-34 147.1 87 81.6
Phvul.005G114700 Phaseolus vulgaris HOM05D006996 ORTHO05D008961 8.2e-34 146.7 90 75.6
CDE11G0800 Ceratophyllum demersum HOM05D006996 ORTHO05D008961 1.1e-33 146.4 87 78.2
Hund01114 Selenicereus undatus HOM05D006996 ORTHO05D008961 1.8e-33 145.6 87 79.3
vmacro09127 Vaccinium macrocarpon HOM05D006996 ORTHO05D008961 1.8e-33 145.6 86 75.6
Actinidia30517 Actinidia chinensis HOM05D006996 ORTHO05D008961 3.1e-33 144.8 84 79.8
AUR62021549 Chenopodium quinoa HOM05D006996 ORTHO05D008961 2.6e-32 141.7 86 77.9
AUR62000730 Chenopodium quinoa HOM05D006996 ORTHO05D008961 5.9e-32 140.6 86 76.7
SalBow7G3715 Salvia bowleyana HOM05D006996 ORTHO05D008961 3.8e-31 137.9 87 75.9
Nn2g12174 Nelumbo nucifera HOM05D006996 ORTHO05D008961 5.0e-31 137.5 108 63.9
Lalb_Chr14g0375741 Lupinus albus HOM05D006996 ORTHO05D008961 1.1e-30 136.3 78 78.2
AUR62008544 Chenopodium quinoa HOM05D006996 ORTHO05D008961 7.2e-30 133.7 86 74.4
DCAR_014473 Daucus carota HOM05D006996 ORTHO05D008961 3.3e-27 124.8 65 89.2
CSS0029979 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 9.7e-27 123.2 68 79.4
Psat5g264240 Pisum sativum HOM05D006996 ORTHO05D008961 3.7e-26 121.3 64 85.9
TAR627G0363 Trochodendron aralioides HOM05D006996 ORTHO05D008961 8.3e-26 120.2 62 83.9
Sc12g0002320 Simmondsia chinensis HOM05D006996 ORTHO05D008961 9.1e-25 116.7 61 85.2
Lsat_1_v5_gn_4_184120 Lactuca sativa HOM05D006996 ORTHO05D008961 5.9e-24 114.0 61 82.0
COL.COLO4_06384 Corchorus olitorius HOM05D006996 ORTHO05D008961 5.7e-19 97.4 49 85.7
TAR676G0001 Trochodendron aralioides HOM05D006996 ORTHO05D008961 6.3e-18 94.0 56 71.4
Mapoly0024s0016 Marchantia polymorpha HOM05D006996 ORTHO05D008961 3.1e-17 91.7 63 58.7
BcaB01g06120 Brassica carinata HOM05D006996 ORTHO05D008961 5.0e-15 84.3 41 92.7
MCO13G082 Micromonas commoda HOM05D006996 ORTHO05D008961 5.0e-15 84.3 58 63.8
FAN09G4817 Fragaria x ananassa HOM05D006996 ORTHO05D008961 4.0e-12 74.7 38 86.8
SEGI_13346 Sequoiadendron giganteum HOM05D006996 ORTHO05D008961 5.2e-12 74.3 56 57.1
CSS0002917 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 2.0e-11 72.4 40 80.0
TPR.G35081 Trifolium pratense HOM05D006996 ORTHO05D048925 2.6e-11 72.0 41 80.5
CSS0018135 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 4.9e-10 67.8 40 72.5


User provided reference genes

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