Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g41946 Brassica carinata HOM05D005659 ORTHO05D007059 7.3e-80 300.4 146 100.0
C08p50030 Brassica napus HOM05D005659 ORTHO05D007059 7.3e-80 300.4 146 100.0
BolC8t52533H Brassica oleracea HOM05D005659 ORTHO05D007059 8.1e-79 297.0 146 98.6
A09p65930 Brassica napus HOM05D005659 ORTHO05D007059 5.2e-78 294.3 146 97.9
BraA09t41937Z Brassica rapa HOM05D005659 ORTHO05D007059 5.2e-78 294.3 146 97.9
BcaC07g42532 Brassica carinata HOM05D005659 ORTHO05D007059 1.1e-75 286.6 146 93.8
BcaB07g34086 Brassica carinata HOM05D005659 ORTHO05D007059 4.1e-75 284.6 146 92.5
C05p06520 Brassica napus HOM05D005659 ORTHO05D007059 4.1e-75 284.6 146 92.5
BolC5t29412H Brassica oleracea HOM05D005659 ORTHO05D007059 4.1e-75 284.6 146 92.5
Sp1g07030 Schrenkiella parvula HOM05D005659 ORTHO05D007059 1.6e-74 282.7 146 91.1
A06p05400 Brassica napus HOM05D005659 ORTHO05D007059 3.9e-73 278.1 146 91.8
BraA06t23749Z Brassica rapa HOM05D005659 ORTHO05D007059 3.9e-73 278.1 146 91.8
BcaB03g13338 Brassica carinata HOM05D005659 ORTHO05D007059 5.1e-73 277.7 146 90.4
Aa31sc785G10 Aethionema arabicum HOM05D005659 ORTHO05D007059 1.8e-70 269.2 143 88.1
Carub.0001s0773 Capsella rubella HOM05D005659 ORTHO05D007059 4.4e-69 264.6 143 88.1
CARHR008270 Cardamine hirsuta HOM05D005659 ORTHO05D007059 5.8e-69 264.2 146 86.3
AT1G08380 Arabidopsis thaliana HOM05D005659 ORTHO05D007059 9.9e-69 263.5 143 87.4
A08p35240 Brassica napus HOM05D005659 ORTHO05D007059 1.1e-67 260.0 135 90.4
THA.LOC104826438 Tarenaya hassleriana HOM05D005659 ORTHO05D007059 3.9e-65 251.5 144 81.9
BraA08t35432Z Brassica rapa HOM05D005659 ORTHO05D007059 5.6e-64 247.7 135 88.1
Ciclev10029515m.g Citrus clementina HOM05D005659 ORTHO05D007059 1.2e-61 240.0 145 77.2
Cpa.g.sc195.32 Carica papaya HOM05D005659 ORTHO05D007059 3.4e-61 238.4 149 74.5
Gohir.D05G082100 Gossypium hirsutum HOM05D005659 ORTHO05D007059 5.8e-61 237.7 148 75.7
Gorai.009G083700 Gossypium raimondii HOM05D005659 ORTHO05D007059 2.2e-60 235.7 148 75.0
Gohir.A05G079200 Gossypium hirsutum HOM05D005659 ORTHO05D007059 2.9e-60 235.3 147 75.5
Cfa009983 Carpinus fangiana HOM05D005659 ORTHO05D007059 4.9e-60 234.6 149 73.8
Sabra04G0134500 Salix brachista HOM05D005659 ORTHO05D007059 6.4e-60 234.2 152 74.3
Thecc.09G277800 Theobroma cacao HOM05D005659 ORTHO05D007059 8.4e-60 233.8 145 74.5
CANSAT54G0546 Cannabis sativa HOM05D005659 ORTHO05D007059 1.1e-59 233.4 145 76.6
Atru.chr3.3161 Acer truncatum HOM05D005659 ORTHO05D007059 1.9e-59 232.6 143 72.7
Sed0025059 Sechium edule HOM05D005659 ORTHO05D007059 2.4e-59 232.3 147 76.9
Potri.004G199400 Populus trichocarpa HOM05D005659 ORTHO05D007059 3.2e-59 231.9 152 71.7
AL1G18790 Arabidopsis lyrata HOM05D005659 ORTHO05D007059 5.4e-59 231.1 114 90.4
CAN.G919.41 Capsicum annuum HOM05D005659 ORTHO05D007059 5.4e-59 231.1 148 75.0
