Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p47900 Brassica napus HOM05D004308 ORTHO05D005139 1.8e-279 965.3 493 100.0
BolC8t52327H Brassica oleracea HOM05D004308 ORTHO05D005139 1.7e-269 932.2 493 96.8
A09p64290 Brassica napus HOM05D004308 ORTHO05D005139 1.6e-264 915.6 493 93.9
BraA09t41772Z Brassica rapa HOM05D004308 ORTHO05D005139 1.6e-264 915.6 493 93.9
Sp1g10500 Schrenkiella parvula HOM05D004308 ORTHO05D005139 5.2e-247 857.4 498 89.0
BcaB03g13224 Brassica carinata HOM05D004308 ORTHO05D005139 1.2e-246 856.3 498 88.4
BraA08t35236Z Brassica rapa HOM05D004308 ORTHO05D005139 3.0e-242 841.6 501 86.4
A08p33180 Brassica napus HOM05D004308 ORTHO05D005139 8.7e-242 840.1 501 86.4
C08p15000 Brassica napus HOM05D004308 ORTHO05D005139 9.6e-241 836.6 501 86.4
BolC8t49130H Brassica oleracea HOM05D004308 ORTHO05D005139 9.6e-241 836.6 501 86.4
Thhalv10007452m.g Eutrema salsugineum HOM05D004308 ORTHO05D005139 1.4e-239 832.8 498 85.9
Carub.0001s1154 Capsella rubella HOM05D004308 ORTHO05D005139 1.2e-230 803.1 489 82.6
AL1G23050 Arabidopsis lyrata HOM05D004308 ORTHO05D005139 1.6e-227 792.7 509 80.4
Aa31LG1G2850 Aethionema arabicum HOM05D004308 ORTHO05D005139 6.9e-215 750.7 492 78.7
THA.LOC104811063 Tarenaya hassleriana HOM05D004308 ORTHO05D005139 1.2e-203 713.4 499 71.7
GSVIVG01025407001 Vitis vinifera HOM05D004308 ORTHO05D005139 4.4e-169 598.6 492 62.4
TWI32G0511 Tripterygium wilfordii HOM05D004308 ORTHO05D005139 4.8e-168 595.1 501 58.7
QL01p008001 Quercus lobata HOM05D004308 ORTHO05D005139 2.0e-166 589.7 495 61.2
Dinv13431 Davidia involucrata HOM05D004308 ORTHO05D005139 3.5e-166 589.0 502 61.2
Potri.003G216900 Populus trichocarpa HOM05D004308 ORTHO05D005139 8.6e-165 584.3 503 59.8
Atru.chr1.4126 Acer truncatum HOM05D004308 ORTHO05D005139 3.3e-164 582.4 491 60.5
CiPaw.13G173300 Carya illinoinensis HOM05D004308 ORTHO05D005139 4.2e-164 582.0 491 60.5
Gorai.011G002800 Gossypium raimondii HOM05D004308 ORTHO05D005139 5.5e-164 581.6 490 61.4
RcHm_v2.0_Chr5g0081551 Rosa chinensis HOM05D004308 ORTHO05D005139 2.1e-163 579.7 492 61.4
Duzib177G0548 Durio zibethinus HOM05D004308 ORTHO05D005139 1.8e-162 576.6 483 61.5
CiPaw.13G173400 Carya illinoinensis HOM05D004308 ORTHO05D005139 5.2e-162 575.1 491 59.7
Prupe.6G010000 Prunus persica HOM05D004308 ORTHO05D005139 6.8e-162 574.7 505 59.4
Aqoxy7G00472 Aquilegia oxysepala HOM05D004308 ORTHO05D005139 8.9e-162 574.3 506 58.7
ECA238G0198 Erigeron canadensis HOM05D004308 ORTHO05D005139 8.9e-162 574.3 494 60.7
Thecc.09G212800 Theobroma cacao HOM05D004308 ORTHO05D005139 8.9e-162 574.3 486 60.5
Ciclev10015009m.g Citrus clementina HOM05D004308 ORTHO05D005139 1.5e-161 573.5 488 59.8
ClCG08G005760 Citrullus lanatus HOM05D004308 ORTHO05D005139 7.5e-161 571.2 508 59.8
Sed0009913 Sechium edule HOM05D004308 ORTHO05D005139 2.8e-160 569.3 494 60.9
Eucgr.F02225 Eucalyptus grandis HOM05D004308 ORTHO05D005139 6.3e-160 568.2 491 59.3
FvH4_3g44841 Fragaria vesca HOM05D004308 ORTHO05D005139 8.3e-160 567.8 493 60.0
