Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p50100 Brassica napus HOM05D005360 ORTHO05D006501 3.3e-147 525.0 268 100.0
BolC8t52540H Brassica oleracea HOM05D005360 ORTHO05D006501 3.3e-147 525.0 268 100.0
BcaC07g42518 Brassica carinata HOM05D005360 ORTHO05D006501 2.5e-126 455.7 272 87.5
AT1G08220 Arabidopsis thaliana HOM05D005360 ORTHO05D006501 3.2e-121 438.7 275 83.6
Thhalv10008429m.g Eutrema salsugineum HOM05D005360 ORTHO05D006501 3.2e-121 438.7 279 82.4
Sp1g06870 Schrenkiella parvula HOM05D005360 ORTHO05D006501 3.2e-121 438.7 279 83.2
A08p35270 Brassica napus HOM05D005360 ORTHO05D006501 5.4e-121 438.0 275 81.5
BraA08t35436Z Brassica rapa HOM05D005360 ORTHO05D006501 3.5e-120 435.3 275 81.5
C08p03560 Brassica napus HOM05D005360 ORTHO05D006501 4.6e-120 434.9 275 81.5
AL1G18630 Arabidopsis lyrata HOM05D005360 ORTHO05D006501 7.3e-118 427.6 275 81.5
BolC8t47160H Brassica oleracea HOM05D005360 ORTHO05D006501 7.3e-118 427.6 275 81.1
Carub.0001s0758 Capsella rubella HOM05D005360 ORTHO05D006501 6.2e-117 424.5 277 79.8
CARHR008050 Cardamine hirsuta HOM05D005360 ORTHO05D006501 2.0e-115 419.5 279 79.2
BcaB03g13345 Brassica carinata HOM05D005360 ORTHO05D006501 3.6e-109 398.7 299 72.2
Aa31LG1G18020 Aethionema arabicum HOM05D005360 ORTHO05D006501 1.7e-103 379.8 238 79.0
THA.LOC104826399 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 4.2e-97 358.6 273 68.1
THA.LOC104800565 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 4.9e-90 335.1 278 63.7
HanXRQChr13g0403531 Helianthus annuus HOM05D005360 ORTHO05D006501 5.6e-86 321.6 266 60.9
GSVIVG01031434001 Vitis vinifera HOM05D005360 ORTHO05D006501 9.6e-86 320.9 240 65.4
Ciclev10029076m.g Citrus clementina HOM05D005360 ORTHO05D006501 5.3e-84 315.1 235 66.8
Thecc.09G295200 Theobroma cacao HOM05D005360 ORTHO05D006501 1.2e-83 313.9 232 66.8
Manes.11G154700 Manihot esculenta HOM05D005360 ORTHO05D006501 4.5e-83 312.0 242 63.2
Eucgr.B03910 Eucalyptus grandis HOM05D005360 ORTHO05D006501 6.4e-82 308.1 242 63.2
Haze_23502 Corylus avellana HOM05D005360 ORTHO05D006501 8.4e-82 307.8 250 62.4
MBI01_g19099_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 1.9e-81 306.6 241 63.1
SGA_v2.0_scaffold193G40720 Striga asiatica HOM05D005360 ORTHO05D006501 1.2e-80 303.9 239 62.8
CSS0014580 Camellia sinensis var. sinensis HOM05D005360 ORTHO05D006501 2.1e-80 303.1 240 62.9
TAR633G1180 Trochodendron aralioides HOM05D005360 ORTHO05D006501 2.7e-80 302.8 239 63.6
Rhsim13G0102900 Rhododendron simsii HOM05D005360 ORTHO05D006501 4.6e-80 302.0 258 61.2
Hma1.2p1_0051F.1_g029700 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 7.9e-80 301.2 264 59.5
Nitab4.5_0000442g0050 Nicotiana tabacum HOM05D005360 ORTHO05D006501 1.0e-79 300.8 233 64.4
Ca_01695_v3 Cicer arietinum L. HOM05D005360 ORTHO05D006501 3.0e-79 299.3 232 62.1
Cc04_g14880 Coffea canephora HOM05D005360 ORTHO05D006501 3.0e-79 299.3 239 62.3
