Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p49440 Brassica napus HOM05D003268 ORTHO05D003719 5.2e-125 451.1 225 100.0
C08p00580 Brassica napus HOM05D003268 ORTHO05D003719 1.4e-117 426.4 226 96.0
A09p65470 Brassica napus HOM05D003268 ORTHO05D003719 4.1e-114 414.8 225 92.4
BraA09t41892Z Brassica rapa HOM05D003268 ORTHO05D003719 4.1e-114 414.8 225 92.4
BolC8t52481H Brassica oleracea HOM05D003268 ORTHO05D003719 9.8e-84 313.9 152 97.4
A06p06210 Brassica napus HOM05D003268 ORTHO05D003719 8.6e-80 300.8 226 69.0
BraA06t23832Z Brassica rapa HOM05D003268 ORTHO05D003719 8.6e-80 300.8 226 69.0
C05p07520 Brassica napus HOM05D003268 ORTHO05D003719 1.6e-78 296.6 214 70.6
BolC5t29506H Brassica oleracea HOM05D003268 ORTHO05D003719 1.6e-78 296.6 214 70.6
Sp1g08120 Schrenkiella parvula HOM05D003268 ORTHO05D003719 9.9e-76 287.3 250 64.0
BcaC07g41877 Brassica carinata HOM05D003268 ORTHO05D003719 7.3e-71 271.2 226 73.9
Thhalv10008580m.g Eutrema salsugineum HOM05D003268 ORTHO05D003719 4.0e-69 265.4 232 63.4
A08p34520 Brassica napus HOM05D003268 ORTHO05D003719 6.4e-67 258.1 225 61.3
BraA08t35363Z Brassica rapa HOM05D003268 ORTHO05D003719 3.2e-66 255.8 214 63.6
BcaC07g36965 Brassica carinata HOM05D003268 ORTHO05D003719 2.1e-65 253.1 124 95.2
AT1G09520 Arabidopsis thaliana HOM05D003268 ORTHO05D003719 1.3e-64 250.4 216 63.0
AL1G20040 Arabidopsis lyrata HOM05D003268 ORTHO05D003719 3.0e-64 249.2 214 63.6
BolC8t48925H Brassica oleracea HOM05D003268 ORTHO05D003719 3.0e-64 249.2 195 64.1
BraA08t35364Z Brassica rapa HOM05D003268 ORTHO05D003719 8.7e-64 247.7 194 67.5
Carub.0001s0886 Capsella rubella HOM05D003268 ORTHO05D003719 8.7e-64 247.7 224 61.6
C08p12950 Brassica napus HOM05D003268 ORTHO05D003719 1.5e-63 246.9 195 65.1
A08p34530 Brassica napus HOM05D003268 ORTHO05D003719 2.1e-62 243.0 194 66.0
CARHR009490 Cardamine hirsuta HOM05D003268 ORTHO05D003719 9.0e-61 237.7 219 58.0
BcaC07g38514 Brassica carinata HOM05D003268 ORTHO05D003719 1.2e-57 227.3 190 63.7
Aa31LG1G5560 Aethionema arabicum HOM05D003268 ORTHO05D003719 2.6e-52 209.5 221 50.2
THA.LOC104820490 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 2.4e-50 203.0 202 51.5
THA.LOC104816841 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 6.0e-49 198.4 201 49.8
BcaC07g38513 Brassica carinata HOM05D003268 ORTHO05D003719 1.3e-46 190.7 227 49.8
Cpa.g.sc48.222 Carica papaya HOM05D003268 ORTHO05D003719 3.7e-38 162.5 184 48.9
Duzib128G0788 Durio zibethinus HOM05D003268 ORTHO05D003719 1.1e-37 161.0 214 43.9
