Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g41857 Brassica carinata HOM05D003877 ORTHO05D004647 6.1e-285 983.4 479 100.0
C08p49240 Brassica napus HOM05D003877 ORTHO05D004647 6.1e-285 983.4 479 100.0
BolC8t52459H Brassica oleracea HOM05D003877 ORTHO05D004647 6.1e-285 983.4 479 100.0
BraA09t41875Z Brassica rapa HOM05D003877 ORTHO05D004647 2.3e-276 954.9 479 96.7
A09p65300 Brassica napus HOM05D003877 ORTHO05D004647 4.0e-276 954.1 479 96.7
BraA06t23872Z Brassica rapa HOM05D003877 ORTHO05D004647 8.6e-263 909.8 489 91.0
Sp1g08500 Schrenkiella parvula HOM05D003877 ORTHO05D004647 4.3e-262 907.5 487 90.8
BolC5t29551H Brassica oleracea HOM05D003877 ORTHO05D004647 7.6e-259 896.7 488 89.8
A06p06580 Brassica napus HOM05D003877 ORTHO05D004647 2.2e-258 895.2 489 89.6
Thhalv10007485m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 4.9e-258 894.0 488 89.5
Carub.0001s0925 Capsella rubella HOM05D003877 ORTHO05D004647 2.4e-257 891.7 488 89.3
C05p07990 Brassica napus HOM05D003877 ORTHO05D004647 1.6e-256 889.0 488 88.9
AL1G20470 Arabidopsis lyrata HOM05D003877 ORTHO05D004647 1.7e-255 885.6 488 88.5
AT1G09870 Arabidopsis thaliana HOM05D003877 ORTHO05D004647 3.0e-255 884.8 488 88.5
CARHR009900 Cardamine hirsuta HOM05D003877 ORTHO05D004647 5.1e-255 884.0 483 89.2
BcaC05g24837 Brassica carinata HOM05D003877 ORTHO05D004647 1.2e-251 872.8 470 90.2
Aa31LG1G5020 Aethionema arabicum HOM05D003877 ORTHO05D004647 1.2e-235 819.7 485 82.5
Thhalv10002208m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 5.1e-223 777.7 425 89.2
THA.LOC104810121 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 1.3e-218 763.1 485 77.9
THA.LOC104824338 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 6.7e-215 750.7 461 78.1
Thecc.10G011300 Theobroma cacao HOM05D003877 ORTHO05D004647 2.4e-196 689.1 468 69.0
MD01G1157500 Malus domestica HOM05D003877 ORTHO05D004647 1.9e-193 679.5 486 65.8
Ca_15152_v3 Cicer arietinum L. HOM05D003877 ORTHO05D004647 2.7e-192 675.6 485 66.2
Cpa.g.sc19.135 Carica papaya HOM05D003877 ORTHO05D004647 8.0e-192 674.1 449 69.7
Duzib106G1591 Durio zibethinus HOM05D003877 ORTHO05D004647 1.8e-191 672.9 471 67.7
Dinv10589 Davidia involucrata HOM05D003877 ORTHO05D004647 5.2e-191 671.4 493 64.7
Gorai.010G195300 Gossypium raimondii HOM05D003877 ORTHO05D004647 4.4e-190 668.3 487 64.9
Gorai.012G079000 Gossypium raimondii HOM05D003877 ORTHO05D004647 4.4e-190 668.3 474 66.5
TWI09G1304 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 4.4e-190 668.3 465 67.5
Gohir.A06G161800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 3.7e-189 665.2 487 64.9
Potri.008G072600 Populus trichocarpa HOM05D003877 ORTHO05D004647 3.7e-189 665.2 470 67.4
Gohir.D06G167400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 4.8e-189 664.8 487 64.7
Gohir.D04G070400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.4e-188 663.3 465 66.5
GSVIVG01032758001 Vitis vinifera HOM05D003877 ORTHO05D004647 4.1e-188 661.8 465 67.1