MD11G1152100 Malus domestica HOM05D005360 ORTHO05D006501 3.0e-79 299.3 265 60.0
Nn6g35157 Nelumbo nucifera HOM05D005360 ORTHO05D006501 3.9e-79 298.9 267 58.4
RcHm_v2.0_Chr5g0056101 Rosa chinensis HOM05D005360 ORTHO05D006501 3.9e-79 298.9 265 60.8
Atru.chr3.3432 Acer truncatum HOM05D005360 ORTHO05D006501 5.1e-79 298.5 265 60.0
CiPaw.14G105400 Carya illinoinensis HOM05D005360 ORTHO05D006501 8.7e-79 297.7 265 59.2
Dinv29396 Davidia involucrata HOM05D005360 ORTHO05D006501 1.1e-78 297.4 268 57.8
TWI31G0773 Tripterygium wilfordii HOM05D005360 ORTHO05D006501 1.1e-78 297.4 273 57.5
FvH4_3g30230 Fragaria vesca HOM05D005360 ORTHO05D006501 1.5e-78 297.0 271 57.6
vmacro03239 Vaccinium macrocarpon HOM05D005360 ORTHO05D006501 3.3e-78 295.8 241 62.2
Aqoxy1G01027 Aquilegia oxysepala HOM05D005360 ORTHO05D006501 4.3e-78 295.4 236 60.6
QL01p014311 Quercus lobata HOM05D005360 ORTHO05D006501 5.6e-78 295.0 270 56.3
Hund07728 Selenicereus undatus HOM05D005360 ORTHO05D006501 7.4e-78 294.7 233 60.5
Sopen11g026340 Solanum pennellii HOM05D005360 ORTHO05D006501 7.4e-78 294.7 271 57.2
PGSC0003DMG400000427 Solanum tuberosum HOM05D005360 ORTHO05D006501 9.6e-78 294.3 271 57.2
TPR.G32397 Trifolium pratense HOM05D005360 ORTHO05D006501 1.3e-77 293.9 253 58.1
Ah.01g016120 Amaranthus hybridus HOM05D005360 ORTHO05D006501 2.8e-77 292.7 262 57.6
DCAR_015495 Daucus carota HOM05D005360 ORTHO05D006501 2.8e-77 292.7 266 57.1
MD03G1130500 Malus domestica HOM05D005360 ORTHO05D006501 2.8e-77 292.7 270 60.0
CAN.G546.64 Capsicum annuum HOM05D005360 ORTHO05D006501 3.7e-77 292.4 253 58.9
Solyc11g066610.2 Solanum lycopersicum HOM05D005360 ORTHO05D006501 3.7e-77 292.4 271 57.9
MSTRG.21078 Avicennia marina HOM05D005360 ORTHO05D006501 4.8e-77 292.0 232 61.2
Migut.D02306 Erythranthe guttata HOM05D005360 ORTHO05D006501 4.8e-77 292.0 240 59.2
Glyma.13G219600 Glycine max HOM05D005360 ORTHO05D006501 6.2e-77 291.6 254 58.3
Lj3g0014716 Lotus japonicus HOM05D005360 ORTHO05D006501 8.1e-77 291.2 260 58.5
ATR0665G582 Amborella trichopoda HOM05D005360 ORTHO05D006501 1.1e-76 290.8 248 59.3
Lj1A216T24 Lonicera japonica HOM05D005360 ORTHO05D006501 3.1e-76 289.3 270 55.6
CDE09G0858 Ceratophyllum demersum HOM05D005360 ORTHO05D006501 6.9e-76 288.1 265 55.1
Phvul.006G166300 Phaseolus vulgaris HOM05D005360 ORTHO05D006501 1.5e-75 287.0 233 60.9
MBI01_g31369_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 2.0e-75 286.6 241 61.0
Medtr2g084545 Medicago truncatula HOM05D005360 ORTHO05D006501 2.0e-75 286.6 225 61.8
EL10Ac9g21036 Beta vulgaris HOM05D005360 ORTHO05D006501 4.5e-75 285.4 257 57.2
Potri.009G002000 Populus trichocarpa HOM05D005360 ORTHO05D006501 7.6e-75 284.6 270 56.7
Sabra09G0000500 Salix brachista HOM05D005360 ORTHO05D006501 1.3e-74 283.9 230 61.3
Lsat_1_v5_gn_6_42160 Lactuca sativa HOM05D005360 ORTHO05D006501 2.2e-74 283.1 268 57.8
Actinidia24162 Actinidia chinensis HOM05D005360 ORTHO05D006501 4.9e-74 282.0 252 58.3
