Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p47960 Brassica napus HOM05D004937 ORTHO05D006414 0.0e+00 1087.4 590 100.0
BolC8t52333H Brassica oleracea HOM05D004937 ORTHO05D006414 0.0e+00 1084.3 590 99.5
BcaC07g41758 Brassica carinata HOM05D004937 ORTHO05D006414 8.5e-236 820.5 433 98.6
A09p64340 Brassica napus HOM05D004937 ORTHO05D007797 1.4e-222 776.5 430 93.5
BraA09t41776Z Brassica rapa HOM05D004937 ORTHO05D006414 5.0e-220 768.1 420 93.8
BcaB08g37429 Brassica carinata HOM05D004937 ORTHO05D006414 5.2e-217 758.1 441 89.8
Thhalv10006713m.g Eutrema salsugineum HOM05D004937 ORTHO05D000904 9.5e-203 710.7 500 78.0
Sp1g10430 Schrenkiella parvula HOM05D004937 ORTHO05D006414 2.0e-197 693.0 449 82.9
Carub.0001s1147 Capsella rubella HOM05D004937 ORTHO05D006414 1.5e-187 660.2 434 80.4
CARHR012140 Cardamine hirsuta HOM05D004937 ORTHO05D006414 1.9e-187 659.8 453 76.4
AT1G11800 Arabidopsis thaliana HOM05D004937 ORTHO05D006414 2.1e-186 656.4 450 77.8
AL1G22990 Arabidopsis lyrata HOM05D004937 ORTHO05D006414 2.9e-183 646.0 435 78.4
Aa31LG1G2970 Aethionema arabicum HOM05D004937 ORTHO05D006414 7.1e-166 588.2 431 70.5
THA.LOC104809500 Tarenaya hassleriana HOM05D004937 ORTHO05D006414 1.0e-143 514.6 418 62.2
Haze_06813 Corylus avellana HOM05D004937 ORTHO05D006414 3.7e-138 496.1 413 60.5
COL.COLO4_31792 Corchorus olitorius HOM05D004937 ORTHO05D006414 8.2e-138 495.0 416 63.0
Eucgr.D01342 Eucalyptus grandis HOM05D004937 ORTHO05D006414 1.8e-137 493.8 419 59.9
Thecc.06G222700 Theobroma cacao HOM05D004937 ORTHO05D006414 3.1e-137 493.0 417 63.1
Ciclev10014440m.g Citrus clementina HOM05D004937 ORTHO05D006414 4.1e-137 492.7 483 57.8
QL05p072835 Quercus lobata HOM05D004937 ORTHO05D006414 1.2e-136 491.1 430 60.9
Cpa.g.sc152.26 Carica papaya HOM05D004937 ORTHO05D006414 1.5e-136 490.7 428 60.0
CiPaw.09G093200 Carya illinoinensis HOM05D004937 ORTHO05D006414 1.6e-133 480.7 412 58.5
Lj1A1232T94 Lonicera japonica HOM05D004937 ORTHO05D006414 1.6e-133 480.7 425 59.5
GSVIVG01012711001 Vitis vinifera HOM05D004937 ORTHO05D000904 4.6e-133 479.2 510 53.1
Potri.004G010400 Populus trichocarpa HOM05D004937 ORTHO05D006414 2.2e-130 470.3 475 54.7
MD10G1323300 Malus domestica HOM05D004937 ORTHO05D006414 1.4e-129 467.6 455 54.7
TWI63G0901 Tripterygium wilfordii HOM05D004937 ORTHO05D006414 1.4e-129 467.6 441 58.3
MELO3C002448.2 Cucumis melo HOM05D004937 ORTHO05D006414 1.8e-129 467.2 484 53.5
Glyma.07G261700 Glycine max HOM05D004937 ORTHO05D006414 3.1e-129 466.5 417 59.2
Glyma.17G012400 Glycine max HOM05D004937 ORTHO05D006414 3.1e-129 466.5 412 59.0
arahy.Tifrunner.gnm1.ann1.L1792D Arachis hypogaea HOM05D004937 ORTHO05D006414 5.3e-129 465.7 463 54.9
VMungo1215G2760 Vigna mungo HOM05D004937 ORTHO05D006414 9.1e-129 464.9 409 60.6
CANSAT56G3877 Cannabis sativa HOM05D004937 ORTHO05D006414 1.2e-128 464.5 434 58.3
Sabra04G0005400 Salix brachista HOM05D004937 ORTHO05D006414 1.2e-128 464.5 496 52.6
Phvul.003G080000 Phaseolus vulgaris HOM05D004937 ORTHO05D006414 3.4e-128 463.0 417 58.5
Prupe.4G019000 Prunus persica HOM05D004937 ORTHO05D006414 4.5e-128 462.6 442 55.7
Lj4g0022599 Lotus japonicus HOM05D004937 ORTHO05D006414 7.7e-128 461.8 452 53.8