Haze_23342 Corylus avellana HOM05D005659 ORTHO05D007059 9.3e-59 230.3 149 73.2
MD11G1169900 Malus domestica HOM05D005659 ORTHO05D007059 9.3e-59 230.3 146 77.4
CiPaw.14G097600 Carya illinoinensis HOM05D005659 ORTHO05D007059 1.2e-58 229.9 150 75.3
CsaV3_1G015100 Cucumis sativus L. HOM05D005659 ORTHO05D007059 1.6e-58 229.6 148 75.0
Nitab4.5_0006903g0010 Nicotiana tabacum HOM05D005659 ORTHO05D007059 1.6e-58 229.6 143 74.1
HanXRQChr04g0128561 Helianthus annuus HOM05D005659 ORTHO05D007059 2.7e-58 228.8 140 76.4
Sabra09G0125800 Salix brachista HOM05D005659 ORTHO05D007059 2.7e-58 228.8 149 73.8
Gohir.D07G115000 Gossypium hirsutum HOM05D005659 ORTHO05D007059 3.5e-58 228.4 145 75.2
Gorai.001G123200 Gossypium raimondii HOM05D005659 ORTHO05D007059 6.0e-58 227.6 145 74.5
MD03G1150500 Malus domestica HOM05D005659 ORTHO05D007059 7.9e-58 227.3 146 76.0
Prupe.6G137400 Prunus persica HOM05D005659 ORTHO05D007059 7.9e-58 227.3 144 78.5
TWI75G1160 Tripterygium wilfordii HOM05D005659 ORTHO05D007059 7.9e-58 227.3 150 74.0
Manes.04G000900 Manihot esculenta HOM05D005659 ORTHO05D007059 1.0e-57 226.9 151 73.5
PGR102G0055 Punica granatum HOM05D005659 ORTHO05D007059 1.0e-57 226.9 144 73.6
DCAR_012226 Daucus carota HOM05D005659 ORTHO05D007059 1.8e-57 226.1 144 74.3
Oeu002356.1 Olea europaea HOM05D005659 ORTHO05D007059 1.8e-57 226.1 149 73.8
Solyc06g074200.4 Solanum lycopersicum HOM05D005659 ORTHO05D007059 1.8e-57 226.1 149 73.2
Sopen06g030620 Solanum pennellii HOM05D005659 ORTHO05D007059 1.8e-57 226.1 149 73.2
Peaxi162Scf00091g00713 Petunia axillaris HOM05D005659 ORTHO05D007059 2.3e-57 225.7 149 73.2
Sc12g0004680 Simmondsia chinensis HOM05D005659 ORTHO05D007059 3.0e-57 225.3 147 72.1
PGSC0003DMG400005890 Solanum tuberosum HOM05D005659 ORTHO05D007059 5.1e-57 224.6 149 72.5
Potri.009G160800 Populus trichocarpa HOM05D005659 ORTHO05D007059 1.1e-56 223.4 149 71.1
ECA236G2734 Erigeron canadensis HOM05D005659 ORTHO05D007059 3.3e-56 221.9 141 75.9
SalBow6G0820 Salvia bowleyana HOM05D005659 ORTHO05D007059 7.4e-56 220.7 142 72.5
Eucgr.B03824 Eucalyptus grandis HOM05D005659 ORTHO05D007059 2.1e-55 219.2 143 71.3
Cc01_g08780 Coffea canephora HOM05D005659 ORTHO05D007059 2.8e-55 218.8 152 69.7
EL10Ac4g08175 Beta vulgaris HOM05D005659 ORTHO05D007059 4.8e-55 218.0 145 71.0
C08p03620 Brassica napus HOM05D005659 ORTHO05D007059 4.8e-55 218.0 117 86.3
Hma1.2p1_2164F.1_g315750 Hydrangea macrophylla HOM05D005659 ORTHO05D007059 8.1e-55 217.2 148 69.6
GSVIVG01036077001 Vitis vinifera HOM05D005659 ORTHO05D007059 8.1e-55 217.2 148 68.9
Glyma.12G092000 Glycine max HOM05D005659 ORTHO05D007059 4.0e-54 214.9 144 72.2
MSTRG.18774 Avicennia marina HOM05D005659 ORTHO05D007059 5.3e-54 214.5 135 72.6
MELO3C025587.2 Cucumis melo HOM05D005659 ORTHO05D007059 6.9e-54 214.2 118 82.2
CSS0022105 Camellia sinensis var. sinensis HOM05D005659 ORTHO05D007059 1.2e-53 213.4 150 69.3
