Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p48360 Brassica napus HOM05D003782 ORTHO05D004361 0.0e+00 1600.9 850 100.0
BolC8t52375H Brassica oleracea HOM05D003782 ORTHO05D004361 0.0e+00 1600.9 850 100.0
BcaC07g41789 Brassica carinata HOM05D003782 ORTHO05D004361 0.0e+00 1528.1 876 94.9
A09p64830 Brassica napus HOM05D003782 ORTHO05D004361 0.0e+00 1490.7 917 88.2
BraA09t41812Z Brassica rapa HOM05D003782 ORTHO05D004361 0.0e+00 1485.7 926 86.8
A06p07760 Brassica napus HOM05D003782 ORTHO05D004361 0.0e+00 1314.7 866 84.2
BraA06t23977Z Brassica rapa HOM05D003782 ORTHO05D004361 0.0e+00 1313.1 866 84.1
C05p09350 Brassica napus HOM05D003782 ORTHO05D004361 0.0e+00 1307.0 867 83.0
CARHR011250 Cardamine hirsuta HOM05D003782 ORTHO05D004361 0.0e+00 1299.6 872 82.7
BolC5t29675H Brassica oleracea HOM05D003782 ORTHO05D004361 0.0e+00 1295.4 895 80.0
Thhalv10006765m.g Eutrema salsugineum HOM05D003782 ORTHO05D004361 0.0e+00 1291.9 875 80.6
AL1G22040 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 0.0e+00 1288.9 875 81.9
Sp1g09750 Schrenkiella parvula HOM05D003782 ORTHO05D004361 0.0e+00 1275.0 873 80.2
AT1G11060 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 0.0e+00 1260.0 875 80.8
Carub.0001s1062 Capsella rubella HOM05D003782 ORTHO05D004361 0.0e+00 1257.3 874 78.7
BcaC05g24980 Brassica carinata HOM05D003782 ORTHO05D004361 0.0e+00 1233.0 805 83.5
Aa31LG1G3850 Aethionema arabicum HOM05D003782 ORTHO05D004361 0.0e+00 1187.2 900 74.4
Sp2g03490 Schrenkiella parvula HOM05D003782 ORTHO05D004361 2.1e-304 1048.9 873 68.2
AL2G15410 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 3.1e-287 991.9 867 66.1
AT1G61030 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 4.0e-287 991.5 865 65.5
Carub.0002s0417 Capsella rubella HOM05D003782 ORTHO05D004361 8.6e-282 973.8 860 65.8
CARHR052160 Cardamine hirsuta HOM05D003782 ORTHO05D004361 3.0e-274 948.7 873 64.7
Aa31LG2G9560 Aethionema arabicum HOM05D003782 ORTHO05D004361 4.2e-252 875.2 861 61.2
Potri.011G049300 Populus trichocarpa HOM05D003782 ORTHO05D004361 8.5e-213 744.6 897 50.2
Manes.17G043000 Manihot esculenta HOM05D003782 ORTHO05D004361 1.2e-209 734.2 905 50.4
Potri.004G039900 Populus trichocarpa HOM05D003782 ORTHO05D004361 3.7e-208 729.2 905 51.7
Sabra11G0033700 Salix brachista HOM05D003782 ORTHO05D004361 3.8e-205 719.2 911 48.3
Manes.16G025200 Manihot esculenta HOM05D003782 ORTHO05D004361 1.2e-203 714.1 913 49.0
Cfa000411 Carpinus fangiana HOM05D003782 ORTHO05D004361 1.4e-202 710.7 900 49.8
Atru.chr10.1947 Acer truncatum HOM05D003782 ORTHO05D004361 8.8e-202 708.0 943 48.1
QL05p039400 Quercus lobata HOM05D003782 ORTHO05D004361 3.7e-200 702.6 905 49.7
Thecc.06G191300 Theobroma cacao HOM05D003782 ORTHO05D004361 4.5e-198 695.7 914 49.0
TWI38G1173 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 6.6e-197 691.8 898 49.6
Actinidia05612 Actinidia chinensis HOM05D003782 ORTHO05D004361 8.6e-197 691.4 898 48.6
CiPaw.09G056900 Carya illinoinensis HOM05D003782 ORTHO05D004361 1.1e-196 691.0 914 48.7
Haze_06504 Corylus avellana HOM05D003782 ORTHO05D004361 2.5e-196 689.9 890 49.1