Manes.08G107700 Manihot esculenta HOM05D003268 ORTHO05D003719 4.1e-37 159.1 199 46.7
COL.COLO4_05489 Corchorus olitorius HOM05D003268 ORTHO05D003719 2.0e-36 156.8 183 46.4
Gohir.A13G177600 Gossypium hirsutum HOM05D003268 ORTHO05D003719 1.7e-35 153.7 189 48.1
Thecc.05G329300 Theobroma cacao HOM05D003268 ORTHO05D003719 2.9e-35 152.9 193 47.7
Gohir.D13G184200 Gossypium hirsutum HOM05D003268 ORTHO05D003719 5.0e-35 152.1 186 48.4
Gorai.013G209800 Gossypium raimondii HOM05D003268 ORTHO05D003719 5.0e-35 152.1 186 48.4
TWI56G0501 Tripterygium wilfordii HOM05D003268 ORTHO05D003719 1.4e-34 150.6 213 45.5
ClCG03G017870 Citrullus lanatus HOM05D003268 ORTHO05D003719 2.3e-32 143.3 177 46.3
CANSAT54G2527 Cannabis sativa HOM05D003268 ORTHO05D003719 5.7e-31 138.7 213 41.8
Sed0007403 Sechium edule HOM05D003268 ORTHO05D003719 7.4e-31 138.3 173 45.1
FvH4_6g08440 Fragaria vesca HOM05D003268 ORTHO05D003719 6.3e-30 135.2 202 43.1
FAN14G0797 Fragaria x ananassa HOM05D003268 ORTHO05D003719 6.3e-30 135.2 202 43.1
Ciclev10013870m.g Citrus clementina HOM05D003268 ORTHO05D003719 1.4e-29 134.0 151 49.7
Atru.chr12.1545 Acer truncatum HOM05D003268 ORTHO05D003719 1.8e-29 133.7 163 45.4
RcHm_v2.0_Chr3g0458411 Rosa chinensis HOM05D003268 ORTHO05D003719 3.1e-29 132.9 167 45.5
CsaV3_1G038030 Cucumis sativus L. HOM05D003268 ORTHO05D003719 1.2e-28 131.0 182 45.1
MELO3C015242.2 Cucumis melo HOM05D003268 ORTHO05D003719 1.5e-28 130.6 182 44.5
Haze_00767 Corylus avellana HOM05D003268 ORTHO05D003719 2.6e-28 129.8 160 47.5
FAN02G3445 Fragaria x ananassa HOM05D003268 ORTHO05D003719 2.6e-28 129.8 213 40.8
CiPaw.07G035600 Carya illinoinensis HOM05D003268 ORTHO05D003719 2.9e-27 126.3 179 42.5
Cpa.g.sc53.77 Carica papaya HOM05D003268 ORTHO05D003719 3.8e-27 125.9 197 40.6
Medtr1g484850 Medicago truncatula HOM05D003268 ORTHO05D003719 8.5e-27 124.8 188 39.9
Dinv30944 Davidia involucrata HOM05D003268 ORTHO05D003719 1.1e-26 124.4 174 42.5
Sc16g0009390 Simmondsia chinensis HOM05D003268 ORTHO05D003719 1.9e-26 123.6 169 40.8
THA.LOC104821812 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 4.2e-26 122.5 158 44.3
Cc02_g35810 Coffea canephora HOM05D003268 ORTHO05D003719 7.2e-26 121.7 208 40.9
FAN09G1400 Fragaria x ananassa HOM05D003268 ORTHO05D003719 4.6e-25 119.0 205 39.5
Nitab4.5_0002485g0060 Nicotiana tabacum HOM05D003268 ORTHO05D003719 1.0e-24 117.9 179 43.0
COL.COLO4_34517 Corchorus olitorius HOM05D003268 ORTHO05D003719 1.4e-24 117.5 194 39.2