CsaV3_1G010670 Cucumis sativus L. HOM05D004937 ORTHO05D006414 1.3e-127 461.1 426 58.0
Manes.16G005800 Manihot esculenta HOM05D004937 ORTHO05D006414 2.9e-127 459.9 440 55.9
Sed0026378 Sechium edule HOM05D004937 ORTHO05D006414 1.9e-126 457.2 409 58.4
Gohir.D06G214000 Gossypium hirsutum HOM05D004937 ORTHO05D006414 2.5e-126 456.8 413 59.6
Gorai.010G252100 Gossypium raimondii HOM05D004937 ORTHO05D006414 2.5e-126 456.8 413 59.6
Nn1g07169 Nelumbo nucifera HOM05D004937 ORTHO05D006414 9.4e-126 454.9 416 57.0
vmacro15793 Vaccinium macrocarpon HOM05D004937 ORTHO05D006414 2.1e-125 453.8 424 56.8
Gohir.A06G207300 Gossypium hirsutum HOM05D004937 ORTHO05D006414 3.6e-125 453.0 413 58.8
PGR042G1615 Punica granatum HOM05D004937 ORTHO05D006414 6.7e-124 448.7 434 56.9
Rhsim02G0106300 Rhododendron simsii HOM05D004937 ORTHO05D006414 2.0e-123 447.2 428 55.1
DCAR_024931 Daucus carota HOM05D004937 ORTHO05D006414 7.4e-123 445.3 429 55.5
arahy.Tifrunner.gnm1.ann1.VWCB5J Arachis hypogaea HOM05D004937 ORTHO05D006414 2.2e-122 443.7 465 53.8
Lalb_Chr12g0196051 Lupinus albus HOM05D004937 ORTHO05D006414 1.8e-121 440.7 442 55.4
PSO541G5924 Papaver somniferum HOM05D004937 ORTHO05D006414 3.4e-120 436.4 438 54.8
Cc09_g01540 Coffea canephora HOM05D004937 ORTHO05D000904 5.0e-119 432.6 532 47.4
CSS0033735 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 8.5e-119 431.8 419 56.3
PSO675G7903 Papaver somniferum HOM05D004937 ORTHO05D006414 8.5e-119 431.8 433 55.4
FvH4_3g01860 Fragaria vesca HOM05D004937 ORTHO05D006414 1.1e-118 431.4 477 50.9
RcHm_v2.0_Chr5g0002731 Rosa chinensis HOM05D004937 ORTHO05D006414 1.1e-118 431.4 478 49.6
PSO675G1521 Papaver somniferum HOM05D004937 ORTHO05D006414 3.2e-118 429.9 433 54.5
FAN21G0664 Fragaria x ananassa HOM05D004937 ORTHO05D006414 5.5e-118 429.1 477 50.9
Medtr4g132300 Medicago truncatula HOM05D004937 ORTHO05D006414 9.4e-118 428.3 447 52.6
Peaxi162Scf00394g00019 Petunia axillaris HOM05D004937 ORTHO05D006414 9.4e-118 428.3 444 54.5
TAR624G0274 Trochodendron aralioides HOM05D004937 ORTHO05D006414 9.4e-118 428.3 417 55.6
Nitab4.5_0011734g0010 Nicotiana tabacum HOM05D004937 ORTHO05D006414 7.9e-117 425.2 460 52.2
PSO541G2704 Papaver somniferum HOM05D004937 ORTHO05D006414 1.8e-116 424.1 433 54.3
Peaxi162Scf00307g01425 Petunia axillaris HOM05D004937 ORTHO05D006414 1.1e-115 421.4 444 53.8
EL10Ac8g20076 Beta vulgaris HOM05D004937 ORTHO05D006414 5.7e-115 419.1 598 45.2
Nitab4.5_0000005g0300 Nicotiana tabacum HOM05D004937 ORTHO05D006414 5.7e-115 419.1 465 51.4
PGSC0003DMG400019871 Solanum tuberosum HOM05D004937 ORTHO05D006414 7.4e-115 418.7 459 52.9
ECA236G0630 Erigeron canadensis HOM05D004937 ORTHO05D006414 1.7e-114 417.5 432 56.0
Lsat_1_v5_gn_7_16360 Lactuca sativa HOM05D004937 ORTHO05D006414 1.1e-113 414.8 439 52.8
Sopen02g011270 Solanum pennellii HOM05D004937 ORTHO05D006414 1.4e-113 414.5 461 51.8
Solyc02g032870.4 Solanum lycopersicum HOM05D004937 ORTHO05D006414 4.1e-113 412.9 459 50.5
Migut.M01330 Erythranthe guttata HOM05D004937 ORTHO05D000904 5.3e-113 412.5 471 49.5
HanXRQChr15g0470651 Helianthus annuus HOM05D004937 ORTHO05D006414 9.1e-113 411.8 458 50.7
unitig_748.g7590 Utricularia gibba HOM05D004937 ORTHO05D006414 5.9e-112 409.1 421 52.0