CANSAT64G2904 Cannabis sativa HOM05D005360 ORTHO05D006501 1.1e-73 280.8 236 59.3
Lalb_Chr24g0395031 Lupinus albus HOM05D005360 ORTHO05D006501 1.1e-73 280.8 259 55.6
CANSAT64G2995 Cannabis sativa HOM05D005360 ORTHO05D006501 4.2e-73 278.9 236 58.9
Psat5g252440 Pisum sativum HOM05D005360 ORTHO05D006501 4.2e-73 278.9 239 57.7
Gohir.D07G110200 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.6e-72 276.9 264 54.9
Gorai.001G118400 Gossypium raimondii HOM05D005360 ORTHO05D006501 1.6e-72 276.9 264 54.9
PSO339G5504 Papaver somniferum HOM05D005360 ORTHO05D006501 2.7e-72 276.2 237 57.8
PSO063G2369 Papaver somniferum HOM05D005360 ORTHO05D006501 1.0e-71 274.2 237 57.4
Sc21g0004290 Simmondsia chinensis HOM05D005360 ORTHO05D006501 1.3e-71 273.9 254 56.3
FAN11G3336 Fragaria x ananassa HOM05D005360 ORTHO05D006501 7.4e-70 268.1 271 53.9
PGR102G1574 Punica granatum HOM05D005360 ORTHO05D006501 2.1e-69 266.5 254 55.9
FAN21G0874 Fragaria x ananassa HOM05D005360 ORTHO05D006501 3.7e-69 265.8 271 53.5
Peaxi162Scf00150g00315 Petunia axillaris HOM05D005360 ORTHO05D006501 3.4e-67 259.2 224 59.4
Sed0004275 Sechium edule HOM05D005360 ORTHO05D006501 7.6e-67 258.1 206 63.6
Gohir.A07G106300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.9e-66 256.1 205 61.5
AUR62031793 Chenopodium quinoa HOM05D005360 ORTHO05D006501 1.9e-65 253.4 232 56.5
HPP92_015033 Vanilla planifolia HOM05D005360 ORTHO05D006501 5.1e-63 245.4 231 54.5
COL.COLO4_19249 Corchorus olitorius HOM05D000737 ORTHO05D000581 6.7e-63 245.0 185 65.9
arahy.Tifrunner.gnm1.ann1.9X9VA5 Arachis hypogaea HOM05D005360 ORTHO05D006501 2.5e-62 243.0 261 51.3
CsaV3_6G014530 Cucumis sativus L. HOM05D005360 ORTHO05D006501 2.2e-61 240.0 198 61.6
Zm00001eb345720 Zea mays HOM05D005360 ORTHO05D006501 4.8e-61 238.8 249 50.6
Duzib168G1167 Durio zibethinus HOM05D005360 ORTHO05D006501 6.3e-61 238.4 186 62.4
unitig_899.g14961 Utricularia gibba HOM05D005360 ORTHO05D006501 1.1e-60 237.7 245 50.2
MELO3C021472.2 Cucumis melo HOM05D005360 ORTHO05D006501 1.4e-60 237.3 198 61.6
SHI06160 Sapria himalayana HOM05D005360 ORTHO05D006501 1.8e-60 236.9 218 55.0
Os05g0176500 Oryza sativa ssp. japonica HOM05D005360 ORTHO05D006501 6.5e-58 228.4 285 43.9
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 1.1e-57 227.6 227 52.9
SalBow6G0303 Salvia bowleyana HOM05D005360 ORTHO05D006501 1.4e-57 227.3 259 47.5
TAR633G1639 Trochodendron aralioides HOM05D005360 ORTHO05D006501 1.4e-57 227.3 214 55.6
HPP92_015112 Vanilla planifolia HOM05D005360 ORTHO05D006501 5.5e-57 225.3 236 50.8
Gohir.A07G000166 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.8e-55 220.3 185 58.9
Gohir.1Z049633 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.8e-53 213.0 180 58.9
Prupe.6G115300 Prunus persica HOM05D005360 ORTHO05D006501 5.1e-47 192.2 159 62.3
Gohir.A05G054800 Gossypium hirsutum HOM05D005360 ORTHO05D006501 5.0e-42 175.6 229 46.3
VMungo0540G0253 Vigna mungo HOM05D005360 ORTHO05D006501 1.2e-40 171.0 146 60.3
