Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p50660 Brassica napus HOM05D005325 ORTHO05D003507 9.5e-63 243.4 131 100.0
BolC8t52594H Brassica oleracea HOM05D005325 ORTHO05D003507 9.5e-63 243.4 131 100.0
BcaC07g42009 Brassica carinata HOM05D005325 ORTHO05D003507 2.9e-59 231.9 131 96.2
BraA09t41987Z Brassica rapa HOM05D005325 ORTHO05D003507 1.0e-56 223.4 131 93.1
Sp1g06050 Schrenkiella parvula HOM05D005325 ORTHO05D003507 2.6e-52 208.8 131 89.3
Thhalv10009101m.g Eutrema salsugineum HOM05D005325 ORTHO05D003507 4.9e-51 204.5 129 89.1
BraA10t42849Z Brassica rapa HOM05D005325 ORTHO05D003507 8.4e-51 203.8 130 86.9
BcaC07g42458 Brassica carinata HOM05D005325 ORTHO05D003507 1.3e-48 196.4 130 84.6
BolC5t29309H Brassica oleracea HOM05D005325 ORTHO05D003507 1.3e-48 196.4 130 84.6
A10p05870 Brassica napus HOM05D005325 ORTHO05D003507 5.1e-48 194.5 130 84.6
C05p05370 Brassica napus HOM05D005325 ORTHO05D003507 1.1e-47 193.4 128 83.6
AL1G17450 Arabidopsis lyrata HOM05D005325 ORTHO05D003507 1.9e-47 192.6 131 82.4
AT1G07300 Arabidopsis thaliana HOM05D005325 ORTHO05D003507 2.1e-46 189.1 129 82.2
Carub.0001s0660 Capsella rubella HOM05D005325 ORTHO05D003507 5.8e-44 181.0 132 78.8
CARHR007020 Cardamine hirsuta HOM05D005325 ORTHO05D003507 4.2e-42 174.9 129 79.1
Aa31LG5G6840 Aethionema arabicum HOM05D005325 ORTHO05D003507 2.1e-38 162.5 134 70.1
Aa31LG1G6560 Aethionema arabicum HOM05D005325 ORTHO05D003507 5.8e-36 154.5 132 69.7
Carub.0004s1074 Capsella rubella HOM05D005325 ORTHO05D003507 2.9e-35 152.1 129 66.7
A05p15750 Brassica napus HOM05D005325 ORTHO05D008457 5.4e-34 147.9 129 66.7
BraA05t20490Z Brassica rapa HOM05D005325 ORTHO05D008457 2.1e-33 146.0 129 66.7
BcaB06g28321 Brassica carinata HOM05D005325 ORTHO05D003507 3.0e-32 142.1 131 64.1
Sp4g12360 Schrenkiella parvula HOM05D005325 ORTHO05D003507 3.9e-32 141.7 127 65.4
BcaC02g11049 Brassica carinata HOM05D005325 ORTHO05D003507 5.6e-31 137.9 129 64.3
BolC4t23643H Brassica oleracea HOM05D005325 ORTHO05D008457 5.6e-31 137.9 129 64.3
A04p22570 Brassica napus HOM05D005325 ORTHO05D008457 1.3e-30 136.7 129 62.8
Thhalv10017013m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 2.8e-30 135.6 128 64.1
AT2G29640 Arabidopsis thaliana HOM05D005325 ORTHO05D008457 6.9e-29 131.0 127 63.0
AL4G24390 Arabidopsis lyrata HOM05D005325 ORTHO05D008457 1.2e-28 130.2 127 63.0
BcaC02g08075 Brassica carinata HOM05D005325 ORTHO05D008457 1.2e-28 130.2 130 61.5
C04p58710 Brassica napus HOM05D005325 ORTHO05D008457 1.2e-28 130.2 130 61.5
BraA04t17802Z Brassica rapa HOM05D005325 ORTHO05D008457 2.0e-28 129.4 131 61.8
BcaB02g10272 Brassica carinata HOM05D005325 ORTHO05D003507 4.5e-28 128.3 113 64.6