HPP92_001597 Vanilla planifolia HOM05D004937 ORTHO05D006414 5.9e-112 409.1 431 52.0
Aqoxy1G02086 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 1.0e-111 408.3 494 47.2
Sc24g0000210 Simmondsia chinensis HOM05D004937 ORTHO05D006414 5.0e-111 406.0 464 47.0
HPP92_001591 Vanilla planifolia HOM05D004937 ORTHO05D006414 5.0e-111 406.0 435 51.7
DCAR_028195 Daucus carota HOM05D004937 ORTHO05D006414 8.5e-111 405.2 432 51.2
Hund23457 Selenicereus undatus HOM05D004937 ORTHO05D006414 1.4e-108 397.9 578 42.9
AUR62021933 Chenopodium quinoa HOM05D004937 ORTHO05D006414 1.2e-107 394.8 572 45.5
MSTRG.15996 Avicennia marina HOM05D004937 ORTHO05D006414 1.5e-107 394.4 601 43.4
SalBow8G2768 Salvia bowleyana HOM05D004937 ORTHO05D006414 4.4e-107 392.9 460 47.6
Psat4g006200 Pisum sativum HOM05D004937 ORTHO05D006414 2.8e-106 390.2 304 60.5
Ca_21076_v3 Cicer arietinum L. HOM05D004937 ORTHO05D006414 1.7e-103 380.9 313 58.1
TPR.G22185 Trifolium pratense HOM05D004937 ORTHO05D006414 6.5e-103 379.0 281 63.0
Hma1.2p1_3370F.1_g335650 Hydrangea macrophylla HOM05D004937 ORTHO05D006414 2.1e-101 374.0 420 51.0
Os12g0414900 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 6.8e-100 369.0 443 47.2
AUR62012723 Chenopodium quinoa HOM05D004937 ORTHO05D006414 2.0e-96 357.5 295 59.0
HanXRQChr05g0129391 Helianthus annuus HOM05D004937 ORTHO05D006414 5.0e-95 352.8 268 63.4
SEGI_33731 Sequoiadendron giganteum HOM05D004937 ORTHO05D006414 6.5e-95 352.4 271 59.0
CDE02G2441 Ceratophyllum demersum HOM05D004937 ORTHO05D006414 1.1e-94 351.7 427 47.8
Zm00001eb043220 Zea mays HOM05D004937 ORTHO05D006414 3.2e-94 350.1 265 61.5
QL05p072858 Quercus lobata HOM05D004937 ORTHO05D006414 1.6e-93 347.8 266 63.5
ATR0794G089 Amborella trichopoda HOM05D004937 ORTHO05D006414 3.6e-93 346.7 267 57.7
SHI02217 Sapria himalayana HOM05D004937 ORTHO05D006414 4.7e-93 346.3 513 41.5
Haze_06812 Corylus avellana HOM05D004937 ORTHO05D006414 3.0e-92 343.6 274 60.2
PSO017G1772 Papaver somniferum HOM05D004937 ORTHO05D006414 8.9e-92 342.0 278 59.4
BcaB08g37428 Brassica carinata HOM05D004937 ORTHO05D006414 2.8e-90 337.0 220 83.2
Ah.14g087960 Amaranthus hybridus HOM05D004937 ORTHO05D006414 4.1e-89 333.2 525 41.0
Pp3c20_16850 Physcomitrium patens HOM05D004937 ORTHO05D006414 9.2e-89 332.0 264 58.0
Potri.004G010900 Populus trichocarpa HOM05D004937 ORTHO05D006414 2.0e-88 330.9 275 58.5
Dinv20060 Davidia involucrata HOM05D004937 ORTHO05D006414 2.7e-88 330.5 279 58.4
Mapoly0028s0073 Marchantia polymorpha HOM05D004937 ORTHO05D006414 6.6e-87 325.9 345 47.8
QL05p072840 Quercus lobata HOM05D004937 ORTHO05D006414 2.1e-85 320.9 268 58.2
Dinv13907 Davidia involucrata HOM05D004937 ORTHO05D006414 8.0e-85 318.9 266 54.5
Sed0013617 Sechium edule HOM05D004937 ORTHO05D006414 8.9e-84 315.5 229 62.4
SMO361G0593 Selaginella moellendorffii HOM05D004937 ORTHO05D006414 2.6e-83 313.9 270 55.2
AagrBONN_evm.TU.Sc2ySwM_368.2060 Anthoceros agrestis HOM05D004937 ORTHO05D006414 2.3e-79 300.8 247 55.9
CBR_g38366 Chara braunii HOM05D004937 ORTHO05D006414 6.6e-79 299.3 316 47.8
Migut.M01331 Erythranthe guttata HOM05D004937 ORTHO05D006414 4.7e-77 293.1 269 53.2
BcaB08g37427 Brassica carinata HOM05D004937 ORTHO05D006414 1.1e-76 292.0 178 81.5