Manes.17G081200 Manihot esculenta HOM05D004308 ORTHO05D005139 8.3e-160 567.8 503 57.9
ClCG01G010120 Citrullus lanatus HOM05D004308 ORTHO05D005139 1.1e-159 567.4 508 59.6
AUR62000023 Chenopodium quinoa HOM05D004308 ORTHO05D005139 3.5e-158 562.4 482 61.0
MELO3C015647.2 Cucumis melo HOM05D004308 ORTHO05D005139 5.9e-158 561.6 501 59.5
MD03G1008000 Malus domestica HOM05D004308 ORTHO05D005139 7.8e-158 561.2 485 59.8
Hund21645 Selenicereus undatus HOM05D004308 ORTHO05D005139 1.0e-157 560.8 478 60.0
MD12G1151800 Malus domestica HOM05D004308 ORTHO05D005139 1.7e-157 560.1 489 59.5
Lj3g0012221 Lotus japonicus HOM05D004308 ORTHO05D005139 8.6e-157 557.8 487 60.0
LjContig00141g0028139 Lotus japonicus HOM05D004308 ORTHO05D005139 1.1e-156 557.4 487 60.2
Ah.06g193030 Amaranthus hybridus HOM05D004308 ORTHO05D005139 2.5e-156 556.2 483 60.2
MBI13_g29631_MAGBIO Magnolia biondii HOM05D004308 ORTHO05D005139 2.1e-155 553.1 500 58.0
PSO782G3227 Papaver somniferum HOM05D004308 ORTHO05D005139 2.1e-155 553.1 508 56.7
Actinidia06853 Actinidia chinensis HOM05D004308 ORTHO05D005139 2.3e-154 549.7 494 58.1
FAN11G1034 Fragaria x ananassa HOM05D004308 ORTHO05D005139 6.8e-154 548.1 481 59.5
TAR369G0492 Trochodendron aralioides HOM05D004308 ORTHO05D005139 3.4e-153 545.8 499 58.7
SGA_v2.0_scaffold28G11761 Striga asiatica HOM05D004308 ORTHO05D005139 7.5e-153 544.7 483 59.2
AT1G11880 Arabidopsis thaliana HOM05D004308 ORTHO05D005139 1.3e-152 543.9 340 80.3
Migut.I00336 Erythranthe guttata HOM05D004308 ORTHO05D005139 1.3e-152 543.9 487 58.5
DCAR_001990 Daucus carota HOM05D004308 ORTHO05D005139 4.9e-152 542.0 499 56.9
CSS0019756 Camellia sinensis var. sinensis HOM05D004308 ORTHO05D005139 6.4e-152 541.6 489 59.1
Glyma.07G221600 Glycine max HOM05D004308 ORTHO05D005139 1.4e-151 540.4 486 58.8
CAN.G158.6 Capsicum annuum HOM05D004308 ORTHO05D005139 1.9e-151 540.0 505 55.4
Nitab4.5_0001059g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 2.4e-151 539.7 490 56.5
Lalb_Chr05g0219691 Lupinus albus HOM05D004308 ORTHO05D005139 1.2e-150 537.3 502 55.8
Sopen01g002010 Solanum pennellii HOM05D004308 ORTHO05D005139 6.0e-150 535.0 500 54.8
arahy.Tifrunner.gnm1.ann1.6VJH5B Arachis hypogaea HOM05D004308 ORTHO05D005139 7.8e-150 534.6 495 56.8
Cc00_g18210 Coffea canephora HOM05D004308 ORTHO05D005139 3.9e-149 532.3 495 56.6
PGSC0003DMG400032139 Solanum tuberosum HOM05D004308 ORTHO05D005139 3.9e-149 532.3 500 54.4
Solyc01g006000.3 Solanum lycopersicum HOM05D004308 ORTHO05D005139 1.1e-148 530.8 500 54.8
EL10Ac4g10352 Beta vulgaris HOM05D004308 ORTHO05D005139 1.9e-148 530.0 482 58.9
Lsat_1_v5_gn_3_32861 Lactuca sativa HOM05D004308 ORTHO05D005139 3.6e-147 525.8 499 56.9
Peaxi162Scf00100g00724 Petunia axillaris HOM05D004308 ORTHO05D005139 6.2e-147 525.0 528 54.7
SalBow5G0018 Salvia bowleyana HOM05D004308 ORTHO05D005139 2.3e-146 523.1 508 54.7
TPR.G20984 Trifolium pratense HOM05D004308 ORTHO05D005139 1.5e-145 520.4 488 55.7
VMungo0251G2308 Vigna mungo HOM05D004308 ORTHO05D005139 2.6e-145 519.6 488 57.2
FAN21G1794 Fragaria x ananassa HOM05D004308 ORTHO05D005139 3.4e-145 519.2 458 59.0
