Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g41981 Brassica carinata HOM05D006284 ORTHO05D007793 8.7e-75 283.5 138 100.0
BcaC07g42491 Brassica carinata HOM05D006284 ORTHO05D007793 8.7e-75 283.5 138 100.0
C08p50410 Brassica napus HOM05D006284 ORTHO05D007793 8.7e-75 283.5 138 100.0
BolC8t52569H Brassica oleracea HOM05D006284 ORTHO05D007793 8.7e-75 283.5 138 100.0
A09p66230 Brassica napus HOM05D006284 ORTHO05D007793 8.2e-73 276.9 138 97.8
BcaC07g42490 Brassica carinata HOM05D006284 ORTHO05D007793 3.1e-72 275.0 139 98.6
BraA09t41961Z Brassica rapa HOM05D006284 ORTHO05D007793 3.1e-72 275.0 138 97.1
BcaC07g42493 Brassica carinata HOM05D006284 ORTHO05D007793 2.0e-71 272.3 138 96.4
Thhalv10009069m.g Eutrema salsugineum HOM05D006284 ORTHO05D007793 2.0e-71 272.3 138 96.4
AL1G17850 Arabidopsis lyrata HOM05D006284 ORTHO05D007793 7.7e-71 270.4 138 94.9
Carub.0001s0699 Capsella rubella HOM05D006284 ORTHO05D007793 2.9e-70 268.5 138 93.5
AT1G07645 Arabidopsis thaliana HOM05D006284 ORTHO05D007793 3.8e-70 268.1 138 94.2
Sp1g06380 Schrenkiella parvula HOM05D006284 ORTHO05D007793 5.5e-69 264.2 138 93.5
C05p05670 Brassica napus HOM05D006284 ORTHO05D007793 3.6e-68 261.5 139 92.1
BolC5t29337H Brassica oleracea HOM05D006284 ORTHO05D007793 4.6e-68 261.2 138 92.0
A06p04820 Brassica napus HOM05D006284 ORTHO05D007793 1.0e-67 260.0 139 90.6
BraA06t23686Z Brassica rapa HOM05D006284 ORTHO05D007793 1.4e-67 259.6 138 90.6
CARHR007450 Cardamine hirsuta HOM05D006284 ORTHO05D007793 1.8e-67 259.2 138 89.1
Aa31sc281G30 Aethionema arabicum HOM05D006284 ORTHO05D007793 1.7e-65 252.7 137 91.2
Atru.chr3.3846 Acer truncatum HOM05D006284 ORTHO05D007793 3.2e-61 238.4 136 85.3
Hma1.2p1_1897F.1_g306861 Hydrangea macrophylla HOM05D006284 ORTHO05D007793 4.2e-61 238.0 134 84.3
QL01p032751 Quercus lobata HOM05D006284 ORTHO05D007793 7.2e-61 237.3 136 86.0
CiPaw.13G097000 Carya illinoinensis HOM05D006284 ORTHO05D007793 7.9e-60 233.8 136 83.1
Cpa.g.sc190.6 Carica papaya HOM05D006284 ORTHO05D007793 1.5e-58 229.6 135 83.0
Dinv03613 Davidia involucrata HOM05D006284 ORTHO05D007793 2.6e-58 228.8 134 80.6
Psat7g217680 Pisum sativum HOM05D006284 ORTHO05D007793 2.6e-58 228.8 137 78.8
Rhsim01G0226200 Rhododendron simsii HOM05D006284 ORTHO05D007793 3.3e-58 228.4 136 80.9
arahy.Tifrunner.gnm1.ann1.W3SBYC Arachis hypogaea HOM05D006284 ORTHO05D007793 9.7e-58 226.9 137 81.8
FAN11G1150 Fragaria x ananassa HOM05D006284 ORTHO05D007793 1.3e-57 226.5 136 80.9
FAN21G0749 Fragaria x ananassa HOM05D006284 ORTHO05D007793 1.3e-57 226.5 136 80.9
Haze_24061 Corylus avellana HOM05D006284 ORTHO05D007793 2.2e-57 225.7 136 81.6
Medtr4g063500 Medicago truncatula HOM05D006284 ORTHO05D007793 2.2e-57 225.7 137 79.6