Duzib160G0524 Durio zibethinus HOM05D003782 ORTHO05D004361 2.8e-195 686.4 901 48.8
Phvul.002G226800 Phaseolus vulgaris HOM05D003782 ORTHO05D004361 3.6e-195 686.0 881 49.3
Hma1.2p1_0881F.1_g231940 Hydrangea macrophylla HOM05D003782 ORTHO05D004361 4.0e-194 682.6 913 47.9
Glyma.13G181800 Glycine max HOM05D003782 ORTHO05D004361 6.8e-194 681.8 900 49.9
Glyma.07G194500 Glycine max HOM05D003782 ORTHO05D004361 4.4e-193 679.1 888 49.4
GSVIVG01006449001 Vitis vinifera HOM05D003782 ORTHO05D004361 5.7e-193 678.7 916 46.8
Gohir.D06G130600 Gossypium hirsutum HOM05D003782 ORTHO05D004361 7.5e-193 678.3 917 46.9
Ciclev10014178m.g Citrus clementina HOM05D003782 ORTHO05D004361 3.2e-191 672.9 952 46.2
Dinv07533 Davidia involucrata HOM05D003782 ORTHO05D004361 5.4e-191 672.2 902 48.7
Gohir.A06G125300 Gossypium hirsutum HOM05D003782 ORTHO05D004361 9.2e-191 671.4 905 47.0
CiPaw.10G046700 Carya illinoinensis HOM05D003782 ORTHO05D004361 1.2e-190 671.0 794 52.1
Lj4g0027811 Lotus japonicus HOM05D003782 ORTHO05D004361 1.7e-189 667.2 937 46.5
Sed0005800 Sechium edule HOM05D003782 ORTHO05D004361 1.7e-189 667.2 940 46.6
VMungo0251G3691 Vigna mungo HOM05D003782 ORTHO05D004361 3.3e-188 662.9 875 49.0
arahy.Tifrunner.gnm1.ann1.1A97AW Arachis hypogaea HOM05D003782 ORTHO05D004361 2.8e-187 659.8 901 47.9
Lalb_Chr05g0218361 Lupinus albus HOM05D003782 ORTHO05D004361 2.8e-187 659.8 891 48.0
arahy.Tifrunner.gnm1.ann1.2GZF7Z Arachis hypogaea HOM05D003782 ORTHO05D004361 1.0e-186 657.9 900 47.9
CSS0005863 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.0e-186 657.9 903 46.4
CsaV3_1G012120 Cucumis sativus L. HOM05D003782 ORTHO05D004361 1.8e-186 657.1 908 47.9
CANSAT35G1194 Cannabis sativa HOM05D003782 ORTHO05D004361 6.8e-186 655.2 908 47.6
Gohir.A06G209800 Gossypium hirsutum HOM05D003782 ORTHO05D004361 1.2e-185 654.4 914 47.0
Peaxi162Scf00379g00065 Petunia axillaris HOM05D003782 ORTHO05D004361 2.6e-185 653.3 803 50.8
Medtr4g089015 Medicago truncatula HOM05D003782 ORTHO05D004361 2.9e-184 649.8 978 44.8
Lalb_Chr09g0327561 Lupinus albus HOM05D003782 ORTHO05D004361 3.7e-184 649.4 885 48.1
Nitab4.5_0011233g0010 Nicotiana tabacum HOM05D003782 ORTHO05D004361 1.4e-183 647.5 807 50.4
DCAR_008048 Daucus carota HOM05D003782 ORTHO05D004361 5.4e-183 645.6 807 48.8
RcHm_v2.0_Chr5g0007891 Rosa chinensis HOM05D003782 ORTHO05D004361 5.4e-183 645.6 918 47.5
ClCG03G005890 Citrullus lanatus HOM05D003782 ORTHO05D004361 1.2e-182 644.4 929 46.3
Sopen02g023410 Solanum pennellii HOM05D003782 ORTHO05D004361 3.5e-182 642.9 784 50.4
CAN.G1627.12 Capsicum annuum HOM05D003782 ORTHO05D004361 6.0e-182 642.1 787 50.4
PGR042G3934 Punica granatum HOM05D003782 ORTHO05D004361 7.8e-182 641.7 892 46.4
MD05G1316600 Malus domestica HOM05D003782 ORTHO05D004361 1.3e-181 641.0 930 46.0
Gorai.010G255000 Gossypium raimondii HOM05D003782 ORTHO05D004361 1.7e-181 640.6 914 46.4
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 2.3e-181 640.2 803 48.9
Cc02_g13030 Coffea canephora HOM05D003782 ORTHO05D004361 3.0e-181 639.8 891 44.9
