Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p49560 Brassica napus HOM05D004904 ORTHO05D015396 2.1e-88 328.9 159 100.0
BolC8t52492H Brassica oleracea HOM05D004904 ORTHO05D015396 2.1e-88 328.9 159 100.0
BcaC07g41901 Brassica carinata HOM05D004904 ORTHO05D015396 9.1e-84 313.5 151 99.3
BcaC07g41902 Brassica carinata HOM05D004904 ORTHO05D015396 9.1e-84 313.5 151 99.3
BraA09t41901Z Brassica rapa HOM05D004904 ORTHO05D015396 3.6e-80 301.6 161 94.4
C08p49610 Brassica napus HOM05D004904 ORTHO05D015396 1.0e-50 203.8 101 93.1
A09p65560 Brassica napus HOM05D004904 ORTHO05D015396 2.8e-48 195.7 101 90.1
AT1G09245 Arabidopsis thaliana HOM05D004904 ORTHO05D015396 2.9e-21 105.9 149 41.6
Carub.0002s0376 Capsella rubella HOM05D004904 ORTHO05D015396 4.9e-21 105.1 149 37.6
Thhalv10015293m.g Eutrema salsugineum HOM05D004904 ORTHO05D015396 6.4e-21 104.8 145 39.3
CARHR102040 Cardamine hirsuta HOM05D004904 ORTHO05D012610 7.8e-19 97.8 148 40.5
BolC2t12283H Brassica oleracea HOM05D004904 ORTHO05D010762 1.5e-17 93.6 145 36.6
A02p42370 Brassica napus HOM05D004904 ORTHO05D010762 5.6e-17 91.7 145 35.9
BraA02t09168Z Brassica rapa HOM05D004904 ORTHO05D010762 5.6e-17 91.7 145 35.9
Thhalv10005414m.g Eutrema salsugineum HOM05D004904 ORTHO05D010762 7.3e-17 91.3 146 41.8
CARHR216070 Cardamine hirsuta HOM05D004904 ORTHO05D010762 1.3e-16 90.5 146 41.1
Thhalv10002725m.g Eutrema salsugineum HOM05D004904 ORTHO05D010762 1.6e-16 90.1 150 36.0
Thhalv10009624m.g Eutrema salsugineum HOM05D004904 ORTHO05D010762 2.1e-16 89.7 146 40.4
A09p07710 Brassica napus HOM05D004904 ORTHO05D010762 2.8e-16 89.4 121 39.7
CARHR102030 Cardamine hirsuta HOM05D004904 ORTHO05D012610 3.6e-16 89.0 148 37.8
Carub.0007s2596 Capsella rubella HOM05D004904 ORTHO05D015396 6.2e-16 88.2 138 38.4
CARHR057800 Cardamine hirsuta HOM05D004904 ORTHO05D010762 8.1e-16 87.8 145 37.9
C09p08630 Brassica napus HOM05D004904 ORTHO05D010762 1.1e-15 87.4 119 40.3
BolC9t53774H Brassica oleracea HOM05D004904 ORTHO05D010762 1.1e-15 87.4 119 40.3
BcaC04g23408 Brassica carinata HOM05D004904 ORTHO05D010762 2.4e-15 86.3 148 36.5
CARHR216110 Cardamine hirsuta HOM05D004904 ORTHO05D010762 2.4e-15 86.3 148 37.8
A09p07760 Brassica napus HOM05D004904 ORTHO05D010762 4.0e-15 85.5 115 42.6
BraA09t36424Z Brassica rapa HOM05D004904 ORTHO05D010762 4.0e-15 85.5 115 42.6
BraA09t36421Z Brassica rapa HOM05D004904 ORTHO05D010762 5.3e-15 85.1 148 35.8
CARHR216060 Cardamine hirsuta HOM05D004904 ORTHO05D010762 5.3e-15 85.1 145 35.9
BcaNung01392 Brassica carinata HOM05D004904 ORTHO05D010762 9.0e-15 84.3 114 41.2
BolC9t53777H Brassica oleracea HOM05D004904 ORTHO05D010762 1.5e-14 83.6 115 40.9
A09p07740 Brassica napus HOM05D004904 ORTHO05D010762 2.0e-14 83.2 148 35.1
BcaC04g23406 Brassica carinata HOM05D004904 ORTHO05D010762 2.6e-14 82.8 115 40.9
A10p15680 Brassica napus HOM05D004904 ORTHO05D010762 2.6e-14 82.8 115 41.7
BraA10t43666Z Brassica rapa HOM05D004904 ORTHO05D010762 2.6e-14 82.8 115 41.7
Carub.0007s3223 Capsella rubella HOM05D004904 ORTHO05D010762 3.4e-14 82.4 119 40.3
C09p50630 Brassica napus HOM05D004904 ORTHO05D010762 7.6e-14 81.3 117 39.3
BolC9t57916H Brassica oleracea HOM05D004904 ORTHO05D010762 7.6e-14 81.3 117 39.3