ClCG03G004640 Citrullus lanatus HOM05D004937 ORTHO05D006414 8.3e-74 282.3 193 65.8
Aqoxy4G00762 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 2.5e-70 270.8 272 50.0
Aqoxy3G03726 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 3.3e-70 270.4 279 48.7
BcaB08g37425 Brassica carinata HOM05D004937 ORTHO05D006414 5.8e-67 259.6 137 90.5
HPP92_014181 Vanilla planifolia HOM05D004937 ORTHO05D006414 9.9e-67 258.8 300 47.0
CSS0005056 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 1.1e-65 255.4 173 66.5
Zm00001eb048580 Zea mays HOM05D004937 ORTHO05D006414 9.2e-65 252.3 185 61.6
Aqoxy5G03390 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 9.6e-54 215.7 220 47.7
CSS0029720 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 3.8e-50 203.8 273 42.5
Cre06.g305050 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 3.8e-50 203.8 291 40.5
Dinv13906 Davidia involucrata HOM05D004937 ORTHO05D006414 4.9e-50 203.4 266 41.4
ClCG03G004650 Citrullus lanatus HOM05D000020 ORTHO05D000904 2.7e-48 197.6 237 54.4
QL05p072848 Quercus lobata HOM05D004937 ORTHO05D006414 1.1e-46 192.2 134 65.7
CSS0048087 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 6.2e-45 186.4 273 39.9
Mapoly0074s0008 Marchantia polymorpha HOM05D004937 ORTHO05D006414 4.9e-42 176.8 253 42.3
MCO11G820 Micromonas commoda HOM05D004937 ORTHO05D006414 4.6e-40 170.2 297 37.4
Psat6g178560 Pisum sativum HOM05D004937 ORTHO05D006414 6.7e-39 166.4 137 58.4
Dinv13904 Davidia involucrata HOM05D004937 ORTHO05D006414 1.9e-38 164.9 210 49.5
PRCOL_00004553 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 9.6e-38 162.5 290 35.9
Dinv13905 Davidia involucrata HOM05D004937 ORTHO05D006414 7.6e-35 152.9 106 62.3
Cre06.g305250 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 3.5e-32 144.1 289 35.3
Aqoxy3G02634 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 9.6e-30 136.0 150 45.3
AagrBONN_evm.TU.Sc2ySwM_368.2061 Anthoceros agrestis HOM05D004937 ORTHO05D006414 6.5e-26 123.2 119 48.7
Lj2C267G4 Lonicera japonica HOM05D004937 ORTHO05D006414 2.5e-25 121.3 98 57.1
PRCOL_00006577 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 6.0e-24 116.7 294 29.6
PGSC0003DMG400026496 Solanum tuberosum HOM05D004937 ORTHO05D006414 2.5e-22 111.3 75 68.0
SGA_v2.0_scaffold4G01909 Striga asiatica HOM05D004937 ORTHO05D006414 2.5e-22 111.3 283 35.7
BcaC07g41757 Brassica carinata HOM05D004937 ORTHO05D006414 7.9e-16 89.7 58 79.3
Atru.chr10.2244 Acer truncatum HOM05D004937 ORTHO05D006414 6.7e-15 86.7 130 52.3
Os10g0401100 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 1.5e-11 75.5 51 62.7
Os07g0510300 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 3.4e-11 74.3 102 38.2
FAN25G1168 Fragaria x ananassa HOM05D004937 ORTHO05D006414 2.9e-10 71.2 115 41.7
Dinv30719 Davidia involucrata HOM05D004937 ORTHO05D006414 5.0e-10 70.5 69 44.9
Os07g0510800 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 1.2e-08 65.9 65 50.8
TPR.G37060 Trifolium pratense HOM05D004937 ORTHO05D006414 2.1e-08 65.1 162 34.6
PSO832G4260 Papaver somniferum HOM05D004937 ORTHO05D002819 6.1e-08 63.5 62 50.0


User provided reference genes

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