Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p48500 Brassica napus HOM05D005359 ORTHO05D006431 5.4e-248 860.5 431 100.0
BolC8t52390H Brassica oleracea HOM05D005359 ORTHO05D006431 2.7e-247 858.2 431 99.5
BraA09t41824Z Brassica rapa HOM05D005359 ORTHO05D006431 1.5e-245 852.4 431 98.6
A09p64680 Brassica napus HOM05D005359 ORTHO05D006431 1.9e-245 852.0 431 98.4
Sp1g09480 Schrenkiella parvula HOM05D005359 ORTHO05D006431 4.6e-223 777.7 429 87.9
Thhalv10007703m.g Eutrema salsugineum HOM05D005359 ORTHO05D006431 1.2e-210 736.5 427 84.8
AT1G10780 Arabidopsis thaliana HOM05D005359 ORTHO05D006431 3.9e-206 721.5 419 84.5
AL1G21710 Arabidopsis lyrata HOM05D005359 ORTHO05D006431 8.7e-206 720.3 419 84.0
CARHR011000 Cardamine hirsuta HOM05D005359 ORTHO05D006431 5.0e-201 704.5 419 81.9
Carub.0001s1033 Capsella rubella HOM05D005359 ORTHO05D006431 5.5e-200 701.0 419 81.1
Aa31LG1G4050 Aethionema arabicum HOM05D005359 ORTHO05D006431 1.2e-191 673.3 420 79.3
THA.LOC104819321 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 5.0e-177 624.8 421 74.6
THA.LOC104809588 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 9.4e-168 594.0 420 70.7
Cpa.g.sc113.63 Carica papaya HOM05D005359 ORTHO05D006431 8.8e-166 587.4 420 67.9
Gorai.008G042100 Gossypium raimondii HOM05D005359 ORTHO05D006431 8.3e-164 580.9 420 67.4
Eucgr.I02722 Eucalyptus grandis HOM05D005359 ORTHO05D006431 1.2e-162 577.0 420 66.9
Gohir.D12G040400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 1.2e-162 577.0 420 66.9
Manes.07G015400 Manihot esculenta HOM05D005359 ORTHO05D006431 1.2e-162 577.0 420 66.9
Gohir.A12G031900 Gossypium hirsutum HOM05D005359 ORTHO05D006431 2.7e-162 575.9 420 66.4
COL.COLO4_17869 Corchorus olitorius HOM05D005359 ORTHO05D006431 3.5e-162 575.5 420 66.9
Gohir.D01G169300 Gossypium hirsutum HOM05D005359 ORTHO05D006431 1.0e-161 573.9 420 66.2
Gorai.002G210900 Gossypium raimondii HOM05D005359 ORTHO05D006431 1.0e-161 573.9 420 66.2
Thecc.02G038700 Theobroma cacao HOM05D005359 ORTHO05D006431 8.6e-161 570.9 420 66.7
PGR042G0198 Punica granatum HOM05D005359 ORTHO05D006431 1.2e-159 567.0 420 65.2
Gohir.A01G178400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 1.6e-159 566.6 420 65.5
Prupe.1G568000 Prunus persica HOM05D005359 ORTHO05D006431 2.8e-159 565.8 420 65.5
TWI14G1253 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 2.8e-159 565.8 420 66.4
Ciclev10001293m.g Citrus clementina HOM05D005359 ORTHO05D006431 4.7e-159 565.1 420 66.4
Dinv19364 Davidia involucrata HOM05D005359 ORTHO05D006431 4.7e-159 565.1 420 66.2
Duzib052G1228 Durio zibethinus HOM05D005359 ORTHO05D006431 2.3e-158 562.8 420 65.7
RcHm_v2.0_Chr7g0222501 Rosa chinensis HOM05D005359 ORTHO05D006431 2.3e-158 562.8 420 65.5