Medtr4g084070 Medicago truncatula HOM05D004308 ORTHO05D005139 8.3e-144 514.6 489 55.2
Phvul.009G191800 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 8.3e-144 514.6 487 56.1
HanXRQChr07g0196751 Helianthus annuus HOM05D004308 ORTHO05D005139 5.4e-143 511.9 440 62.0
Gohir.A10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 1.6e-142 510.4 444 59.2
Duzib177G1053 Durio zibethinus HOM05D004308 ORTHO05D005139 8.6e-141 504.6 444 58.3
AUR62019194 Chenopodium quinoa HOM05D004308 ORTHO05D005139 2.5e-140 503.1 479 55.5
vmacro11846 Vaccinium macrocarpon HOM05D004308 ORTHO05D005139 2.5e-140 503.1 573 51.3
arahy.Tifrunner.gnm1.ann1.SIQ1MV Arachis hypogaea HOM05D004308 ORTHO05D005139 2.1e-139 500.0 503 54.1
PSO063G3498 Papaver somniferum HOM05D004308 ORTHO05D005139 8.1e-139 498.0 448 57.4
Psat7g130280 Pisum sativum HOM05D004308 ORTHO05D005139 3.1e-138 496.1 489 53.6
Hma1.2p1_0972F.1_g242793 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 6.8e-138 495.0 488 54.9
FAN25G2014 Fragaria x ananassa HOM05D004308 ORTHO05D005139 1.5e-137 493.8 438 58.7
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 4.4e-137 492.3 476 55.7
Haze_22983 Corylus avellana HOM05D004308 ORTHO05D005139 7.5e-137 491.5 434 59.0
Gohir.D10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 6.6e-133 478.4 392 63.3
Os12g0498700 Oryza sativa ssp. japonica HOM05D004308 ORTHO05D005139 8.6e-133 478.0 493 53.3
Lj9C99G0 Lonicera japonica HOM05D004308 ORTHO05D005139 3.3e-132 476.1 501 53.3
Rhsim13G0230300 Rhododendron simsii HOM05D004308 ORTHO05D005139 7.3e-132 474.9 448 54.7
Sabra03G0162000 Salix brachista HOM05D004308 ORTHO05D005139 9.9e-129 464.5 493 52.7
CiPaw.04G144200 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.9e-127 460.3 421 57.2
Zm00001eb162820 Zea mays HOM05D004308 ORTHO05D005139 2.4e-127 459.9 480 53.5
CsaV3_1G042220 Cucumis sativus L. HOM05D004308 ORTHO05D005139 2.1e-126 456.8 360 63.6
CANSAT78G0795 Cannabis sativa HOM05D004308 ORTHO05D005139 1.3e-125 454.1 385 61.3
Cpa.g.sc1833.2 Carica papaya HOM05D004308 ORTHO05D005139 2.8e-123 446.4 465 54.2
Phvul.002G098000 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 6.2e-115 418.7 343 61.8
ATR0598G220 Amborella trichopoda HOM05D004308 ORTHO05D005139 1.1e-111 407.9 389 53.2
CiPaw.13G173800 Carya illinoinensis HOM05D004308 ORTHO05D005139 5.4e-111 405.6 485 48.5
CARHR012200 Cardamine hirsuta HOM05D004308 ORTHO05D005139 1.6e-110 404.1 249 83.9
MD14G1141900 Malus domestica HOM05D004308 ORTHO05D005139 1.5e-108 397.5 345 59.1
Nitab4.5_0022753g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 3.3e-108 396.4 357 56.0
Mapoly0040s0060 Marchantia polymorpha HOM05D004308 ORTHO05D005139 8.4e-104 381.7 499 42.9
Pp3c10_8190 Physcomitrium patens HOM05D004308 ORTHO05D005139 1.4e-103 380.9 502 42.4
Ca_18762_v3 Cicer arietinum L. HOM05D004308 ORTHO05D005139 2.5e-103 380.2 433 48.3
unitig_749.g14167 Utricularia gibba HOM05D004308 ORTHO05D005139 2.5e-103 380.2 483 47.8
