Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p51140 Brassica napus HOM05D004564 ORTHO05D006106 0.0e+00 1643.6 880 100.0
BolC8t52640H Brassica oleracea HOM05D004564 ORTHO05D006106 0.0e+00 1632.5 898 98.0
A09p66910 Brassica napus HOM05D004564 ORTHO05D006106 0.0e+00 1491.1 915 89.3
BraA09t42026Z Brassica rapa HOM05D004564 ORTHO05D006106 0.0e+00 1469.9 944 86.4
Sp1g05350 Schrenkiella parvula HOM05D004564 ORTHO05D006106 0.0e+00 1450.3 916 86.5
BcaB02g06779 Brassica carinata HOM05D004564 ORTHO05D006106 0.0e+00 1449.9 916 85.6
A10p05220 Brassica napus HOM05D004564 ORTHO05D006106 0.0e+00 1440.2 916 85.2
C05p04820 Brassica napus HOM05D004564 ORTHO05D006106 0.0e+00 1440.2 922 85.1
BraA10t42789Z Brassica rapa HOM05D004564 ORTHO05D006106 0.0e+00 1434.1 923 84.5
BolC5t29255H Brassica oleracea HOM05D004564 ORTHO05D006106 0.0e+00 1426.8 922 84.2
AL1G16620 Arabidopsis lyrata HOM05D004564 ORTHO05D006106 0.0e+00 1421.0 918 84.6
AT1G06590 Arabidopsis thaliana HOM05D004564 ORTHO05D006106 0.0e+00 1409.4 918 83.8
Carub.0001s0595 Capsella rubella HOM05D004564 ORTHO05D006106 0.0e+00 1390.6 916 83.1
Thhalv10006743m.g Eutrema salsugineum HOM05D004564 ORTHO05D006106 0.0e+00 1371.3 916 82.0
Aa31LG1G7670 Aethionema arabicum HOM05D004564 ORTHO05D006106 0.0e+00 1364.4 915 80.8
THA.LOC104800817 Tarenaya hassleriana HOM05D004564 ORTHO05D006106 0.0e+00 1238.4 913 74.0
Prupe.3G177800 Prunus persica HOM05D004564 ORTHO05D006106 5.4e-311 1070.8 919 63.8
Thecc.01G168400 Theobroma cacao HOM05D004564 ORTHO05D006106 2.0e-310 1068.9 915 64.2
CiPaw.04G137200 Carya illinoinensis HOM05D004564 ORTHO05D006106 4.6e-310 1067.8 914 62.1
MD09G1148300 Malus domestica HOM05D004564 ORTHO05D006106 1.0e-309 1066.6 914 63.9
CsaV3_4G007910 Cucumis sativus L. HOM05D004564 ORTHO05D006106 4.0e-306 1054.7 918 60.7
Gorai.007G175000 Gossypium raimondii HOM05D004564 ORTHO05D006106 1.5e-305 1052.7 915 62.6
TWI59G1136 Tripterygium wilfordii HOM05D004564 ORTHO05D006106 1.7e-304 1049.3 919 59.8
CANSAT25G1027 Cannabis sativa HOM05D004564 ORTHO05D006106 4.9e-304 1047.7 915 62.0
Gohir.A11G157200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 1.9e-303 1045.8 915 62.3
CSS0004840 Camellia sinensis var. sinensis HOM05D004564 ORTHO05D006106 2.4e-303 1045.4 912 60.3
Gohir.D11G164200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 1.3e-301 1039.6 915 61.9
Phvul.008G194400 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 5.6e-300 1034.2 917 61.8
VMungo0647G1349 Vigna mungo HOM05D004564 ORTHO05D006106 7.3e-300 1033.9 915 61.3
Ca_06263_v3 Cicer arietinum L. HOM05D004564 ORTHO05D006106 1.6e-299 1032.7 958 59.7
Glyma.14G030500 Glycine max HOM05D004564 ORTHO05D006106 4.7e-299 1031.2 918 61.8
arahy.Tifrunner.gnm1.ann1.THQ3DC Arachis hypogaea HOM05D004564 ORTHO05D006106 1.4e-298 1029.6 918 61.5
QL08p045017 Quercus lobata HOM05D004564 ORTHO05D006106 5.2e-298 1027.7 991 56.8
RcHm_v2.0_Chr2g0152251 Rosa chinensis HOM05D004564 ORTHO05D006106 5.2e-298 1027.7 915 60.5
arahy.Tifrunner.gnm1.ann1.PNUX2Z Arachis hypogaea HOM05D004564 ORTHO05D006106 6.8e-298 1027.3 924 61.4