arahy.Tifrunner.gnm1.ann1.HK0KDN Arachis hypogaea HOM05D005359 ORTHO05D006431 4.0e-158 562.0 421 65.8
arahy.Tifrunner.gnm1.ann1.8TZ9EP Arachis hypogaea HOM05D005359 ORTHO05D006431 5.2e-158 561.6 421 65.6
MD15G1422700 Malus domestica HOM05D005359 ORTHO05D006431 2.0e-157 559.7 429 63.2
QL08p043348 Quercus lobata HOM05D005359 ORTHO05D006431 2.6e-157 559.3 419 66.3
Sabra01G0162800 Salix brachista HOM05D005359 ORTHO05D006431 4.4e-157 558.5 429 63.6
CiPaw.06G147600 Carya illinoinensis HOM05D005359 ORTHO05D006431 5.7e-157 558.1 420 65.5
Glyma.15G046900 Glycine max HOM05D005359 ORTHO05D006431 7.5e-157 557.8 420 65.2
Potri.003G019400 Populus trichocarpa HOM05D005359 ORTHO05D006431 9.8e-157 557.4 420 65.0
TWI23G0911 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 1.3e-156 557.0 420 64.8
Sabra03G0010900 Salix brachista HOM05D005359 ORTHO05D006431 2.8e-156 555.8 420 64.3
Potri.001G210800 Populus trichocarpa HOM05D005359 ORTHO05D006431 3.7e-156 555.4 420 65.5
Medtr2g007220 Medicago truncatula HOM05D005359 ORTHO05D006431 6.3e-156 554.7 422 63.7
Sed0010360 Sechium edule HOM05D005359 ORTHO05D006431 1.1e-155 553.9 420 65.2
FAN08G1144 Fragaria x ananassa HOM05D005359 ORTHO05D006431 1.4e-155 553.5 420 64.5
FvH4_5g29550 Fragaria vesca HOM05D005359 ORTHO05D006431 2.4e-155 552.7 420 64.5
FAN18G3183 Fragaria x ananassa HOM05D005359 ORTHO05D006431 2.4e-155 552.7 420 64.5
Lj4g0002358 Lotus japonicus HOM05D005359 ORTHO05D006431 3.1e-155 552.4 427 63.2
Lj6g0011599 Lotus japonicus HOM05D005359 ORTHO05D006431 3.1e-155 552.4 420 64.5
Glyma.05G169600 Glycine max HOM05D005359 ORTHO05D006431 4.1e-155 552.0 421 64.4
Cfa005525 Carpinus fangiana HOM05D005359 ORTHO05D006431 7.0e-155 551.2 420 66.2
Dinv24279 Davidia involucrata HOM05D005359 ORTHO05D006431 9.2e-155 550.8 420 64.5
VMungo0540G0616 Vigna mungo HOM05D005359 ORTHO05D006431 9.2e-155 550.8 420 63.8
CsaV3_6G037270 Cucumis sativus L. HOM05D005359 ORTHO05D006431 1.2e-154 550.4 420 65.2
CANSAT11G0924 Cannabis sativa HOM05D005359 ORTHO05D006431 2.0e-154 549.7 420 63.3
CSS0002632 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 2.7e-154 549.3 420 64.3
Haze_01666 Corylus avellana HOM05D005359 ORTHO05D006431 3.5e-154 548.9 420 65.5
Glyma.08G127900 Glycine max HOM05D005359 ORTHO05D006431 5.9e-154 548.1 421 64.4
Glyma.08G185900 Glycine max HOM05D005359 ORTHO05D006431 7.8e-154 547.7 420 64.0
CSS0043414 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 1.0e-153 547.4 420 64.0
ClCG09G014240 Citrullus lanatus HOM05D005359 ORTHO05D006431 1.7e-153 546.6 420 65.0
Phvul.002G250300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 3.9e-153 545.4 420 62.9