Actinidia11688 Actinidia chinensis HOM05D003268 ORTHO05D003719 1.8e-24 117.1 191 40.8
Nitab4.5_0005904g0060 Nicotiana tabacum HOM05D003268 ORTHO05D003719 1.8e-24 117.1 180 43.9
TAR636G0250 Trochodendron aralioides HOM05D003268 ORTHO05D003719 3.0e-24 116.3 181 39.2
Haze_03993 Corylus avellana HOM05D003268 ORTHO05D003719 3.9e-24 115.9 176 41.5
Oeu023379.1 Olea europaea HOM05D003268 ORTHO05D003719 3.9e-24 115.9 191 40.3
Hma1.2p1_0759F.1_g213940 Hydrangea macrophylla HOM05D003268 ORTHO05D003719 5.1e-24 115.5 181 42.0
Lj5g0018140 Lotus japonicus HOM05D003268 ORTHO05D003719 8.8e-24 114.8 184 39.7
Oeu023377.1 Olea europaea HOM05D003268 ORTHO05D003719 8.8e-24 114.8 191 40.3
SalBow4G1159 Salvia bowleyana HOM05D003268 ORTHO05D003719 1.1e-23 114.4 205 39.0
Solyc01g101160.2 Solanum lycopersicum HOM05D003268 ORTHO05D003719 1.1e-23 114.4 201 38.3
Sopen01g044640 Solanum pennellii HOM05D003268 ORTHO05D003719 1.1e-23 114.4 201 38.3
Atru.chr4.3150 Acer truncatum HOM05D003268 ORTHO05D003719 2.5e-23 113.2 169 39.6
Duzib212G0032 Durio zibethinus HOM05D003268 ORTHO05D003719 2.5e-23 113.2 184 37.0
Lj5P319T26 Lonicera japonica HOM05D003268 ORTHO05D003719 5.7e-23 112.1 181 40.9
PGSC0003DMG400044126 Solanum tuberosum HOM05D003268 ORTHO05D003719 5.7e-23 112.1 184 39.1
Glyma.10G143800 Glycine max HOM05D003268 ORTHO05D003719 7.4e-23 111.7 197 36.5
SGA_v2.0_scaffold22G09705 Striga asiatica HOM05D003268 ORTHO05D003719 7.4e-23 111.7 195 41.5
TAR633G0292 Trochodendron aralioides HOM05D003268 ORTHO05D003719 7.4e-23 111.7 177 37.3
Cfa015729 Carpinus fangiana HOM05D003268 ORTHO05D003719 9.7e-23 111.3 160 42.5
Gohir.D02G064200 Gossypium hirsutum HOM05D003268 ORTHO05D003719 9.7e-23 111.3 185 37.3
Gorai.005G072500 Gossypium raimondii HOM05D003268 ORTHO05D003719 9.7e-23 111.3 185 37.3
Thecc.04G313000 Theobroma cacao HOM05D003268 ORTHO05D003719 9.7e-23 111.3 185 35.7
TAR362G1252 Trochodendron aralioides HOM05D003268 ORTHO05D003719 9.7e-23 111.3 203 37.4
Phvul.007G204700 Phaseolus vulgaris HOM05D003268 ORTHO05D003719 1.3e-22 110.9 192 38.0
QL06p014213 Quercus lobata HOM05D003268 ORTHO05D003719 1.7e-22 110.5 190 35.8
CiPaw.01G129300 Carya illinoinensis HOM05D003268 ORTHO05D003719 2.2e-22 110.2 188 39.4
Gohir.A02G058400 Gossypium hirsutum HOM05D003268 ORTHO05D003719 2.2e-22 110.2 185 37.8
Lalb_Chr02g0147571 Lupinus albus HOM05D003268 ORTHO05D003719 2.8e-22 109.8 200 37.0
CAN.G1248.20 Capsicum annuum HOM05D003268 ORTHO05D003719 3.7e-22 109.4 174 40.2