Thhalv10005700m.g Eutrema salsugineum HOM05D004904 ORTHO05D010762 9.9e-14 80.9 145 33.8
Thhalv10029524m.g Eutrema salsugineum HOM05D004904 ORTHO05D012610 9.9e-14 80.9 151 35.1
AL7G45630 Arabidopsis lyrata HOM05D002460 ORTHO05D002716 1.7e-13 80.1 108 45.4
Carub.0003s2589 Capsella rubella HOM05D004904 ORTHO05D012610 1.7e-13 80.1 149 36.9
C09p08640 Brassica napus HOM05D004904 ORTHO05D010762 2.9e-13 79.3 146 35.6
BolC9t53775H Brassica oleracea HOM05D004904 ORTHO05D010762 2.9e-13 79.3 146 35.6
C09p08660 Brassica napus HOM05D004904 ORTHO05D010762 3.8e-13 79.0 147 35.4
BraA09t36422Z Brassica rapa HOM05D004904 ORTHO05D010762 3.8e-13 79.0 146 35.6
Carub.0007s2940 Capsella rubella HOM05D004904 ORTHO05D010762 4.9e-13 78.6 150 33.3
AL7G45640 Arabidopsis lyrata HOM05D004904 ORTHO05D010762 6.4e-13 78.2 117 40.2
AT2G04115 Arabidopsis thaliana HOM05D004904 ORTHO05D012610 8.4e-13 77.8 153 34.6
C08p49590 Brassica napus HOM05D004904 ORTHO05D015396 8.4e-13 77.8 43 76.7
BraA10t43201Z Brassica rapa HOM05D012418 ORTHO05D012993 8.4e-13 77.8 153 31.4
Carub.0007s3224 Capsella rubella HOM05D004904 ORTHO05D010762 8.4e-13 77.8 150 36.0
Thhalv10005113m.g Eutrema salsugineum HOM05D004904 ORTHO05D010762 8.4e-13 77.8 146 34.2
A09p07720 Brassica napus HOM05D004904 ORTHO05D010762 1.1e-12 77.4 146 34.9
Carub.0007s2938 Capsella rubella HOM05D004904 ORTHO05D010762 1.4e-12 77.0 146 32.9
BolC6t38173H Brassica oleracea HOM05D004904 ORTHO05D012610 7.1e-12 74.7 147 33.3
BcaB06g25859 Brassica carinata HOM05D004904 ORTHO05D010762 1.2e-11 73.9 139 37.4
BraA04t16123Z Brassica rapa HOM05D004904 ORTHO05D012458 1.2e-11 73.9 149 31.5
Thhalv10023818m.g Eutrema salsugineum HOM05D004904 ORTHO05D012610 1.6e-11 73.6 110 40.0
A07p27280 Brassica napus HOM05D004904 ORTHO05D012610 2.7e-11 72.8 148 35.1
C06p30060 Brassica napus HOM05D004904 ORTHO05D012610 2.7e-11 72.8 148 35.1
BolC6t38167H Brassica oleracea HOM05D004904 ORTHO05D012610 2.7e-11 72.8 148 35.1
BraA07t30371Z Brassica rapa HOM05D004904 ORTHO05D012610 2.7e-11 72.8 148 35.1
Carub.0002s1683 Capsella rubella HOM05D004904 ORTHO05D012993 2.7e-11 72.8 149 33.6
BolC4t25152H Brassica oleracea HOM05D004904 ORTHO05D012458 6.0e-11 71.6 146 30.8
BraA07t30372Z Brassica rapa HOM05D004904 ORTHO05D012610 1.3e-10 70.5 147 31.3
Thhalv10023047m.g Eutrema salsugineum HOM05D004904 ORTHO05D012610 1.7e-10 70.1 150 36.0
BraA02t05833Z Brassica rapa HOM05D012090 ORTHO05D012993 2.3e-10 69.7 104 36.5
BcaC06g32680 Brassica carinata HOM05D003012 ORTHO05D002833 3.9e-10 68.9 150 34.7
Carub.0007s2993 Capsella rubella HOM05D004904 ORTHO05D012993 6.6e-10 68.2 147 36.1
Carub.0007s2995 Capsella rubella HOM05D004904 ORTHO05D012993 6.6e-10 68.2 147 36.1
CARHR102930 Cardamine hirsuta HOM05D004904 ORTHO05D012993 6.6e-10 68.2 152 32.9
A02p22640 Brassica napus HOM05D011693 ORTHO05D040107 8.7e-10 67.8 165 30.9
Thhalv10026508m.g Eutrema salsugineum HOM05D004904 ORTHO05D012610 8.7e-10 67.8 156 30.8
C06p30120 Brassica napus HOM05D004904 ORTHO05D012610 1.5e-09 67.0 113 32.7
C07p55570 Brassica napus HOM05D003012 ORTHO05D002833 1.9e-09 66.6 150 34.0
Carub.0007s2927 Capsella rubella HOM05D004904 ORTHO05D010762 1.9e-09 66.6 146 31.5
Carub.0007s2936 Capsella rubella HOM05D004904 ORTHO05D010762 1.9e-09 66.6 145 31.7