Psat2g122240 Pisum sativum HOM05D005359 ORTHO05D006431 3.9e-153 545.4 421 62.5
VMungo0251G3193 Vigna mungo HOM05D005359 ORTHO05D006431 6.6e-153 544.7 420 62.9
FAN13G1157 Fragaria x ananassa HOM05D005359 ORTHO05D006431 1.1e-152 543.9 420 63.3
Lj5A252T45 Lonicera japonica HOM05D005359 ORTHO05D006431 1.9e-152 543.1 420 64.3
Ca_00078_v3 Cicer arietinum L. HOM05D005359 ORTHO05D006431 2.5e-152 542.7 419 63.2
MELO3C014388.2 Cucumis melo HOM05D005359 ORTHO05D006431 3.3e-152 542.3 410 65.6
TPR.G2126 Trifolium pratense HOM05D005359 ORTHO05D006431 3.3e-152 542.3 427 61.8
Rhsim11G0129700 Rhododendron simsii HOM05D005359 ORTHO05D006431 1.2e-151 540.4 420 63.8
vmacro01763 Vaccinium macrocarpon HOM05D005359 ORTHO05D006431 2.1e-151 539.7 420 63.6
CANSAT11G2649 Cannabis sativa HOM05D005359 ORTHO05D006431 4.7e-151 538.5 421 62.7
Oeu008891.1 Olea europaea HOM05D005359 ORTHO05D006431 4.7e-151 538.5 420 64.0
Cc02_g22460 Coffea canephora HOM05D005359 ORTHO05D006431 1.0e-150 537.3 420 61.9
Phvul.006G214300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 1.8e-150 536.6 421 62.2
TAR628G1654 Trochodendron aralioides HOM05D005359 ORTHO05D006431 1.5e-149 533.5 420 62.4
EL10Ac6g14556 Beta vulgaris HOM05D005359 ORTHO05D006431 1.7e-148 530.0 425 61.4
DCAR_013987 Daucus carota HOM05D005359 ORTHO05D006431 2.2e-148 529.6 420 61.9
Lsat_1_v5_gn_5_109981 Lactuca sativa HOM05D005359 ORTHO05D006431 2.9e-148 529.3 421 62.0
Nn5g28206 Nelumbo nucifera HOM05D005359 ORTHO05D006431 8.3e-148 527.7 420 61.7
MSTRG.5231 Avicennia marina HOM05D005359 ORTHO05D006431 1.1e-147 527.3 420 61.4
HanXRQChr10g0289981 Helianthus annuus HOM05D005359 ORTHO05D006431 1.9e-147 526.6 420 61.2
ECA234G2063 Erigeron canadensis HOM05D005359 ORTHO05D006431 2.4e-147 526.2 420 61.2
Lalb_Chr20g0123431 Lupinus albus HOM05D005359 ORTHO05D006431 3.2e-147 525.8 420 60.5
HanXRQChr16g0514561 Helianthus annuus HOM05D005359 ORTHO05D006431 7.0e-147 524.6 420 61.7
AUR62002965 Chenopodium quinoa HOM05D005359 ORTHO05D006431 9.2e-147 524.2 425 60.5
AUR62007773 Chenopodium quinoa HOM05D005359 ORTHO05D006431 1.2e-146 523.9 425 60.7
MD08G1228700 Malus domestica HOM05D005359 ORTHO05D006431 1.2e-146 523.9 405 62.5
TAR376G0200 Trochodendron aralioides HOM05D005359 ORTHO05D006431 2.3e-145 519.6 420 61.2
Hund05788 Selenicereus undatus HOM05D005359 ORTHO05D006431 3.9e-145 518.8 423 61.2
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 6.6e-145 518.1 408 61.8
DCAR_031890 Daucus carota HOM05D005359 ORTHO05D006431 1.5e-144 516.9 407 60.9
HanXRQChr06g0169581 Helianthus annuus HOM05D005359 ORTHO05D006431 1.5e-144 516.9 425 60.5
SalBow6G6401 Salvia bowleyana HOM05D005359 ORTHO05D006431 3.3e-144 515.8 420 59.8