Migut.H01508 Erythranthe guttata HOM05D003782 ORTHO05D004361 3.9e-181 639.4 770 48.8
Prupe.4G043300 Prunus persica HOM05D003782 ORTHO05D004361 3.9e-181 639.4 927 45.8
Gohir.D06G211200 Gossypium hirsutum HOM05D003782 ORTHO05D004361 6.6e-181 638.6 914 46.1
Solyc02g078560.4 Solanum lycopersicum HOM05D003782 ORTHO05D004361 8.6e-181 638.3 802 48.9
vmacro03847 Vaccinium macrocarpon HOM05D003782 ORTHO05D004361 8.6e-181 638.3 991 44.0
TPR.G12054 Trifolium pratense HOM05D003782 ORTHO05D004361 1.9e-180 637.1 977 44.8
FAN11G2511 Fragaria x ananassa HOM05D003782 ORTHO05D004361 3.3e-180 636.3 961 45.8
FvH4_3g04800 Fragaria vesca HOM05D003782 ORTHO05D004361 1.2e-179 634.4 957 45.6
Psat7g113440 Pisum sativum HOM05D003782 ORTHO05D004361 1.8e-178 630.6 998 44.5
FAN16G0824 Fragaria x ananassa HOM05D003782 ORTHO05D004361 4.0e-178 629.4 956 44.2
MD10G1297100 Malus domestica HOM05D003782 ORTHO05D004361 4.0e-178 629.4 930 45.9
Sc05g0007840 Simmondsia chinensis HOM05D003782 ORTHO05D004361 2.0e-177 627.1 967 44.2
COL.COLO4_31507 Corchorus olitorius HOM05D003782 ORTHO05D004361 2.6e-177 626.7 1034 43.2
FAN21G1192 Fragaria x ananassa HOM05D003782 ORTHO05D004361 3.4e-177 626.3 956 45.4
Eucgr.E03352 Eucalyptus grandis HOM05D003782 ORTHO05D004361 5.8e-177 625.5 795 48.7
FAN25G2149 Fragaria x ananassa HOM05D003782 ORTHO05D004361 5.8e-177 625.5 956 44.5
Ca_18527_v3 Cicer arietinum L. HOM05D003782 ORTHO05D004361 7.5e-177 625.2 872 46.4
Dinv40534 Davidia involucrata HOM05D003782 ORTHO05D004361 2.2e-176 623.6 737 50.9
MSTRG.14684 Avicennia marina HOM05D003782 ORTHO05D004361 3.7e-176 622.9 779 47.8
CSS0007425 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 8.3e-176 621.7 881 45.5
Gorai.010G152400 Gossypium raimondii HOM05D003782 ORTHO05D004361 8.3e-176 621.7 913 44.4
Aqoxy4G01073 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 1.1e-175 621.3 844 46.2
MBI17_g03751_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 1.2e-174 617.8 918 44.6
HanXRQChr04g0124181 Helianthus annuus HOM05D003782 ORTHO05D004361 1.0e-173 614.8 896 44.6
Lsat_1_v5_gn_7_19080 Lactuca sativa HOM05D003782 ORTHO05D004361 3.6e-171 606.3 900 45.4
Lj1C1208G1 Lonicera japonica HOM05D003782 ORTHO05D004361 4.9e-168 595.9 889 46.8
EL10Ac8g20337 Beta vulgaris HOM05D003782 ORTHO05D004361 1.1e-167 594.7 813 47.6
HanXRQChr08g0209481 Helianthus annuus HOM05D003782 ORTHO05D004361 1.4e-167 594.3 821 46.0
arahy.Tifrunner.gnm1.ann1.HPML60 Arachis hypogaea HOM05D003782 ORTHO05D004361 6.0e-166 589.0 892 43.6
MELO3C002586.2 Cucumis melo HOM05D003782 ORTHO05D004361 7.8e-166 588.6 976 43.3
Hund23698 Selenicereus undatus HOM05D003782 ORTHO05D004361 1.7e-165 587.4 870 44.6
SGA_v2.0_scaffold49G18282 Striga asiatica HOM05D003782 ORTHO05D004361 5.1e-165 585.9 775 45.4
Lj6g0013812 Lotus japonicus HOM05D003782 ORTHO05D004361 6.6e-165 585.5 775 46.7
arahy.Tifrunner.gnm1.ann1.AS4EHM Arachis hypogaea HOM05D003782 ORTHO05D004361 1.5e-164 584.3 888 44.0
AUR62016973 Chenopodium quinoa HOM05D003782 ORTHO05D004361 1.5e-164 584.3 808 45.0
AUR62014785 Chenopodium quinoa HOM05D003782 ORTHO05D004361 5.6e-164 582.4 854 43.7