Thhalv10029254m.g Eutrema salsugineum HOM05D003012 ORTHO05D002833 1.9e-09 66.6 149 35.6
AL3G46880 Arabidopsis lyrata HOM05D004904 ORTHO05D080488 2.5e-09 66.2 158 32.3
AT5G39493 Arabidopsis thaliana HOM05D004904 ORTHO05D010762 2.5e-09 66.2 138 32.6
BolC7t46036H Brassica oleracea HOM05D003012 ORTHO05D002833 4.3e-09 65.5 148 36.5
BraA09t41446Z Brassica rapa HOM05D004904 ORTHO05D012458 5.6e-09 65.1 147 33.3
C09p08620 Brassica napus HOM05D004904 ORTHO05D010762 7.3e-09 64.7 107 37.4
BolC2t09634H Brassica oleracea HOM05D011693 ORTHO05D017562 7.3e-09 64.7 162 28.4
A07p27310 Brassica napus HOM05D004904 ORTHO05D012610 2.8e-08 62.8 116 30.2
BcaB05g25172 Brassica carinata HOM05D011693 ORTHO05D023959 8.1e-08 61.2 148 33.1
A02p22610 Brassica napus HOM05D011693 ORTHO05D023959 8.1e-08 61.2 145 31.7
A02p22560 Brassica napus HOM05D011693 ORTHO05D017562 1.1e-07 60.8 160 28.8
BraA02t07261Z Brassica rapa HOM05D011693 ORTHO05D017562 1.1e-07 60.8 160 28.8
Carub.0001s4014 Capsella rubella HOM05D004904 ORTHO05D012458 1.1e-07 60.8 153 30.7
Thhalv10014983m.g Eutrema salsugineum HOM05D004904 ORTHO05D012993 1.1e-07 60.8 150 34.7
CARHR219950 Cardamine hirsuta HOM05D004904 ORTHO05D010762 2.4e-07 59.7 107 35.5
C02p36200 Brassica napus HOM05D011693 ORTHO05D017562 3.1e-07 59.3 160 28.1
AL3G21820 Arabidopsis lyrata HOM05D004904 ORTHO05D021430 5.3e-07 58.5 135 34.1
C02p36240 Brassica napus HOM05D011693 ORTHO05D017562 5.3e-07 58.5 155 27.7
C08p44310 Brassica napus HOM05D004904 ORTHO05D012458 5.3e-07 58.5 147 32.7
BolC2t09637H Brassica oleracea HOM05D011693 ORTHO05D017562 5.3e-07 58.5 155 27.7
BolC2t11434H Brassica oleracea HOM05D012418 ORTHO05D012993 5.3e-07 58.5 156 30.1
BolC8t51974H Brassica oleracea HOM05D004904 ORTHO05D012458 5.3e-07 58.5 147 32.7
C02p62250 Brassica napus HOM05D004904 ORTHO05D000101 6.9e-07 58.2 69 40.6
A01p24640 Brassica napus HOM05D004904 ORTHO05D002833 9.0e-07 57.8 146 30.8
A08p28430 Brassica napus HOM05D020991 ORTHO05D018426 1.5e-06 57.0 157 28.7
C07p62040 Brassica napus HOM05D004904 ORTHO05D012458 1.5e-06 57.0 149 31.5
AT1G51240 Arabidopsis thaliana HOM05D004904 ORTHO05D012458 2.6e-06 56.2 150 30.7
AT1G51250 Arabidopsis thaliana HOM05D004904 ORTHO05D012458 3.4e-06 55.8 154 31.2
Thhalv10002784m.g Eutrema salsugineum HOM05D004904 ORTHO05D012610 3.4e-06 55.8 150 30.0
AL1G59050 Arabidopsis lyrata HOM05D004904 ORTHO05D012458 4.5e-06 55.5 142 31.7
BolC7t43818H Brassica oleracea HOM05D012418 ORTHO05D012993 4.5e-06 55.5 138 28.3
Thhalv10023144m.g Eutrema salsugineum HOM05D003012 ORTHO05D002833 4.5e-06 55.5 142 31.0
AL1G49150 Arabidopsis lyrata HOM05D004904 ORTHO05D018426 7.6e-06 54.7 156 29.5
AL1G59040 Arabidopsis lyrata HOM05D004904 ORTHO05D012458 7.6e-06 54.7 119 31.1
Aa31LG2G5710 Aethionema arabicum HOM05D008305 ORTHO05D010625 9.9e-06 54.3 104 31.7
AL4G13000 Arabidopsis lyrata HOM05D003012 ORTHO05D002833 9.9e-06 54.3 121 33.9
AT2G23142 Arabidopsis thaliana HOM05D003012 ORTHO05D002833 9.9e-06 54.3 155 30.3
A02p22580 Brassica napus HOM05D011693 ORTHO05D017562 9.9e-06 54.3 155 27.7
BraA02t07262Z Brassica rapa HOM05D011693 ORTHO05D017562 9.9e-06 54.3 155 27.7


User provided reference genes

Program Settings