FAN16G2200 Fragaria x ananassa HOM05D006284 ORTHO05D007793 2.8e-57 225.3 136 80.1
PSO339G4936 Papaver somniferum HOM05D006284 ORTHO05D007793 2.8e-57 225.3 135 80.0
RcHm_v2.0_Chr5g0063801 Rosa chinensis HOM05D006284 ORTHO05D007793 4.8e-57 224.6 136 80.9
Ca_19180_v3 Cicer arietinum L. HOM05D006284 ORTHO05D007793 6.3e-57 224.2 137 77.4
Ca_31183_v3 Cicer arietinum L. HOM05D006284 ORTHO05D007793 6.3e-57 224.2 137 77.4
MSTRG.15272 Avicennia marina HOM05D006284 ORTHO05D007793 8.2e-57 223.8 138 79.7
HanXRQChr15g0493271 Helianthus annuus HOM05D006284 ORTHO05D007793 8.2e-57 223.8 137 79.6
vmacro14530 Vaccinium macrocarpon HOM05D006284 ORTHO05D007793 8.2e-57 223.8 136 79.4
Thecc.09G324900 Theobroma cacao HOM05D006284 ORTHO05D007793 1.1e-56 223.4 137 78.1
TAR623G0100 Trochodendron aralioides HOM05D006284 ORTHO05D007793 1.1e-56 223.4 136 80.1
Prupe.6G080800 Prunus persica HOM05D006284 ORTHO05D007793 1.8e-56 222.6 131 80.2
arahy.Tifrunner.gnm1.ann1.6H51DS Arachis hypogaea HOM05D006284 ORTHO05D007793 2.4e-56 222.2 137 80.3
Migut.L00518 Erythranthe guttata HOM05D006284 ORTHO05D007793 2.4e-56 222.2 137 78.8
THA.LOC104800652 Tarenaya hassleriana HOM05D006284 ORTHO05D007793 3.1e-56 221.9 136 77.9
Sed0023805 Sechium edule HOM05D006284 ORTHO05D007793 4.1e-56 221.5 136 78.7
ECA247G3393 Erigeron canadensis HOM05D006284 ORTHO05D007793 5.3e-56 221.1 137 78.8
Lj3g0026697 Lotus japonicus HOM05D006284 ORTHO05D007793 5.3e-56 221.1 138 79.0
Lalb_Chr01g0003741 Lupinus albus HOM05D006284 ORTHO05D007793 5.3e-56 221.1 136 80.1
COL.COLO4_18479 Corchorus olitorius HOM05D006284 ORTHO05D007793 9.1e-56 220.3 137 76.6
Duzib168G1259 Durio zibethinus HOM05D006284 ORTHO05D007793 1.2e-55 219.9 137 76.6
PSO384G0339 Papaver somniferum HOM05D006284 ORTHO05D007793 1.2e-55 219.9 135 78.5
Aqoxy4G02964 Aquilegia oxysepala HOM05D006284 ORTHO05D007793 1.5e-55 219.5 134 76.1
Gorai.009G100800 Gossypium raimondii HOM05D006284 ORTHO05D007793 2.0e-55 219.2 138 75.4
Lsat_1_v5_gn_5_183840 Lactuca sativa HOM05D006284 ORTHO05D007793 3.5e-55 218.4 137 78.1
SalBow5G5166 Salvia bowleyana HOM05D006284 ORTHO05D007793 3.5e-55 218.4 137 77.4
EL10Ac7g15985 Beta vulgaris HOM05D006284 ORTHO05D007793 4.5e-55 218.0 136 77.9
Gohir.A05G097100 Gossypium hirsutum HOM05D006284 ORTHO05D007793 4.5e-55 218.0 138 74.6
ClCG02G020310 Citrullus lanatus HOM05D006284 ORTHO05D007793 5.9e-55 217.6 136 77.2
Sabra16G0143200 Salix brachista HOM05D006284 ORTHO05D007793 7.7e-55 217.2 136 77.2
DCAR_015613 Daucus carota HOM05D006284 ORTHO05D007793 1.0e-54 216.9 136 75.0
Potri.001G237500 Populus trichocarpa HOM05D006284 ORTHO05D007793 2.2e-54 215.7 136 75.7
Nitab4.5_0001304g0050 Nicotiana tabacum HOM05D006284 ORTHO05D007793 2.9e-54 215.3 136 75.0