Nitab4.5_0003668g0120 Nicotiana tabacum HOM05D003782 ORTHO05D004361 7.3e-164 582.0 824 47.2
RhsimUnG0044200 Rhododendron simsii HOM05D003782 ORTHO05D004361 2.1e-163 580.5 978 41.3
CDE02G2556 Ceratophyllum demersum HOM05D003782 ORTHO05D004361 2.2e-160 570.5 871 43.9
Ah.14g089260 Amaranthus hybridus HOM05D003782 ORTHO05D004361 8.4e-160 568.5 928 42.3
Sed0026382 Sechium edule HOM05D003782 ORTHO05D004361 2.4e-159 567.0 881 43.5
SalBow7G0940 Salvia bowleyana HOM05D003782 ORTHO05D004361 1.2e-158 564.7 821 44.3
SalBow7G0271 Salvia bowleyana HOM05D003782 ORTHO05D004361 3.5e-158 563.1 821 44.2
SalBow8G2382 Salvia bowleyana HOM05D003782 ORTHO05D004361 5.6e-156 555.8 810 44.7
Oeu014694.1 Olea europaea HOM05D003782 ORTHO05D004361 4.0e-154 549.7 811 43.5
Sabra04G0024600 Salix brachista HOM05D003782 ORTHO05D004361 1.2e-153 548.1 777 45.4
PSO210G1870 Papaver somniferum HOM05D003782 ORTHO05D004361 1.1e-151 541.6 995 39.1
ATR0680G033 Amborella trichopoda HOM05D003782 ORTHO05D004361 2.4e-151 540.4 795 43.6
PSO832G0898 Papaver somniferum HOM05D003782 ORTHO05D004361 3.9e-149 533.1 871 41.4
HPP92_014533 Vanilla planifolia HOM05D003782 ORTHO05D004361 2.8e-147 526.9 890 40.3
Lalb_Chr20g0122011 Lupinus albus HOM05D003782 ORTHO05D004361 3.6e-147 526.6 762 45.9
Os10g0497000 Oryza sativa ssp. japonica HOM05D003782 ORTHO05D004361 1.9e-140 504.2 819 41.0
Ah.09g235740 Amaranthus hybridus HOM05D003782 ORTHO05D004361 1.0e-136 491.9 833 41.1
Zm00001eb220930 Zea mays HOM05D003782 ORTHO05D004361 1.3e-136 491.5 880 39.8
Duzib192G0241 Durio zibethinus HOM05D003782 ORTHO05D004361 1.9e-124 451.1 917 38.6
Duzib235G1248 Durio zibethinus HOM05D003782 ORTHO05D004361 1.6e-123 448.0 917 39.0
Migut.M01185 Erythranthe guttata HOM05D003782 ORTHO05D004361 7.7e-121 439.1 781 39.3
unitig_26.g9369 Utricularia gibba HOM05D003782 ORTHO05D004361 1.0e-117 428.7 787 38.9
Mapoly0014s0099 Marchantia polymorpha HOM05D003782 ORTHO05D004361 2.0e-108 397.9 884 34.4
Pp3c9_20340 Physcomitrium patens HOM05D003782 ORTHO05D004361 1.6e-105 388.3 811 36.4
Pp3c9_20349 Physcomitrium patens HOM05D003782 ORTHO05D004361 1.6e-105 388.3 811 36.4
Zm00001eb044640 Zea mays HOM05D003782 ORTHO05D004361 1.0e-93 349.0 665 37.7
SMO169G0190 Selaginella moellendorffii HOM05D003782 ORTHO05D004361 1.4e-93 348.6 777 35.0
Cpa.g.sc27.74 Carica papaya HOM05D003782 ORTHO05D004361 2.6e-92 344.4 368 53.3
ECA236G4595 Erigeron canadensis HOM05D003782 ORTHO05D004361 1.2e-89 335.5 541 44.2
Aqoxy6G00197 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 2.0e-76 291.6 332 52.4
FAN07G0886 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.1e-74 285.8 285 53.3
Lj6g0001672 Lotus japonicus HOM05D003782 ORTHO05D004361 3.3e-63 247.7 390 44.4
BcaC05g24978 Brassica carinata HOM05D003782 ORTHO05D004361 4.3e-63 247.3 180 78.3
CBR_g19729 Chara braunii HOM05D003782 ORTHO05D004361 1.6e-62 245.4 953 27.0
SEGI_34470 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 9.5e-55 219.5 251 51.8
SHI01818 Sapria himalayana HOM05D003782 ORTHO05D004361 2.8e-54 218.0 470 34.7