PSO339G3866 Papaver somniferum HOM05D005659 ORTHO05D007059 1.2e-53 213.4 147 69.4
Aqoxy4G02709 Aquilegia oxysepala HOM05D005659 ORTHO05D007059 2.0e-53 212.6 151 68.9
CSS0045008 Camellia sinensis var. sinensis HOM05D005659 ORTHO05D007059 2.6e-53 212.2 144 71.5
Lj3g0027363 Lotus japonicus HOM05D005659 ORTHO05D007059 2.6e-53 212.2 145 70.3
PSO384G5049 Papaver somniferum HOM05D005659 ORTHO05D007059 2.6e-53 212.2 147 69.4
Duzib170G0332 Durio zibethinus HOM05D005659 ORTHO05D007059 3.4e-53 211.8 146 69.9
arahy.Tifrunner.gnm1.ann1.QDSR7W Arachis hypogaea HOM05D005659 ORTHO05D007059 5.8e-53 211.1 145 70.3
Ca_26075_v3 Cicer arietinum L. HOM05D005659 ORTHO05D007059 5.8e-53 211.1 145 71.0
Phvul.011G096400 Phaseolus vulgaris HOM05D005659 ORTHO05D007059 5.8e-53 211.1 137 72.3
MBI17_g28186_MAGBIO Magnolia biondii HOM05D005659 ORTHO05D007059 9.9e-53 210.3 138 71.7
arahy.Tifrunner.gnm1.ann1.MVQ7LV Arachis hypogaea HOM05D005659 ORTHO05D007059 1.7e-52 209.5 145 70.3
VMungo1127G0741 Vigna mungo HOM05D005659 ORTHO05D007059 1.7e-52 209.5 137 72.3
Dinv22811 Davidia involucrata HOM05D005659 ORTHO05D007059 2.9e-52 208.8 115 81.7
FAN11G1786 Fragaria x ananassa HOM05D005659 ORTHO05D007059 2.9e-52 208.8 145 71.7
Glyma.11G181100 Glycine max HOM05D005659 ORTHO05D007059 2.9e-52 208.8 144 71.5
Psat7g186640 Pisum sativum HOM05D005659 ORTHO05D007059 2.9e-52 208.8 145 71.7
RcHm_v2.0_Chr5g0046981 Rosa chinensis HOM05D005659 ORTHO05D007059 2.9e-52 208.8 146 72.6
unitig_0.g1472 Utricularia gibba HOM05D005659 ORTHO05D007059 6.4e-52 207.6 118 78.8
CDE08G1285 Ceratophyllum demersum HOM05D005659 ORTHO05D007059 8.4e-52 207.2 146 68.5
Medtr4g052420 Medicago truncatula HOM05D005659 ORTHO05D007059 8.4e-52 207.2 149 71.8
FAN21G2850 Fragaria x ananassa HOM05D005659 ORTHO05D007059 1.4e-51 206.5 145 71.0
vmacro14338 Vaccinium macrocarpon HOM05D005659 ORTHO05D007059 1.4e-51 206.5 145 69.7
FvH4_3g25770 Fragaria vesca HOM05D005659 ORTHO05D007059 2.4e-51 205.7 145 71.0
FAN25G1572 Fragaria x ananassa HOM05D005659 ORTHO05D007059 2.4e-51 205.7 145 71.0
CDE02G1582 Ceratophyllum demersum HOM05D005659 ORTHO05D007059 3.2e-51 205.3 145 68.3
SGA_v2.0_scaffold7G03995 Striga asiatica HOM05D005659 ORTHO05D007059 5.5e-51 204.5 143 67.8
TPR.G17220 Trifolium pratense HOM05D005659 ORTHO05D007059 9.3e-51 203.8 146 70.5
FAN16G1033 Fragaria x ananassa HOM05D005659 ORTHO05D007059 1.2e-50 203.4 145 69.7
Lalb_Chr03g0028281 Lupinus albus HOM05D005659 ORTHO05D007059 1.6e-50 203.0 145 69.0
Migut.D02409 Erythranthe guttata HOM05D005659 ORTHO05D007059 4.6e-50 201.4 113 77.9
EL10Ac4g08170 Beta vulgaris HOM05D005659 ORTHO05D007059 1.8e-49 199.5 114 78.1
Lsat_1_v5_gn_7_85921 Lactuca sativa HOM05D005659 ORTHO05D007059 6.7e-49 197.6 143 69.2
Actinidia37070 Actinidia chinensis HOM05D005659 ORTHO05D007059 1.1e-46 190.3 138 66.7
ATR0579G079 Amborella trichopoda HOM05D005659 ORTHO05D007059 5.8e-45 184.5 144 65.3