GSVIVG01022967001 Vitis vinifera HOM05D005359 ORTHO05D006431 8.9e-142 507.7 423 60.8
Sc16g0001650 Simmondsia chinensis HOM05D005359 ORTHO05D006431 4.4e-141 505.4 424 60.4
Aqoxy5G02275 Aquilegia oxysepala HOM05D005359 ORTHO05D006431 6.4e-140 501.5 422 59.7
Peaxi162Scf00011g00352 Petunia axillaris HOM05D005359 ORTHO05D006431 6.4e-140 501.5 421 60.8
Migut.N01041 Erythranthe guttata HOM05D005359 ORTHO05D006431 1.4e-139 500.4 420 59.3
Nitab4.5_0007420g0030 Nicotiana tabacum HOM05D005359 ORTHO05D006431 1.9e-139 500.0 421 61.5
CiPaw.05G044000 Carya illinoinensis HOM05D005359 ORTHO05D006431 2.4e-139 499.6 420 60.2
ECA236G4790 Erigeron canadensis HOM05D005359 ORTHO05D006431 1.2e-133 480.7 377 62.6
MBI06_g20718_MAGBIO Magnolia biondii HOM05D005359 ORTHO05D006431 2.0e-133 479.9 420 57.6
ATR0193G009 Amborella trichopoda HOM05D005359 ORTHO05D006431 3.4e-133 479.2 420 57.6
unitig_26.g9020 Utricularia gibba HOM05D005359 ORTHO05D006431 2.9e-132 476.1 420 56.4
Lalb_Chr07g0185731 Lupinus albus HOM05D005359 ORTHO05D006431 1.1e-131 474.2 421 55.6
Nitab4.5_0002245g0060 Nicotiana tabacum HOM05D005359 ORTHO05D006431 2.7e-130 469.5 421 59.4
Sed0018525 Sechium edule HOM05D005359 ORTHO05D006431 6.0e-130 468.4 420 55.2
CAN.G1577.14 Capsicum annuum HOM05D005359 ORTHO05D006431 1.1e-128 464.2 421 56.8
PGSC0003DMG400023758 Solanum tuberosum HOM05D005359 ORTHO05D006431 9.5e-128 461.1 421 57.2
Sopen01g046670 Solanum pennellii HOM05D005359 ORTHO05D006431 5.2e-126 455.3 420 56.9
Os09g0454300 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 1.2e-122 444.1 423 53.0
Ah.03g138120 Amaranthus hybridus HOM05D005359 ORTHO05D006431 8.7e-121 438.0 425 52.5
Zm00001eb176520 Zea mays HOM05D005359 ORTHO05D006431 1.1e-112 411.0 425 50.8
Zm00001eb100430 Zea mays HOM05D005359 ORTHO05D006431 5.6e-112 408.7 405 51.4
Solyc01g104230.4 Solanum lycopersicum HOM05D005359 ORTHO05D006431 8.1e-111 404.8 356 58.4
Zm00001eb037840 Zea mays HOM05D005359 ORTHO05D006431 1.5e-109 400.6 425 49.4
Os08g0469500 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 1.2e-98 364.4 422 46.9
Mapoly0113s0005 Marchantia polymorpha HOM05D005359 ORTHO05D006431 3.9e-97 359.4 407 45.0
Hma1.2p1_0217F.1_g092010 Hydrangea macrophylla HOM05D005359 ORTHO05D006431 8.7e-97 358.2 251 68.1
Thecc.02G038500 Theobroma cacao HOM05D005359 ORTHO05D006431 1.1e-94 351.3 282 59.9
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 8.4e-92 341.7 400 47.2
SMO169G0280 Selaginella moellendorffii HOM05D005359 ORTHO05D006431 6.1e-82 308.9 405 44.0
AagrBONN_evm.TU.Sc2ySwM_117.2184 Anthoceros agrestis HOM05D005359 ORTHO05D006431 1.1e-80 304.7 359 43.5
Oeu033126.1 Olea europaea HOM05D005359 ORTHO05D006431 3.1e-78 296.6 303 54.1