Psat6g155480 Pisum sativum HOM05D003268 ORTHO05D003719 3.7e-22 109.4 199 36.7
PSO170G4270 Papaver somniferum HOM05D003268 ORTHO05D003719 4.8e-22 109.0 185 37.8
Manes.11G020800 Manihot esculenta HOM05D003268 ORTHO05D003719 6.3e-22 108.6 174 40.2
CSS0047817 Camellia sinensis var. sinensis HOM05D003268 ORTHO05D003719 1.1e-21 107.8 186 39.2
Lj6P701T18 Lonicera japonica HOM05D003268 ORTHO05D003719 1.1e-21 107.8 188 35.6
VMungo0720G1780 Vigna mungo HOM05D003268 ORTHO05D003719 1.1e-21 107.8 198 36.4
MSTRG.16427 Avicennia marina HOM05D003268 ORTHO05D003719 1.4e-21 107.5 179 39.1
Ca_10197_v3 Cicer arietinum L. HOM05D003268 ORTHO05D003719 3.1e-21 106.3 187 36.9
PSO761G0464 Papaver somniferum HOM05D003268 ORTHO05D003719 3.1e-21 106.3 177 36.7
PGR031G0843 Punica granatum HOM05D003268 ORTHO05D003719 3.1e-21 106.3 233 35.2
Glyma.20G092502 Glycine max HOM05D003268 ORTHO05D003719 5.3e-21 105.5 183 37.2
Oeu016542.1 Olea europaea HOM05D003268 ORTHO05D003719 5.3e-21 105.5 191 38.7
Dinv29508 Davidia involucrata HOM05D003268 ORTHO05D003719 9.1e-21 104.8 170 38.2
TPR.G2590 Trifolium pratense HOM05D003268 ORTHO05D003719 1.5e-20 104.0 209 36.4
vmacro01600 Vaccinium macrocarpon HOM05D003268 ORTHO05D003719 1.5e-20 104.0 144 42.4
Glyma.17G041900 Glycine max HOM05D003268 ORTHO05D003719 2.0e-20 103.6 189 37.0
PSO210G7784 Papaver somniferum HOM05D003268 ORTHO05D003719 2.0e-20 103.6 184 36.4
Migut.N00971 Erythranthe guttata HOM05D003268 ORTHO05D003719 2.6e-20 103.2 185 37.8
QL03p010269 Quercus lobata HOM05D003268 ORTHO05D003719 2.6e-20 103.2 238 33.6
QL03p010503 Quercus lobata HOM05D003268 ORTHO05D003719 2.6e-20 103.2 238 33.6
Potri.010G002200 Populus trichocarpa HOM05D003268 ORTHO05D003719 4.5e-20 102.4 172 38.4
ECA240G0886 Erigeron canadensis HOM05D003268 ORTHO05D003719 1.0e-19 101.3 175 38.9
MBI19_g47476_MAGBIO Magnolia biondii HOM05D003268 ORTHO05D003719 1.0e-19 101.3 175 39.4
Lalb_Chr06g0167311 Lupinus albus HOM05D003268 ORTHO05D003719 1.3e-19 100.9 205 34.6
Lalb_Chr13g0299031 Lupinus albus HOM05D003268 ORTHO05D003719 1.3e-19 100.9 177 37.3
Oeu020279.1 Olea europaea HOM05D003268 ORTHO05D003719 1.3e-19 100.9 180 37.2
Migut.O00762 Erythranthe guttata HOM05D003268 ORTHO05D003719 1.7e-19 100.5 180 37.8
Aa31LG1G5600 Aethionema arabicum HOM05D003268 ORTHO05D003719 2.2e-19 100.1 116 44.8
Sabra10G0001700 Salix brachista HOM05D003268 ORTHO05D003719 2.2e-19 100.1 172 38.4
Aa31LG8G4410 Aethionema arabicum HOM05D002272 ORTHO05D005405 2.9e-19 99.8 196 36.2