CARHR122980 Cardamine hirsuta HOM05D005325 ORTHO05D003507 2.9e-27 125.6 126 56.3
BolC4t27390H Brassica oleracea HOM05D005325 ORTHO05D008457 3.8e-27 125.2 130 60.0
Actinidia25149 Actinidia chinensis HOM05D004233 ORTHO05D003507 1.5e-15 86.7 126 44.4
Rhsim13G0071800 Rhododendron simsii HOM05D004233 ORTHO05D003507 2.5e-15 85.9 130 45.4
Ciclev10029412m.g Citrus clementina HOM05D004233 ORTHO05D003507 1.3e-14 83.6 125 45.6
Gohir.D03G117700 Gossypium hirsutum HOM05D004233 ORTHO05D003507 3.1e-13 79.0 97 53.6
Cc01_g13980 Coffea canephora HOM05D004233 ORTHO05D003507 5.3e-13 78.2 119 45.4
Duzib150G0257 Durio zibethinus HOM05D004233 ORTHO05D003507 6.9e-13 77.8 126 45.2
Gorai.003G124100 Gossypium raimondii HOM05D004233 ORTHO05D003507 6.9e-13 77.8 97 53.6
Gohir.A03G049600 Gossypium hirsutum HOM05D004233 ORTHO05D003507 2.0e-12 76.3 97 52.6
Haze_24266 Corylus avellana HOM05D004233 ORTHO05D003507 1.3e-11 73.6 92 50.0
Gohir.D05G090600 Gossypium hirsutum HOM05D004233 ORTHO05D003507 5.0e-11 71.6 128 42.2
Gorai.009G093100 Gossypium raimondii HOM05D004233 ORTHO05D003507 5.0e-11 71.6 128 42.2
QL01p037420 Quercus lobata HOM05D004233 ORTHO05D003507 6.5e-11 71.2 97 49.5
Nn2g13635 Nelumbo nucifera HOM05D004233 ORTHO05D003507 8.4e-11 70.9 120 43.3
Gohir.A05G089700 Gossypium hirsutum HOM05D004233 ORTHO05D003507 1.1e-10 70.5 128 42.2
Dinv37074 Davidia involucrata HOM05D004233 ORTHO05D003507 1.9e-10 69.7 88 52.3
Gorai.001G115000 Gossypium raimondii HOM05D004233 ORTHO05D003507 1.9e-10 69.7 127 41.7
Thecc.05G020400 Theobroma cacao HOM05D004233 ORTHO05D003507 2.5e-10 69.3 88 53.4
Nitab4.5_0000102g0150 Nicotiana tabacum HOM05D004233 ORTHO05D003507 5.5e-10 68.2 126 37.3
CiPaw.13G080500 Carya illinoinensis HOM05D004233 ORTHO05D003507 7.2e-10 67.8 113 43.4
Hma1.2p1_0227F.1_g096330 Hydrangea macrophylla HOM05D004233 ORTHO05D003507 7.2e-10 67.8 126 38.1
Potri.001G249500 Populus trichocarpa HOM05D004233 ORTHO05D003507 7.2e-10 67.8 92 52.2
TWI79G1354 Tripterygium wilfordii HOM05D004233 ORTHO05D003507 1.2e-09 67.0 96 49.0
Gohir.A07G102900 Gossypium hirsutum HOM05D004233 ORTHO05D003507 2.7e-09 65.9 127 40.2
TAR623G0525 Trochodendron aralioides HOM05D004233 ORTHO05D003507 2.7e-09 65.9 90 50.0
COL.COLO4_14571 Corchorus olitorius HOM05D004233 ORTHO05D003507 3.5e-09 65.5 88 47.7
Gohir.D07G106900 Gossypium hirsutum HOM05D004233 ORTHO05D003507 3.5e-09 65.5 127 39.4
Oeu045519.1 Olea europaea HOM05D004233 ORTHO05D003507 1.3e-08 63.5 116 42.2
Ciclev10013109m.g Citrus clementina HOM05D004233 ORTHO05D003507 2.3e-08 62.8 88 45.5
Manes.09G103100 Manihot esculenta HOM05D004233 ORTHO05D003507 3.9e-08 62.0 88 48.9