GSVIVG01020836001 Vitis vinifera HOM05D004564 ORTHO05D006106 3.4e-297 1025.0 917 60.2
TAR369G0268 Trochodendron aralioides HOM05D004564 ORTHO05D006106 1.7e-296 1022.7 911 60.5
Potri.004G081200 Populus trichocarpa HOM05D004564 ORTHO05D006106 1.6e-294 1016.1 908 59.3
FvH4_6g38720 Fragaria vesca HOM05D004564 ORTHO05D006106 2.7e-294 1015.4 915 59.9
Duzib133G1099 Durio zibethinus HOM05D004564 ORTHO05D006106 3.5e-294 1015.0 910 62.1
Manes.01G123700 Manihot esculenta HOM05D004564 ORTHO05D006106 1.3e-293 1013.1 910 59.0
Medtr5g091020 Medicago truncatula HOM05D004564 ORTHO05D006106 5.1e-293 1011.1 910 61.1
TPR.G10155 Trifolium pratense HOM05D004564 ORTHO05D006106 4.3e-292 1008.1 915 59.2
FAN09G3866 Fragaria x ananassa HOM05D004564 ORTHO05D006106 2.1e-291 1005.7 929 58.9
Actinidia32511 Actinidia chinensis HOM05D004564 ORTHO05D006106 6.2e-291 1004.2 919 59.3
Cpa.g.sc119.28 Carica papaya HOM05D004564 ORTHO05D006106 6.2e-291 1004.2 920 59.8
LjContig00049g0003012 Lotus japonicus HOM05D004564 ORTHO05D006106 2.0e-289 999.2 925 58.8
FAN14G4455 Fragaria x ananassa HOM05D004564 ORTHO05D006106 3.8e-288 995.0 929 58.8
Cc05_g01430 Coffea canephora HOM05D004564 ORTHO05D006106 1.6e-286 989.6 922 57.0
Sabra04G0053900 Salix brachista HOM05D004564 ORTHO05D006106 7.8e-286 987.3 926 57.5
Lj1g0025808 Lotus japonicus HOM05D004564 ORTHO05D006106 1.1e-284 983.4 925 58.3
PGR042G1847 Punica granatum HOM05D004564 ORTHO05D006106 1.1e-284 983.4 913 58.2
DCAR_016941 Daucus carota HOM05D004564 ORTHO05D006106 1.5e-284 983.0 915 57.0
Dinv03683 Davidia involucrata HOM05D004564 ORTHO05D006106 2.5e-284 982.2 850 61.2
COL.COLO4_38399 Corchorus olitorius HOM05D004564 ORTHO05D006106 9.6e-284 980.3 937 58.8
Migut.M00072 Erythranthe guttata HOM05D004564 ORTHO05D006106 2.1e-283 979.2 908 58.5
MSTRG.6616 Avicennia marina HOM05D004564 ORTHO05D006106 7.1e-279 964.1 922 56.1
Sopen08g021130 Solanum pennellii HOM05D004564 ORTHO05D006106 2.3e-277 959.1 908 55.7
ClCG07G010420 Citrullus lanatus HOM05D004564 ORTHO05D006106 5.6e-276 954.5 871 59.0
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 2.1e-275 952.6 920 54.7
PSO170G0418 Papaver somniferum HOM05D004564 ORTHO05D006106 2.4e-274 949.1 904 55.8
PSO782G0424 Papaver somniferum HOM05D004564 ORTHO05D006106 5.8e-273 944.5 905 55.5
FAN05G0785 Fragaria x ananassa HOM05D004564 ORTHO05D006106 2.7e-270 935.6 1082 50.2
Haze_13558 Corylus avellana HOM05D004564 ORTHO05D006106 4.6e-270 934.9 1073 50.7
Solyc08g067190.4 Solanum lycopersicum HOM05D004564 ORTHO05D006106 7.9e-270 934.1 958 53.1
Nn7g37923 Nelumbo nucifera HOM05D004564 ORTHO05D006106 2.4e-266 922.5 860 56.7
ECA247G1853 Erigeron canadensis HOM05D004564 ORTHO05D006106 2.0e-265 919.5 907 54.8
HanXRQChr10g0292821 Helianthus annuus HOM05D004564 ORTHO05D006106 9.9e-265 917.1 897 55.6
Lsat_1_v5_gn_9_29980 Lactuca sativa HOM05D004564 ORTHO05D006106 1.3e-264 916.8 919 55.1
CAN.G348.3 Capsicum annuum HOM05D004564 ORTHO05D006106 6.7e-261 904.4 872 54.9
SGA_v2.0_scaffold181G39711 Striga asiatica HOM05D004564 ORTHO05D006106 1.5e-260 903.3 989 53.2
Aqoxy1G01488 Aquilegia oxysepala HOM05D004564 ORTHO05D006106 2.9e-256 889.0 914 55.3