VMungo1215G0793 Vigna mungo HOM05D003268 ORTHO05D003719 2.9e-19 99.8 193 36.8
HPP92_012769 Vanilla planifolia HOM05D003268 ORTHO05D003719 6.5e-19 98.6 208 34.1
Glyma.13G118100 Glycine max HOM05D003268 ORTHO05D003719 1.1e-18 97.8 189 35.4
SalBow5G1243 Salvia bowleyana HOM05D003268 ORTHO05D003719 1.1e-18 97.8 163 38.7
MD13G1139400 Malus domestica HOM05D003268 ORTHO05D003719 3.2e-18 96.3 177 38.4
Rhsim11G0103200 Rhododendron simsii HOM05D003268 ORTHO05D003719 3.2e-18 96.3 181 36.5
Ciclev10005819m.g Citrus clementina HOM05D003268 ORTHO05D003719 7.2e-18 95.1 193 35.2
Phvul.003G123200 Phaseolus vulgaris HOM05D003268 ORTHO05D003719 9.4e-18 94.7 193 35.8
MD16G1136300 Malus domestica HOM05D003268 ORTHO05D003719 1.2e-17 94.4 199 35.2
Lalb_Chr07g0181591 Lupinus albus HOM05D003268 ORTHO05D003719 1.6e-17 94.0 191 34.6
TWI09G0361 Tripterygium wilfordii HOM05D003268 ORTHO05D003719 1.6e-17 94.0 165 35.8
Oeu034985.1 Olea europaea HOM05D003268 ORTHO05D003719 2.1e-17 93.6 182 36.8
MSTRG.20352 Avicennia marina HOM05D003268 ORTHO05D003719 2.7e-17 93.2 173 35.8
HanXRQChr09g0250221 Helianthus annuus HOM05D003268 ORTHO05D003719 2.7e-17 93.2 184 38.6
RcHm_v2.0_Chr4g0427521 Rosa chinensis HOM05D003268 ORTHO05D003719 2.7e-17 93.2 177 36.2
MELO3C006751.2 Cucumis melo HOM05D003268 ORTHO05D003719 6.1e-17 92.0 210 33.8
DCAR_001893 Daucus carota HOM05D003268 ORTHO05D003719 6.1e-17 92.0 192 31.8
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 6.1e-17 92.0 203 34.0
Thhalv10022081m.g Eutrema salsugineum HOM05D003268 ORTHO05D003719 7.9e-17 91.7 203 35.0
Sed0010166 Sechium edule HOM05D003268 ORTHO05D003719 7.9e-17 91.7 186 33.9
unitig_8.g4507 Utricularia gibba HOM05D003268 ORTHO05D003719 1.4e-16 90.9 223 32.7
SHI00050 Sapria himalayana HOM05D002272 ORTHO05D005405 1.8e-16 90.5 187 34.2
BcaB04g20839 Brassica carinata HOM05D003268 ORTHO05D003719 3.9e-16 89.4 169 36.7
Ah.10g026900 Amaranthus hybridus HOM05D003268 ORTHO05D003719 5.1e-16 89.0 192 32.8
BcaC09g48702 Brassica carinata HOM05D003268 ORTHO05D003719 5.1e-16 89.0 185 35.7
C01p46780 Brassica napus HOM05D003268 ORTHO05D003719 5.1e-16 89.0 185 35.7
BolC1t04651H Brassica oleracea HOM05D003268 ORTHO05D003719 5.1e-16 89.0 185 35.7
BcaC09g48706 Brassica carinata HOM05D003268 ORTHO05D003719 6.7e-16 88.6 172 36.6
BolC1t04640H Brassica oleracea HOM05D003268 ORTHO05D003719 6.7e-16 88.6 172 36.6
Sed0001415 Sechium edule HOM05D003268 ORTHO05D003719 8.8e-16 88.2 203 36.0
HanXRQChr10g0294291 Helianthus annuus HOM05D003268 ORTHO05D003719 1.1e-15 87.8 174 32.8