HPP92_010977 Vanilla planifolia HOM05D005359 ORTHO05D006431 3.2e-75 286.6 298 50.0
Nn1g08733 Nelumbo nucifera HOM05D005359 ORTHO05D006431 1.7e-71 274.2 256 52.3
CDE11G1073 Ceratophyllum demersum HOM05D005359 ORTHO05D006431 1.2e-58 231.5 316 38.9
BcaC05g24954 Brassica carinata HOM05D005359 ORTHO05D006431 3.4e-56 223.4 160 73.8
arahy.Tifrunner.gnm1.ann1.3FYK03 Arachis hypogaea HOM05D005359 ORTHO05D006431 3.1e-54 216.9 266 46.2
Atru.chr6.646 Acer truncatum HOM05D005359 ORTHO05D006431 4.0e-49 199.9 134 68.7
Dinv24276 Davidia involucrata HOM05D005359 ORTHO05D006431 5.4e-38 162.9 131 59.5
arahy.Tifrunner.gnm1.ann1.BYQ4G2 Arachis hypogaea HOM05D005359 ORTHO05D006431 1.2e-32 145.2 99 71.7
arahy.Tifrunner.gnm1.ann1.94J17Q Arachis hypogaea HOM05D005359 ORTHO05D006431 4.1e-30 136.7 91 72.5
arahy.Tifrunner.gnm1.ann1.E0G9L5 Arachis hypogaea HOM05D005359 ORTHO05D006431 4.1e-22 110.2 74 70.3
arahy.Tifrunner.gnm1.ann1.B308TG Arachis hypogaea HOM05D005359 ORTHO05D006431 9.2e-22 109.0 71 71.8
arahy.Tifrunner.gnm1.ann1.F717DE Arachis hypogaea HOM05D005359 ORTHO05D006431 3.0e-20 104.0 71 70.4
Oeu056678.1 Olea europaea HOM05D005359 ORTHO05D006431 3.3e-19 100.5 79 59.5
arahy.Tifrunner.gnm1.ann1.HDLM7U Arachis hypogaea HOM05D005359 ORTHO05D006431 4.3e-19 100.1 71 69.0
arahy.Tifrunner.gnm1.ann1.X0Q2J1 Arachis hypogaea HOM05D005359 ORTHO05D006431 4.3e-19 100.1 71 69.0
MSTRG.27843 Avicennia marina HOM05D005359 ORTHO05D006431 1.8e-17 94.7 96 52.1
Sc15g0003870 Simmondsia chinensis HOM05D006588 ORTHO05D008272 8.9e-09 65.9 419 23.2
Hma1.2p1_0388F.1_g142070 Hydrangea macrophylla HOM05D001477 ORTHO05D001182 2.9e-07 60.8 279 25.8
ATR0789G046 Amborella trichopoda HOM05D006588 ORTHO05D008272 3.8e-07 60.5 340 24.1
HanXRQChr03g0060631 Helianthus annuus HOM05D006588 ORTHO05D008272 8.4e-07 59.3 229 27.9
HanXRQChr03g0060651 Helianthus annuus HOM05D006588 ORTHO05D008272 1.9e-06 58.2 246 26.4
HanXRQChr03g0060671 Helianthus annuus HOM05D006588 ORTHO05D008272 1.9e-06 58.2 246 26.4
HanXRQChr03g0060681 Helianthus annuus HOM05D006588 ORTHO05D008272 1.9e-06 58.2 246 26.4
Migut.M00847 Erythranthe guttata HOM05D000051 ORTHO05D000015 3.2e-06 57.4 214 28.5
TWI34G1517 Tripterygium wilfordii HOM05D006588 ORTHO05D008272 3.2e-06 57.4 300 24.3
PGSC0003DMG400037653 Solanum tuberosum HOM05D001396 ORTHO05D000493 4.2e-06 57.0 237 25.3
QL05p074545 Quercus lobata HOM05D000051 ORTHO05D000015 5.4e-06 56.6 247 24.3
RcHm_v2.0_Chr5g0028241 Rosa chinensis HOM05D000051 ORTHO05D000015 5.4e-06 56.6 441 22.9
HanXRQChr03g0060961 Helianthus annuus HOM05D006588 ORTHO05D008272 9.3e-06 55.8 237 26.2


User provided reference genes

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