EL10Ac1g01740 Beta vulgaris HOM05D004564 ORTHO05D006106 5.5e-255 884.8 916 52.2
Cfa023356 Carpinus fangiana HOM05D004564 ORTHO05D006106 5.3e-250 868.2 912 53.5
Sc06g0007580 Simmondsia chinensis HOM05D004564 ORTHO05D006106 1.5e-249 866.7 914 51.5
CARHR006200 Cardamine hirsuta HOM05D004564 ORTHO05D006106 6.5e-248 861.3 590 82.4
Ciclev10030760m.g Citrus clementina HOM05D004564 ORTHO05D006106 8.5e-248 860.9 760 60.5
Nitab4.5_0000508g0020 Nicotiana tabacum HOM05D004564 ORTHO05D006106 7.9e-246 854.4 884 53.5
Rhsim12G0010800 Rhododendron simsii HOM05D004564 ORTHO05D006106 2.8e-243 845.9 906 53.0
Sed0025117 Sechium edule HOM05D004564 ORTHO05D006106 1.8e-242 843.2 760 59.1
AUR62022316 Chenopodium quinoa HOM05D004564 ORTHO05D006106 7.2e-239 831.2 916 49.8
Nitab4.5_0004346g0010 Nicotiana tabacum HOM05D004564 ORTHO05D006106 9.4e-239 830.9 872 52.1
AUR62034940 Chenopodium quinoa HOM05D004564 ORTHO05D006106 1.2e-238 830.5 854 52.1
Hund26665 Selenicereus undatus HOM05D004564 ORTHO05D006106 3.1e-234 815.8 1004 47.3
Ah.05g168440 Amaranthus hybridus HOM05D004564 ORTHO05D006106 1.9e-231 806.6 899 50.4
unitig_37.g12587 Utricularia gibba HOM05D004564 ORTHO05D006106 2.1e-222 776.5 909 48.7
Eucgr.A02026 Eucalyptus grandis HOM05D004564 ORTHO05D006106 5.7e-220 768.5 724 60.5
Atru.chr6.2044 Acer truncatum HOM05D004564 ORTHO05D006106 2.4e-218 763.1 633 67.0
Os12g0626300 Oryza sativa ssp. japonica HOM05D004564 ORTHO05D006106 1.2e-217 760.8 928 48.0
Lj1A591G26 Lonicera japonica HOM05D004564 ORTHO05D006106 2.0e-217 760.0 706 58.5
Oeu022916.1 Olea europaea HOM05D004564 ORTHO05D006106 1.2e-214 750.7 1137 41.2
Zm00001eb128180 Zea mays HOM05D004564 ORTHO05D006106 1.2e-209 734.2 914 46.7
SalBow1G3587 Salvia bowleyana HOM05D004564 ORTHO05D006106 3.4e-204 716.1 727 53.2
Peaxi162Scf00922g00319 Petunia axillaris HOM05D004564 ORTHO05D006106 1.6e-201 707.2 776 50.6
MELO3C016147.2 Cucumis melo HOM05D004564 ORTHO05D006106 2.1e-198 696.8 642 57.3
BcaNung07074 Brassica carinata HOM05D004564 ORTHO05D006106 2.0e-193 680.2 441 86.4
QL93p2016_0008 Quercus lobata HOM05D004564 ORTHO05D006106 1.9e-183 647.1 600 57.2
vmacro08736 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 9.0e-165 585.1 514 60.1
Lalb_Chr10g0106571 Lupinus albus HOM05D004564 ORTHO05D006106 2.2e-155 553.9 571 52.0
Psat2g017160 Pisum sativum HOM05D004564 ORTHO05D006106 4.0e-149 533.1 486 58.6
MBI18_g13604_MAGBIO Magnolia biondii HOM05D004564 ORTHO05D006106 4.6e-145 519.6 876 42.6
Pp3c3_33140 Physcomitrium patens HOM05D004564 ORTHO05D006106 2.8e-142 510.4 905 38.1
Psat2g017120 Pisum sativum HOM05D004564 ORTHO05D006106 1.4e-141 508.1 422 63.0
ATR0763G133 Amborella trichopoda HOM05D004564 ORTHO05D006106 2.6e-140 503.8 516 56.2
SMO174G0184 Selaginella moellendorffii HOM05D004564 ORTHO05D006106 1.0e-128 465.3 878 36.4
FAN02G2671 Fragaria x ananassa HOM05D004564 ORTHO05D006106 1.1e-122 445.3 464 54.5
AagrBONN_evm.TU.Sc2ySwM_228.5505 Anthoceros agrestis HOM05D004564 ORTHO05D006106 4.7e-121 439.9 900 34.6
Hma1.2p1_0539F.1_g174590 Hydrangea macrophylla HOM05D004564 ORTHO05D006106 1.3e-115 421.8 414 54.3