HPP92_009876 Vanilla planifolia HOM05D005659 ORTHO05D007059 1.0e-44 183.7 144 64.6
Zm00001eb083680 Zea mays HOM05D005659 ORTHO05D007059 4.9e-44 181.4 99 80.8
Actinidia35474 Actinidia chinensis HOM05D005659 ORTHO05D007059 1.4e-43 179.9 138 63.8
BcaB03g13340 Brassica carinata HOM05D005659 ORTHO05D007059 3.2e-43 178.7 120 73.3
Os04g0414700 Oryza sativa ssp. japonica HOM05D005659 ORTHO05D007059 3.2e-43 178.7 142 62.7
ClCG01G011760 Citrullus lanatus HOM05D005659 ORTHO05D007059 4.2e-43 178.3 89 88.8
Mapoly0064s0077 Marchantia polymorpha HOM05D005659 ORTHO05D007059 4.2e-43 178.3 146 61.0
Nitab4.5_0000937g0110 Nicotiana tabacum HOM05D005659 ORTHO05D007059 1.3e-41 173.3 87 87.4
Thhalv10009047m.g Eutrema salsugineum HOM05D005659 ORTHO05D007059 1.1e-40 170.2 146 63.0
SEGI_08129 Sequoiadendron giganteum HOM05D005659 ORTHO05D007059 1.9e-40 169.5 140 62.1
Pp3c15_16690 Physcomitrium patens HOM05D005659 ORTHO05D007059 4.3e-40 168.3 148 56.8
Pp3c15_16700 Physcomitrium patens HOM05D005659 ORTHO05D007059 7.4e-40 167.5 145 57.2
TAR633G2174 Trochodendron aralioides HOM05D005659 ORTHO05D007059 3.4e-37 158.7 119 68.1
QL01p011787 Quercus lobata HOM05D005659 ORTHO05D007059 1.3e-36 156.8 114 71.1
SMO163G0051 Selaginella moellendorffii HOM05D005659 ORTHO05D007059 2.9e-36 155.6 89 77.5
AUR62001528 Chenopodium quinoa HOM05D005659 ORTHO05D007059 5.0e-36 154.8 114 66.7
Nn2g14238 Nelumbo nucifera HOM05D005659 ORTHO05D007059 1.9e-35 152.9 120 63.3
Rhsim01G0203000 Rhododendron simsii HOM05D005659 ORTHO05D007059 8.8e-33 144.1 105 68.6
ATR0772G031 Amborella trichopoda HOM05D005659 ORTHO05D007059 1.8e-30 136.3 118 61.9
Nitab4.5_0005472g0080 Nicotiana tabacum HOM05D005659 ORTHO05D007059 3.1e-30 135.6 113 63.7
unitig_88.g27645 Utricularia gibba HOM05D005659 ORTHO05D007059 3.1e-30 135.6 88 71.6
Hund18778 Selenicereus undatus HOM05D005659 ORTHO05D007059 1.0e-28 130.6 115 58.3
Ah.08g223250 Amaranthus hybridus HOM05D005659 ORTHO05D007059 1.2e-26 123.6 113 59.3
TAR623G1200 Trochodendron aralioides HOM05D005659 ORTHO05D007059 9.7e-24 114.0 90 63.3
Cre07.g334550 Chlamydomonas reinhardtii HOM05D005659 ORTHO05D007059 2.6e-21 105.9 124 41.9
Manes.11G164551 Manihot esculenta HOM05D005659 ORTHO05D007059 1.3e-20 103.6 89 55.1
MCO01G581 Micromonas commoda HOM05D005659 ORTHO05D007059 8.0e-18 94.4 110 44.5
Gohir.A07G111250 Gossypium hirsutum HOM05D005659 ORTHO05D007059 5.3e-14 81.6 69 59.4
Nitab4.5_0003068g0060 Nicotiana tabacum HOM05D005659 ORTHO05D007059 2.0e-13 79.7 81 53.1
Peaxi162Scf00345g01024 Petunia axillaris HOM05D005659 ORTHO05D007059 3.5e-13 79.0 157 35.0
MD11G1234000 Malus domestica HOM05D005659 ORTHO05D007059 9.4e-11 70.9 73 54.8
MD17G1209900 Malus domestica HOM05D005659 ORTHO05D007059 2.1e-10 69.7 73 53.4


User provided reference genes

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