TWI73G0349 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 7.0e-188 661.0 469 66.7
Potri.010G184600 Populus trichocarpa HOM05D003877 ORTHO05D004647 3.5e-187 658.7 462 66.5
Medtr3g071580 Medicago truncatula HOM05D003877 ORTHO05D004647 4.5e-187 658.3 494 64.6
PGR142G4288 Punica granatum HOM05D003877 ORTHO05D004647 4.5e-187 658.3 459 68.0
Lalb_Chr08g0231521 Lupinus albus HOM05D003877 ORTHO05D004647 5.9e-187 657.9 467 66.2
Actinidia29719 Actinidia chinensis HOM05D003877 ORTHO05D004647 8.5e-186 654.1 488 63.1
arahy.Tifrunner.gnm1.ann1.EHZF9M Arachis hypogaea HOM05D003877 ORTHO05D004647 1.1e-185 653.7 473 64.3
Lalb_Chr23g0277091 Lupinus albus HOM05D003877 ORTHO05D004647 1.5e-185 653.3 465 65.8
TAR623G0028 Trochodendron aralioides HOM05D003877 ORTHO05D004647 1.9e-185 652.9 489 62.6
Lj6g0018000 Lotus japonicus HOM05D003877 ORTHO05D004647 3.2e-185 652.1 485 63.9
Manes.10G009000 Manihot esculenta HOM05D003877 ORTHO05D004647 3.2e-185 652.1 494 63.6
CSS0042673 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 4.2e-185 651.7 465 65.8
Sopen06g016790 Solanum pennellii HOM05D003877 ORTHO05D004647 7.2e-185 651.0 453 67.5
Glyma.05G080100 Glycine max HOM05D003877 ORTHO05D004647 3.6e-184 648.7 478 64.6
Lj1C785G15 Lonicera japonica HOM05D003877 ORTHO05D004647 3.6e-184 648.7 476 65.1
Ciclev10031326m.g Citrus clementina HOM05D003877 ORTHO05D004647 4.7e-184 648.3 457 65.9
FAN01G0819 Fragaria x ananassa HOM05D003877 ORTHO05D004647 6.1e-184 647.9 477 64.6
FAN10G2809 Fragaria x ananassa HOM05D003877 ORTHO05D004647 6.1e-184 647.9 477 64.6
Nitab4.5_0003391g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 8.0e-184 647.5 469 65.2
Prupe.2G255400 Prunus persica HOM05D003877 ORTHO05D004647 8.0e-184 647.5 465 65.8
Rhsim03G0146600 Rhododendron simsii HOM05D003877 ORTHO05D004647 8.0e-184 647.5 463 64.1
vmacro17690 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 8.0e-184 647.5 456 65.8
arahy.Tifrunner.gnm1.ann1.ZCM4RK Arachis hypogaea HOM05D003877 ORTHO05D004647 1.0e-183 647.1 483 64.0
Glyma.18G024700 Glycine max HOM05D003877 ORTHO05D004647 1.0e-183 647.1 475 64.8
Solyc06g050990.3 Solanum lycopersicum HOM05D003877 ORTHO05D004647 1.8e-183 646.4 453 67.1
PGSC0003DMG400030038 Solanum tuberosum HOM05D003877 ORTHO05D004647 1.8e-183 646.4 486 63.4
GSVIVG01032757001 Vitis vinifera HOM05D003877 ORTHO05D004647 1.8e-183 646.4 478 64.0
arahy.Tifrunner.gnm1.ann1.EJG72V Arachis hypogaea HOM05D003877 ORTHO05D004647 2.3e-183 646.0 491 62.9
QL08p063706 Quercus lobata HOM05D003877 ORTHO05D004647 2.3e-183 646.0 468 66.0
Phvul.006G048800 Phaseolus vulgaris HOM05D003877 ORTHO05D004647 4.0e-183 645.2 481 64.7
FvH4_7g25060 Fragaria vesca HOM05D003877 ORTHO05D004647 5.2e-183 644.8 477 64.4
FAN03G0426 Fragaria x ananassa HOM05D003877 ORTHO05D004647 5.2e-183 644.8 477 64.4
TAR633G0464 Trochodendron aralioides HOM05D003877 ORTHO05D004647 6.8e-183 644.4 469 64.2
CiPaw.02G195400 Carya illinoinensis HOM05D003877 ORTHO05D004647 1.2e-182 643.7 464 66.6