Nn1g02891 Nelumbo nucifera HOM05D004233 ORTHO05D003507 5.1e-08 61.6 110 43.6
Sabra16G0108400 Salix brachista HOM05D004233 ORTHO05D003507 5.1e-08 61.6 88 46.6
Potri.016G112700 Populus trichocarpa HOM05D004233 ORTHO05D003507 1.1e-07 60.5 101 44.6
Potri.009G043501 Populus trichocarpa HOM05D004233 ORTHO05D003507 1.5e-07 60.1 101 44.6
Hma1.2p1_0763F.1_g214800 Hydrangea macrophylla HOM05D004233 ORTHO05D003507 1.9e-07 59.7 89 48.3
Atru.chr8.2208 Acer truncatum HOM05D004233 ORTHO05D003507 2.5e-07 59.3 89 47.2
DCAR_007388 Daucus carota HOM05D004233 ORTHO05D003507 2.5e-07 59.3 93 41.9
Duzib106G0630 Durio zibethinus HOM05D004233 ORTHO05D003507 3.3e-07 58.9 88 46.6
Gohir.A09G163800 Gossypium hirsutum HOM05D004233 ORTHO05D003507 3.3e-07 58.9 88 46.6
Gohir.D09G159300 Gossypium hirsutum HOM05D004233 ORTHO05D003507 3.3e-07 58.9 88 46.6
Gorai.006G181000 Gossypium raimondii HOM05D004233 ORTHO05D003507 3.3e-07 58.9 88 46.6
Potri.006G097700 Populus trichocarpa HOM05D004233 ORTHO05D003507 3.3e-07 58.9 101 42.6
Gohir.D01G215600 Gossypium hirsutum HOM05D004233 ORTHO05D003507 7.4e-07 57.8 84 45.2
Gorai.002G261800 Gossypium raimondii HOM05D004233 ORTHO05D003507 7.4e-07 57.8 84 45.2
PGSC0003DMG400004152 Solanum tuberosum HOM05D004233 ORTHO05D003507 7.4e-07 57.8 114 35.1
Peaxi162Scf00056g00201 Petunia axillaris HOM05D004233 ORTHO05D003507 9.7e-07 57.4 134 35.8
QL07p036016 Quercus lobata HOM05D004233 ORTHO05D003507 9.7e-07 57.4 88 47.7
Lsat_1_v5_gn_9_20140 Lactuca sativa HOM05D004233 ORTHO05D003507 1.3e-06 57.0 88 48.9
MBI05_g30571_MAGBIO Magnolia biondii HOM05D004233 ORTHO05D003507 1.3e-06 57.0 85 44.7
THA.LOC104823286 Tarenaya hassleriana HOM05D004233 ORTHO05D003507 1.3e-06 57.0 95 44.2
Aqoxy4G02651 Aquilegia oxysepala HOM05D004233 ORTHO05D003507 1.6e-06 56.6 85 45.9
CiPaw.14G060900 Carya illinoinensis HOM05D004233 ORTHO05D003507 2.2e-06 56.2 98 44.9
Gohir.A01G225900 Gossypium hirsutum HOM05D004233 ORTHO05D003507 2.2e-06 56.2 84 44.0
Psat2g059280 Pisum sativum HOM05D010371 ORTHO05D003507 2.8e-06 55.8 111 36.9
CAN.G780.3 Capsicum annuum HOM05D004233 ORTHO05D003507 3.7e-06 55.5 126 34.1
Solyc06g006090.1 Solanum lycopersicum HOM05D004233 ORTHO05D003507 3.7e-06 55.5 114 36.0
Glyma.03G078400 Glycine max HOM05D004233 ORTHO05D003507 4.8e-06 55.1 109 39.4
Phvul.008G262500 Phaseolus vulgaris HOM05D010371 ORTHO05D003507 6.3e-06 54.7 96 39.6
Duzib128G0556 Durio zibethinus HOM05D004233 ORTHO05D003507 8.2e-06 54.3 84 42.9
SalBow4G0303 Salvia bowleyana HOM05D004233 ORTHO05D003507 8.2e-06 54.3 88 43.2
Sopen06g002040 Solanum pennellii HOM05D004233 ORTHO05D003507 8.2e-06 54.3 114 36.0


User provided reference genes

Program Settings