Sc06g0008270 Simmondsia chinensis HOM05D006284 ORTHO05D007793 2.9e-54 215.3 131 77.1
GSVIVG01025000001 Vitis vinifera HOM05D006284 ORTHO05D007793 2.9e-54 215.3 136 77.9
Lsat_1_v5_gn_9_22581 Lactuca sativa HOM05D006284 ORTHO05D007793 3.8e-54 214.9 132 78.0
Eucgr.B02382 Eucalyptus grandis HOM05D006284 ORTHO05D007793 5.0e-54 214.5 132 76.5
MD11G1144900 Malus domestica HOM05D006284 ORTHO05D007793 6.5e-54 214.2 127 79.5
VMungo1127G1430 Vigna mungo HOM05D006284 ORTHO05D007793 6.5e-54 214.2 137 75.9
Manes.11G132300 Manihot esculenta HOM05D006284 ORTHO05D007793 1.1e-53 213.4 136 73.5
CANSAT54G2008 Cannabis sativa HOM05D006284 ORTHO05D007793 1.5e-53 213.0 138 74.6
MELO3C013690.2 Cucumis melo HOM05D006284 ORTHO05D007793 1.5e-53 213.0 136 75.0
Actinidia33860 Actinidia chinensis HOM05D006284 ORTHO05D007793 1.9e-53 212.6 136 75.0
Nitab4.5_0001838g0030 Nicotiana tabacum HOM05D006284 ORTHO05D007793 1.9e-53 212.6 136 74.3
Sopen06g032410 Solanum pennellii HOM05D006284 ORTHO05D007793 1.9e-53 212.6 137 74.5
PGSC0003DMG400030315 Solanum tuberosum HOM05D006284 ORTHO05D007793 1.9e-53 212.6 137 75.2
Phvul.011G065500 Phaseolus vulgaris HOM05D006284 ORTHO05D007793 3.2e-53 211.8 137 75.9
Solyc06g075990.4 Solanum lycopersicum HOM05D006284 ORTHO05D007793 3.2e-53 211.8 136 74.3
Oeu041449.2 Olea europaea HOM05D006284 ORTHO05D007793 4.2e-53 211.5 136 75.0
Gohir.D05G097250 Gossypium hirsutum HOM05D006284 ORTHO05D007793 5.5e-53 211.1 134 73.1
Peaxi162Scf00679g00212 Petunia axillaris HOM05D006284 ORTHO05D007793 1.2e-52 209.9 136 74.3
CAN.G394.47 Capsicum annuum HOM05D006284 ORTHO05D007793 1.6e-52 209.5 136 74.3
Oeu056746.1 Olea europaea HOM05D006284 ORTHO05D007793 2.1e-52 209.1 136 72.8
Glyma.12G064500 Glycine max HOM05D006284 ORTHO05D007793 4.7e-52 208.0 136 75.7
AUR62001816 Chenopodium quinoa HOM05D006284 ORTHO05D007793 6.1e-52 207.6 131 76.3
AUR62009602 Chenopodium quinoa HOM05D006284 ORTHO05D007793 1.0e-51 206.8 136 74.3
Migut.L00567 Erythranthe guttata HOM05D006284 ORTHO05D007793 5.2e-51 204.5 129 77.5
PGR102G0171 Punica granatum HOM05D006284 ORTHO05D007793 1.1e-50 203.4 137 73.0
CsaV3_6G017010 Cucumis sativus L. HOM05D006284 ORTHO05D007793 2.6e-50 202.2 136 71.3
Os03g0277500 Oryza sativa ssp. japonica HOM05D006284 ORTHO05D007793 5.7e-50 201.1 130 73.8
SGA_v2.0_scaffold606G53170 Striga asiatica HOM05D006284 ORTHO05D007793 1.2e-47 193.4 131 73.3
TWI79G0071 Tripterygium wilfordii HOM05D006284 ORTHO05D007793 3.5e-47 191.8 137 73.0
SHI00991 Sapria himalayana HOM05D006284 ORTHO05D007793 1.6e-44 183.0 130 69.2
Gohir.A07G096400 Gossypium hirsutum HOM05D006284 ORTHO05D007793 1.0e-43 180.3 152 61.8
Zm00001eb012550 Zea mays HOM05D006284 ORTHO05D007793 1.5e-42 176.4 138 62.3