RcHm_v2.0_Chr1g0370931 Rosa chinensis HOM05D003877 ORTHO05D004647 1.2e-182 643.7 479 64.5
Eucgr.G03086 Eucalyptus grandis HOM05D003877 ORTHO05D004647 1.5e-182 643.3 481 64.4
FAN06G1542 Fragaria x ananassa HOM05D003877 ORTHO05D004647 2.0e-182 642.9 477 63.9
Sopen05g031010 Solanum pennellii HOM05D003877 ORTHO05D004647 2.6e-182 642.5 475 64.6
Peaxi162Scf00284g00528 Petunia axillaris HOM05D003877 ORTHO05D004647 9.8e-182 640.6 460 65.7
CAN.G1268.9 Capsicum annuum HOM05D003877 ORTHO05D004647 1.7e-181 639.8 470 64.0
Nitab4.5_0000789g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 2.2e-181 639.4 456 66.4
DCAR_011841 Daucus carota HOM05D003877 ORTHO05D004647 8.3e-181 637.5 477 63.7
Nitab4.5_0000058g0130 Nicotiana tabacum HOM05D003877 ORTHO05D004647 1.4e-180 636.7 521 60.7
VMungo0540G0037 Vigna mungo HOM05D003877 ORTHO05D004647 1.8e-180 636.3 475 64.0
Manes.07G134500 Manihot esculenta HOM05D003877 ORTHO05D004647 2.4e-180 636.0 469 64.4
Lsat_1_v5_gn_9_123441 Lactuca sativa HOM05D003877 ORTHO05D004647 3.1e-180 635.6 467 64.2
Sabra10G0141800 Salix brachista HOM05D003877 ORTHO05D004647 3.1e-180 635.6 492 61.2
Nn7g35848 Nelumbo nucifera HOM05D003877 ORTHO05D004647 5.4e-180 634.8 475 63.4
Nitab4.5_0005049g0030 Nicotiana tabacum HOM05D003877 ORTHO05D004647 7.0e-180 634.4 517 60.5
Gohir.A05G331800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 9.1e-180 634.0 464 64.9
ECA233G0637 Erigeron canadensis HOM05D003877 ORTHO05D004647 1.2e-179 633.6 457 66.1
Sed0008918 Sechium edule HOM05D003877 ORTHO05D004647 1.6e-179 633.3 490 63.5
Haze_17269 Corylus avellana HOM05D003877 ORTHO05D004647 1.7e-178 629.8 430 68.8
Peaxi162Scf01149g00319 Petunia axillaris HOM05D003877 ORTHO05D004647 2.3e-178 629.4 460 64.8
AUR62022935 Chenopodium quinoa HOM05D003877 ORTHO05D004647 6.6e-178 627.9 477 62.7
Migut.F00639 Erythranthe guttata HOM05D003877 ORTHO05D004647 2.5e-177 625.9 469 63.8
CANSAT56G2949 Cannabis sativa HOM05D003877 ORTHO05D004647 3.3e-177 625.5 459 63.8
MSTRG.8927 Avicennia marina HOM05D003877 ORTHO05D004647 5.5e-177 624.8 493 61.5
HanXRQChr08g0221971 Helianthus annuus HOM05D003877 ORTHO05D004647 5.5e-177 624.8 478 63.2
Aqoxy2G01450 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 7.2e-177 624.4 458 64.4
Aqoxy1G01313 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 2.1e-176 622.9 450 64.9
Hund13891 Selenicereus undatus HOM05D003877 ORTHO05D004647 2.1e-176 622.9 486 61.5
Cc02_g06060 Coffea canephora HOM05D003877 ORTHO05D004647 4.7e-176 621.7 505 58.4
PSO801G0566 Papaver somniferum HOM05D003877 ORTHO05D004647 1.8e-175 619.8 469 61.4
Sc11g0005270 Simmondsia chinensis HOM05D003877 ORTHO05D004647 1.8e-175 619.8 452 64.2
AUR62012296 Chenopodium quinoa HOM05D003877 ORTHO05D004647 7.5e-174 614.4 477 62.1
SGA_v2.0_scaffold2G01375 Striga asiatica HOM05D003877 ORTHO05D004647 2.2e-173 612.8 464 63.8
Oeu056656.1 Olea europaea HOM05D003877 ORTHO05D004647 1.8e-172 609.8 467 62.1
Dinv21772 Davidia involucrata HOM05D003877 ORTHO05D004647 2.4e-172 609.4 424 67.2