Oeu043706.1 Olea europaea HOM05D003782 ORTHO05D004361 3.8e-51 207.6 397 39.8
Lj6g0027699 Lotus japonicus HOM05D003782 ORTHO05D004361 1.2e-49 202.6 259 42.9
CSS0036804 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 2.9e-43 181.4 384 38.0
Sabra04G0024500 Salix brachista HOM05D003782 ORTHO05D004361 1.3e-38 166.0 137 67.2
Cpa.g.sc27.75 Carica papaya HOM05D003782 ORTHO05D004361 4.9e-35 154.1 486 29.8
SEGI_13110 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 1.9e-31 142.1 201 42.3
ECA236G3594 Erigeron canadensis HOM05D003782 ORTHO05D004361 5.3e-29 134.0 132 56.1
FAN28G2813 Fragaria x ananassa HOM05D003782 ORTHO05D004361 3.4e-28 131.3 92 71.7
CARHR034020 Cardamine hirsuta HOM05D003782 ORTHO05D004361 3.8e-27 127.9 92 77.2
Zm00001eb006190 Zea mays HOM05D003782 ORTHO05D004361 1.1e-26 126.3 156 43.6
TWI12G0412 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 1.6e-25 122.5 178 47.2
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 3.5e-25 121.3 111 56.8
arahy.Tifrunner.gnm1.ann1.M5G8HU Arachis hypogaea HOM05D003782 ORTHO05D004361 1.4e-21 109.4 86 66.3
TWI12G0828 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 6.9e-21 107.1 125 52.8
Zm00001eb432110 Zea mays HOM05D003782 ORTHO05D004361 3.2e-18 98.2 89 59.6
arahy.Tifrunner.gnm1.ann1.S76ADD Arachis hypogaea HOM05D001687 ORTHO05D001608 9.3e-18 96.7 79 64.6
VMungo0331G2027 Vigna mungo HOM05D003782 ORTHO05D004361 7.9e-17 93.6 70 67.1
Zm00001eb179180 Zea mays HOM05D003782 ORTHO05D004361 1.3e-16 92.8 89 57.3
MD09G1213100 Malus domestica HOM05D003782 ORTHO05D004361 5.1e-16 90.9 71 59.2
arahy.Tifrunner.gnm1.ann1.IMK82Y Arachis hypogaea HOM05D003782 ORTHO05D004361 6.7e-16 90.5 71 66.2
Zm00001eb335960 Zea mays HOM05D003782 ORTHO05D004361 6.7e-16 90.5 118 42.4
VMungo0251G1485 Vigna mungo HOM05D003782 ORTHO05D004361 8.7e-16 90.1 64 70.3
QL05p013418 Quercus lobata HOM05D003782 ORTHO05D004361 8.2e-14 83.6 57 75.4
arahy.Tifrunner.gnm1.ann1.R5EEB5 Arachis hypogaea HOM05D003782 ORTHO05D004361 2.4e-13 82.0 106 43.4
SHI01816 Sapria himalayana HOM05D005377 ORTHO05D003034 2.4e-13 82.0 84 56.0
CSS0006007 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 4.5e-12 77.8 63 71.4
arahy.Tifrunner.gnm1.ann1.IG0W9M Arachis hypogaea HOM05D003782 ORTHO05D004361 1.0e-11 76.6 114 40.4
Nn1g04009 Nelumbo nucifera HOM05D003782 ORTHO05D004361 1.7e-11 75.9 92 50.0
Zm00001eb208870 Zea mays HOM05D000229 ORTHO05D004361 2.1e-09 68.9 126 39.7
Glyma.04G160500 Glycine max HOM05D003782 ORTHO05D004361 6.1e-09 67.4 87 41.4
Zm00001eb174580 Zea mays HOM05D003782 ORTHO05D004361 6.7e-08 63.9 57 50.9
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 1.1e-07 63.2 90 46.7
TAR626G0244 Trochodendron aralioides HOM05D003782 ORTHO05D004361 1.1e-07 63.2 70 47.1
Zm00001eb032810 Zea mays HOM05D003782 ORTHO05D004361 1.1e-07 63.2 60 56.7
ATR0561G103 Amborella trichopoda HOM05D003782 ORTHO05D004361 2.2e-06 58.9 124 33.1
MBI19_g13594_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 3.7e-06 58.2 42 57.1


User provided reference genes

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