Ciclev10029580m.g Citrus clementina HOM05D006284 ORTHO05D007793 6.3e-41 171.0 116 73.3
Mapoly0004s0146 Marchantia polymorpha HOM05D006284 ORTHO05D007793 9.1e-40 167.2 128 64.1
Gorai.001G108700 Gossypium raimondii HOM05D006284 ORTHO05D007793 2.7e-39 165.6 132 65.2
Gohir.D07G100800 Gossypium hirsutum HOM05D006284 ORTHO05D007793 1.0e-38 163.7 158 57.6
SMO165G0091 Selaginella moellendorffii HOM05D006284 ORTHO05D007793 6.5e-38 161.0 129 56.6
Lj2A1058T40 Lonicera japonica HOM05D006284 ORTHO05D007793 1.9e-37 159.5 95 78.9
MBI14_g11686_MAGBIO Magnolia biondii HOM05D006284 ORTHO05D007793 2.5e-37 159.1 93 79.6
TPR.G10205 Trifolium pratense HOM05D006284 ORTHO05D007793 9.4e-37 157.1 101 73.3
FvH4_3g35580 Fragaria vesca HOM05D006284 ORTHO05D007793 1.4e-35 153.3 136 62.5
DCAR_018897 Daucus carota HOM05D006284 ORTHO05D007793 9.8e-34 147.1 94 72.3
Oeu033642.1 Olea europaea HOM05D006284 ORTHO05D007793 2.2e-33 146.0 101 68.3
Oeu056743.1 Olea europaea HOM05D006284 ORTHO05D007793 7.0e-32 141.0 97 68.0
CSS0000036 Camellia sinensis var. sinensis HOM05D006284 ORTHO05D007793 9.1e-32 140.6 134 55.2
Oeu056758.1 Olea europaea HOM05D006284 ORTHO05D007793 2.0e-31 139.4 97 69.1
FAN11G3292 Fragaria x ananassa HOM05D006284 ORTHO05D007793 1.5e-29 133.3 136 58.1
Oeu056739.1 Olea europaea HOM05D006284 ORTHO05D007793 4.2e-29 131.7 136 53.7
Peaxi162Scf00406g00314 Petunia axillaris HOM05D006284 ORTHO05D007793 1.9e-21 106.3 136 46.3
SEGI_15500 Sequoiadendron giganteum HOM05D006284 ORTHO05D007793 1.9e-21 106.3 90 60.0
AagrBONN_evm.TU.Sc2ySwM_344.4820 Anthoceros agrestis HOM05D006284 ORTHO05D007793 2.5e-21 105.9 95 54.7
AagrBONN_evm.TU.Sc2ySwM_117.384 Anthoceros agrestis HOM05D006284 ORTHO05D007793 7.3e-21 104.4 131 45.0
AagrBONN_evm.TU.Sc2ySwM_344.4822 Anthoceros agrestis HOM05D018382 ORTHO05D001873 2.3e-19 99.4 123 43.1
CANSAT21G1079 Cannabis sativa HOM05D002411 ORTHO05D002564 3.7e-17 92.0 60 71.7
Pp3c19_1590 Physcomitrium patens HOM05D006284 ORTHO05D007793 1.1e-16 90.5 126 39.7
FvH4_3g35610 Fragaria vesca HOM05D006284 ORTHO05D007793 1.4e-16 90.1 136 42.6
MD07G1053700 Malus domestica HOM05D006284 ORTHO05D007793 1.9e-16 89.7 54 75.9
MD14G1025700 Malus domestica HOM05D006284 ORTHO05D007793 1.2e-15 87.0 54 72.2
Cc01_g12610 Coffea canephora HOM05D006284 ORTHO05D007793 1.6e-15 86.7 49 81.6
TPR.G10968 Trifolium pratense HOM05D006284 ORTHO05D007793 1.1e-13 80.5 40 92.5
Ah.08g219180 Amaranthus hybridus HOM05D006284 ORTHO05D007793 5.8e-10 68.2 41 78.0
ATR0559G308 Amborella trichopoda HOM05D006284 ORTHO05D007793 4.9e-09 65.1 37 78.4
Cc01_g12620 Coffea canephora HOM05D006284 ORTHO05D007793 1.7e-06 56.6 30 83.3


User provided reference genes

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