Oeu026987.1 Olea europaea HOM05D005360 ORTHO05D006501 4.7e-40 169.1 122 65.6
Gohir.A02G097303 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.8e-39 167.2 184 50.5
Hma1.2p1_0051F.1_g029710 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 3.9e-39 166.0 124 64.5
SMO116G0134 Selaginella moellendorffii HOM05D005360 ORTHO05D006501 6.7e-39 165.2 220 38.6
Cpa.g.sc2403.1 Carica papaya HOM05D005360 ORTHO05D006501 1.2e-30 137.9 147 52.4
Gohir.A10G063101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.8e-29 132.5 169 44.4
BcaC07g37801 Brassica carinata HOM05D005360 ORTHO05D006501 4.5e-27 125.9 98 70.4
CiPaw.13G142900 Carya illinoinensis HOM05D005360 ORTHO05D006501 1.9e-25 120.6 124 47.6
Gohir.A11G191650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 5.5e-25 119.0 202 39.6
CiPaw.13G143100 Carya illinoinensis HOM05D005360 ORTHO05D006501 2.1e-24 117.1 115 49.6
Gohir.A09G043650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.6e-24 116.3 117 52.1
FAN09G1017 Fragaria x ananassa HOM05D005360 ORTHO05D006501 8.0e-24 115.2 110 52.7
FAN09G0332 Fragaria x ananassa HOM05D005360 ORTHO05D006501 6.3e-21 105.5 74 66.2
Gohir.A06G034300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.1e-20 104.8 155 41.3
AUR62023988 Chenopodium quinoa HOM05D005360 ORTHO05D006501 2.9e-18 96.7 83 56.6
Gohir.A05G334300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.3e-17 93.2 123 45.5
Gohir.A06G100002 Gossypium hirsutum HOM05D005360 ORTHO05D006501 5.5e-17 92.4 70 60.0
Gohir.A06G038884 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.4e-15 87.8 136 42.6
Zm00001eb137350 Zea mays HOM05D005360 ORTHO05D006501 4.0e-15 86.3 81 46.9
FAN04G1623 Fragaria x ananassa HOM05D005360 ORTHO05D006501 2.0e-14 84.0 66 60.6
SEGI_40723 Sequoiadendron giganteum HOM05D005360 ORTHO05D006501 3.4e-14 83.2 108 41.7
Gohir.A06G133300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 7.0e-12 75.5 99 42.4
Gohir.1Z049508 Gossypium hirsutum HOM05D005360 ORTHO05D006501 7.8e-11 72.0 87 43.7
Gohir.A11G000150 Gossypium hirsutum HOM05D005360 ORTHO05D026494 6.6e-10 68.9 101 43.6
Eucgr.L03607 Eucalyptus grandis HOM05D005360 ORTHO05D006501 2.5e-09 67.0 53 52.8
FvH4_1g23850 Fragaria vesca HOM05D005360 ORTHO05D006501 1.8e-07 60.8 47 61.7
Gohir.A02G089101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 8.9e-07 58.5 79 43.0
ECA240G4443 Erigeron canadensis HOM05D000331 ORTHO05D006501 1.2e-06 58.2 70 47.1
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 3.4e-06 56.6 51 52.9
Zm00001eb350410 Zea mays HOM05D005360 ORTHO05D006501 4.4e-06 56.2 48 43.8
Zm00001eb410990 Zea mays HOM05D005360 ORTHO05D006501 4.4e-06 56.2 48 43.8
Zm00001eb228200 Zea mays HOM05D005360 ORTHO05D006501 5.8e-06 55.8 53 43.4
Zm00001eb229280 Zea mays HOM05D005360 ORTHO05D006501 5.8e-06 55.8 53 43.4


User provided reference genes

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