Mapoly0007s0190 Marchantia polymorpha HOM05D004564 ORTHO05D006106 8.2e-110 402.5 917 32.9
SHI30099 Sapria himalayana HOM05D004564 ORTHO05D006106 1.2e-108 398.7 601 41.4
Lalb_Chr10g0106581 Lupinus albus HOM05D004564 ORTHO05D006106 5.9e-108 396.4 294 71.4
vmacro08737 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 9.8e-95 352.4 629 37.4
arahy.Tifrunner.gnm1.ann1.UKG9X7 Arachis hypogaea HOM05D004564 ORTHO05D006106 4.1e-85 320.5 348 50.0
HPP92_001899 Vanilla planifolia HOM05D004564 ORTHO05D006106 1.5e-82 312.0 640 37.0
GSVIVG01013077001 Vitis vinifera HOM05D004564 ORTHO05D006106 6.4e-78 296.6 236 68.6
CAN.G3149.1 Capsicum annuum HOM05D004564 ORTHO05D006106 7.3e-74 283.1 228 63.6
CBR_g44342 Chara braunii HOM05D000019 ORTHO05D000353 7.3e-74 283.1 568 35.6
SEGI_14916 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 8.0e-73 279.6 277 53.4
MD17G1134700 Malus domestica HOM05D004564 ORTHO05D006106 5.1e-67 260.4 283 53.4
Glyma.02G284500 Glycine max HOM05D004564 ORTHO05D006106 1.5e-63 248.8 211 71.6
HPP92_001867 Vanilla planifolia HOM05D004564 ORTHO05D006106 4.7e-57 227.3 421 40.9
TAR626G0359 Trochodendron aralioides HOM05D004564 ORTHO05D006106 1.0e-51 209.5 151 66.2
BcaNung07000 Brassica carinata HOM05D004564 ORTHO05D006106 1.7e-51 208.8 118 92.4
MD17G1134600 Malus domestica HOM05D004564 ORTHO05D006106 4.8e-41 174.1 260 41.5
Peaxi162Scf00922g00318 Petunia axillaris HOM05D004564 ORTHO05D006106 1.9e-37 162.2 120 65.0
CDE02G3007 Ceratophyllum demersum HOM05D004564 ORTHO05D006106 2.4e-37 161.8 147 57.8
TAR626G0994 Trochodendron aralioides HOM05D004564 ORTHO05D006106 2.6e-31 141.7 98 72.4
SHI30097 Sapria himalayana HOM05D004564 ORTHO05D006106 1.1e-29 136.3 225 38.7
ATR0763G243 Amborella trichopoda HOM05D004564 ORTHO05D006106 4.3e-26 124.4 194 37.6
Rhsim02G0232100 Rhododendron simsii HOM05D000252 ORTHO05D000307 2.1e-20 105.5 148 45.3
ATR0763G128 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.3e-17 96.3 75 58.7
ATR0598G245 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.6e-17 95.9 105 49.5
arahy.Tifrunner.gnm1.ann1.RHC2N4 Arachis hypogaea HOM05D000056 ORTHO05D006106 6.3e-17 94.0 160 38.1
Rhsim12G0011200 Rhododendron simsii HOM05D004564 ORTHO05D000827 5.3e-16 90.9 100 56.0
TPR.G10922 Trifolium pratense HOM05D004564 ORTHO05D006106 1.5e-15 89.4 79 63.3
Lalb_Chr10g0106561 Lupinus albus HOM05D004564 ORTHO05D006106 4.5e-15 87.8 63 61.9
ATR0820G167 Amborella trichopoda HOM05D004564 ORTHO05D006106 3.8e-14 84.7 121 41.3
Phvul.001G172501 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 6.5e-14 84.0 131 38.2
Lj5g0002046 Lotus japonicus HOM05D004564 ORTHO05D000491 5.1e-11 74.3 179 31.8
Rhsim12G0011600 Rhododendron simsii HOM05D004564 ORTHO05D000827 1.5e-07 62.8 75 53.3
SHI30098 Sapria himalayana HOM05D004564 ORTHO05D006106 7.7e-07 60.5 232 27.6
Cre01.g034650 Chlamydomonas reinhardtii HOM05D004564 ORTHO05D006106 5.0e-06 57.8 103 35.9
Zm00001eb370760 Zea mays HOM05D004564 ORTHO05D006106 5.0e-06 57.8 142 32.4


User provided reference genes

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