Sabra08G0053900 Salix brachista HOM05D003877 ORTHO05D004647 1.2e-171 607.1 514 57.6
EL10Ac2g04887 Beta vulgaris HOM05D003877 ORTHO05D004647 4.6e-171 605.1 480 61.7
vmacro10004 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 7.8e-171 604.4 565 53.1
SGA_v2.0_scaffold60G20966 Striga asiatica HOM05D003877 ORTHO05D004647 3.9e-170 602.1 529 57.7
SGA_v2.0_scaffold85G26692 Striga asiatica HOM05D003877 ORTHO05D004647 1.9e-169 599.7 479 61.6
CDE04G1002 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 9.5e-169 597.4 465 60.4
CsaV3_5G010390 Cucumis sativus L. HOM05D003877 ORTHO05D004647 3.6e-168 595.5 452 63.5
Hund15887 Selenicereus undatus HOM05D003877 ORTHO05D004647 8.0e-168 594.3 454 61.7
CSS0004354 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.0e-167 594.0 403 68.0
PGSC0003DMG400027120 Solanum tuberosum HOM05D003877 ORTHO05D004647 4.0e-167 592.0 430 66.7
PSO349G0168 Papaver somniferum HOM05D003877 ORTHO05D004647 2.6e-166 589.3 452 61.1
ATR0068G102 Amborella trichopoda HOM05D003877 ORTHO05D004647 3.4e-166 589.0 472 60.2
MELO3C018375.2 Cucumis melo HOM05D003877 ORTHO05D004647 5.8e-166 588.2 477 61.0
vmacro17691 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 2.2e-165 586.3 480 59.2
ClCG07G004500 Citrullus lanatus HOM05D003877 ORTHO05D004647 1.1e-164 583.9 433 65.1
MELO3C034227.2 Cucumis melo HOM05D003877 ORTHO05D004647 2.0e-163 579.7 484 61.0
PSO339G0345 Papaver somniferum HOM05D003877 ORTHO05D004647 2.0e-163 579.7 478 57.7
Os03g0818100 Oryza sativa ssp. japonica HOM05D003877 ORTHO05D004647 2.7e-163 579.3 444 61.3
SalBow3G1521 Salvia bowleyana HOM05D003877 ORTHO05D004647 1.0e-162 577.4 623 48.5
Ah.10g036260 Amaranthus hybridus HOM05D003877 ORTHO05D004647 3.9e-162 575.5 545 53.6
Sed0009338 Sechium edule HOM05D003877 ORTHO05D004647 1.1e-161 573.9 455 61.3
CSS0043221 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 3.3e-161 572.4 379 68.9
CSS0044757 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 3.3e-161 572.4 379 68.9
Psat5g130920 Pisum sativum HOM05D003877 ORTHO05D004647 8.9e-159 564.3 443 60.5
CsaV3_5G010430 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.5e-158 563.5 477 60.8
Zm00001eb062330 Zea mays HOM05D003877 ORTHO05D004647 4.4e-158 562.0 467 58.9
ATR0681G014 Amborella trichopoda HOM05D003877 ORTHO05D004647 3.7e-157 558.9 437 62.9
Prupe.6G130900 Prunus persica HOM05D003877 ORTHO05D004647 1.4e-156 557.0 489 56.6
Lsat_1_v5_gn_9_60880 Lactuca sativa HOM05D003877 ORTHO05D004647 7.1e-156 554.7 441 60.1
Atru.chr12.96 Acer truncatum HOM05D003877 ORTHO05D004647 8.9e-151 537.7 417 63.1
CsaV3_5G010400 Cucumis sativus L. HOM05D003877 ORTHO05D004647 3.2e-140 502.7 478 55.0
Mapoly0029s0098 Marchantia polymorpha HOM05D003877 ORTHO05D004647 6.9e-135 485.0 471 50.3
unitig_16.g32857 Utricularia gibba HOM05D003877 ORTHO05D004647 1.5e-134 483.8 477 51.6
SMO271G0017 Selaginella moellendorffii HOM05D003877 ORTHO05D004647 4.2e-132 475.7 442 51.8