Aqoxy2G02513 Aquilegia oxysepala HOM05D003268 ORTHO05D003719 2.6e-15 86.7 172 34.3
Ca_21366_v3 Cicer arietinum L. HOM05D003268 ORTHO05D003719 2.6e-15 86.7 188 34.6
ECA234G2755 Erigeron canadensis HOM05D003268 ORTHO05D003719 5.7e-15 85.5 177 36.2
Medtr4g124100 Medicago truncatula HOM05D003268 ORTHO05D003719 9.7e-15 84.7 180 35.6
Solyc03g114270.1 Solanum lycopersicum HOM05D003268 ORTHO05D003719 2.8e-14 83.2 157 33.1
Sopen03g033360 Solanum pennellii HOM05D003268 ORTHO05D003796 2.8e-14 83.2 157 33.1
Migut.B00893 Erythranthe guttata HOM05D003268 ORTHO05D003719 4.8e-14 82.4 190 30.5
PGSC0003DMG400044873 Solanum tuberosum HOM05D003268 ORTHO05D003719 8.2e-14 81.6 156 33.3
PGSC0003DMG401019388 Solanum tuberosum HOM05D003268 ORTHO05D003719 8.2e-14 81.6 158 31.6
TPR.G12613 Trifolium pratense HOM05D003268 ORTHO05D003719 8.2e-14 81.6 196 33.2
HanXRQChr09g0248281 Helianthus annuus HOM05D003268 ORTHO05D003719 1.8e-13 80.5 180 35.6
Migut.B00880 Erythranthe guttata HOM05D003268 ORTHO05D003719 2.4e-13 80.1 178 32.0
Nitab4.5_0001808g0030 Nicotiana tabacum HOM05D003268 ORTHO05D003719 2.4e-13 80.1 155 35.5
Sopen10g005750 Solanum pennellii HOM05D003268 ORTHO05D003719 2.4e-13 80.1 173 32.4
PGSC0003DMG400024495 Solanum tuberosum HOM05D003268 ORTHO05D003719 2.4e-13 80.1 157 32.5
Actinidia17741 Actinidia chinensis HOM05D003268 ORTHO05D003719 3.1e-13 79.7 119 44.5
Potri.008G206600 Populus trichocarpa HOM05D003268 ORTHO05D003719 3.1e-13 79.7 133 36.8
Solyc10g011990.1 Solanum lycopersicum HOM05D003268 ORTHO05D003719 4.1e-13 79.3 173 32.4
BcaC05g28789 Brassica carinata HOM05D003268 ORTHO05D003719 1.2e-12 77.8 172 32.0
Nitab4.5_0000039g0190 Nicotiana tabacum HOM05D003268 ORTHO05D003719 2.0e-12 77.0 154 33.1
CsaV3_3G015530 Cucumis sativus L. HOM05D003268 ORTHO05D003719 4.5e-12 75.9 214 31.3
Psat0s1206g0240 Pisum sativum HOM05D003268 ORTHO05D003719 4.5e-12 75.9 196 32.1
FAN05G0723 Fragaria x ananassa HOM05D003268 ORTHO05D003719 9.4e-10 68.2 78 42.3
CARHR092780 Cardamine hirsuta HOM05D003268 ORTHO05D003719 4.7e-09 65.9 203 28.1
ATR0796G330 Amborella trichopoda HOM05D003268 ORTHO05D003719 6.1e-09 65.5 206 27.7
unitig_578.g15945 Utricularia gibba HOM05D003268 ORTHO05D003719 4.0e-08 62.8 84 39.3
Os05g0277200 Oryza sativa ssp. japonica HOM05D003268 ORTHO05D003719 1.7e-06 57.4 209 28.2
vmacro22837 Vaccinium macrocarpon HOM05D003268 ORTHO05D003719 1.7e-06 57.4 81 42.0


User provided reference genes

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