CDE06G2086 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 8.1e-128 461.5 441 52.8
CSS0003433 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.2e-125 453.4 377 59.2
Solyc05g052480.4 Solanum lycopersicum HOM05D003877 ORTHO05D004647 8.4e-125 451.4 335 66.3
Pp3c24_6790 Physcomitrium patens HOM05D003877 ORTHO05D004647 2.1e-123 446.8 455 49.0
Pp3c8_15050 Physcomitrium patens HOM05D003877 ORTHO05D004647 8.4e-117 424.9 411 50.6
AagrBONN_evm.TU.Sc2ySwM_344.2788 Anthoceros agrestis HOM05D003877 ORTHO05D004647 1.4e-111 407.5 513 43.9
HPP92_019712 Vanilla planifolia HOM05D003877 ORTHO05D004647 1.8e-106 390.6 300 62.0
SalBow3G0419 Salvia bowleyana HOM05D003877 ORTHO05D004647 8.8e-98 361.7 264 65.5
unitig_8.g4098 Utricularia gibba HOM05D003877 ORTHO05D004647 1.9e-76 290.8 297 50.2
SalBow3G3178 Salvia bowleyana HOM05D003877 ORTHO05D004647 5.2e-74 282.7 201 63.2
CsaV3_2G012250 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.2e-67 261.5 204 62.7
SGA_v2.0_scaffold85G26702 Striga asiatica HOM05D003877 ORTHO05D004647 8.9e-50 202.2 208 50.0
SEGI_29662 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 2.3e-45 187.6 151 59.6
CBR_g38028 Chara braunii HOM05D003877 ORTHO05D004647 6.4e-40 169.5 301 35.2
Cre13.g568600 Chlamydomonas reinhardtii HOM05D003877 ORTHO05D004647 2.1e-38 164.5 430 30.2
TPR.G10202 Trifolium pratense HOM05D003877 ORTHO05D004647 3.0e-37 160.6 106 69.8
Manes.09G077219 Manihot esculenta HOM05D003877 ORTHO05D004647 3.3e-36 157.1 100 71.0
TAR626G1532 Trochodendron aralioides HOM05D003877 ORTHO05D004647 1.1e-31 142.1 148 52.0
Manes.18G042850 Manihot esculenta HOM05D003877 ORTHO05D004647 7.3e-28 129.4 116 56.9
Manes.06G044901 Manihot esculenta HOM05D003877 ORTHO05D004647 1.2e-27 128.6 114 57.0
Lsat_1_v5_gn_5_175980 Lactuca sativa HOM05D003877 ORTHO05D004647 8.1e-27 125.9 105 59.0
SEGI_27537 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 1.3e-24 118.6 75 72.0
unitig_8.g4097 Utricularia gibba HOM05D003877 ORTHO05D004647 1.4e-23 115.2 96 56.2
CsaV3_2G012240 Cucumis sativus L. HOM05D003877 ORTHO05D004647 3.2e-23 114.0 85 60.0
Carub.0003s0920 Capsella rubella HOM05D000468 ORTHO05D114682 2.3e-21 107.8 70 80.0
TPR.G5082 Trifolium pratense HOM05D003877 ORTHO05D004647 1.4e-18 98.6 63 66.7
Nn5g28638 Nelumbo nucifera HOM05D003877 ORTHO05D004647 5.3e-18 96.7 71 60.6
CSS0015783 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 3.2e-15 87.4 110 46.4
Nn7g36267 Nelumbo nucifera HOM05D003877 ORTHO05D004647 7.1e-15 86.3 62 62.9
MELO3C018376.2 Cucumis melo HOM05D003877 ORTHO05D004647 3.4e-09 67.4 45 62.2
Manes.15G188901 Manihot esculenta HOM05D003877 ORTHO05D004647 4.5e-09 67.0 48 58.3
MELO3C033083.2 Cucumis melo HOM05D003877 ORTHO05D034944 7.6e-09 66.2 39 76.9
TPR.G30156 Trifolium pratense HOM05D003877 ORTHO05D004647 1.2e-06 58.9 49 53.1
TPR.G5048 Trifolium pratense HOM05D003877 ORTHO05D004647 1.6e-06 58.5 49 53.1


User provided reference genes

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