Lju963A2G3 Lonicera japonica HOM05D004308 ORTHO05D005139 6.7e-101 372.1 339 58.1
HPP92_026953 Vanilla planifolia HOM05D004308 ORTHO05D005139 1.6e-99 367.5 335 56.4
Sc09g0000270 Simmondsia chinensis HOM05D004308 ORTHO05D005139 1.1e-98 364.8 316 58.5
SHI31261 Sapria himalayana HOM05D004308 ORTHO05D005139 1.4e-98 364.4 590 40.8
MD11G1011600 Malus domestica HOM05D004308 ORTHO05D005139 1.0e-96 358.2 388 51.0
Nn4g26332 Nelumbo nucifera HOM05D004308 ORTHO05D005139 1.3e-96 357.8 494 46.2
SMO203G0184 Selaginella moellendorffii HOM05D004308 ORTHO05D005139 1.5e-92 344.4 485 42.9
Zm00001eb118570 Zea mays HOM05D004308 ORTHO05D005139 2.0e-89 334.0 288 59.7
Lj9A102G3 Lonicera japonica HOM05D004308 ORTHO05D005139 1.0e-88 331.6 339 53.1
Hma1.2p1_0972F.1_g242796 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 3.0e-85 320.1 257 63.4
CiPaw.13G173700 Carya illinoinensis HOM05D004308 ORTHO05D005139 7.4e-84 315.5 364 49.7
Lsat_1_v5_gn_4_166260 Lactuca sativa HOM05D004308 ORTHO05D005139 1.5e-81 307.8 285 54.7
SEGI_38936 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 1.5e-81 307.8 367 46.9
COL.COLO4_34992 Corchorus olitorius HOM05D004308 ORTHO05D005139 1.3e-80 304.7 239 67.4
CiPaw.13G173500 Carya illinoinensis HOM05D004308 ORTHO05D005139 3.2e-79 300.1 271 56.1
MD03G1008200 Malus domestica HOM05D004308 ORTHO05D005139 1.4e-77 294.7 339 49.3
TAR623G1609 Trochodendron aralioides HOM05D004308 ORTHO05D005139 1.4e-74 284.6 234 61.1
Lju1040C2G10 Lonicera japonica HOM05D004308 ORTHO05D005139 1.7e-67 261.2 242 55.4
Lj9A97G16 Lonicera japonica HOM05D004308 ORTHO05D005139 3.7e-67 260.0 361 42.4
CiPaw.04G144000 Carya illinoinensis HOM05D004308 ORTHO05D005139 3.5e-65 253.4 171 68.4
Lju366A0G8 Lonicera japonica HOM05D004308 ORTHO05D005139 4.2e-63 246.5 170 67.6
SEGI_23646 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 9.7e-60 235.3 216 54.2
CiPaw.13G173600 Carya illinoinensis HOM05D004308 ORTHO05D005139 9.1e-58 228.8 217 53.9
Lsat_1_v5_gn_3_8900 Lactuca sativa HOM05D004308 ORTHO05D005139 6.8e-53 212.6 202 55.0
Lju357C0G0 Lonicera japonica HOM05D004308 ORTHO05D005139 1.3e-51 208.4 380 35.5
Lju2253A0T6 Lonicera japonica HOM05D004308 ORTHO05D005139 1.8e-50 204.5 257 50.2
MCO10G290 Micromonas commoda HOM05D004308 ORTHO05D005139 1.2e-49 201.8 493 32.0
CiPaw.13G174000 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.7e-49 200.7 208 50.0
Sc09g0000260 Simmondsia chinensis HOM05D004308 ORTHO05D005139 7.7e-49 199.1 171 59.6
Lju963A1G2 Lonicera japonica HOM05D004308 ORTHO05D005139 8.9e-45 185.7 398 33.9
QL01p010377 Quercus lobata HOM05D004308 ORTHO05D005139 8.9e-45 185.7 122 73.8
Lju1680A2G14 Lonicera japonica HOM05D004308 ORTHO05D005139 2.0e-41 174.5 206 50.5
Gohir.A10G158900 Gossypium hirsutum HOM05D004308 ORTHO05D005139 4.5e-41 173.3 210 46.7
Nitab4.5_0000775g0120 Nicotiana tabacum HOM05D004308 ORTHO05D005139 1.7e-32 144.8 173 48.6
SEGI_23095 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 3.9e-32 143.7 145 50.3
DCAR_001389 Daucus carota HOM05D004308 ORTHO05D005139 2.1e-30 137.9 105 68.6
PRCOL_00002453 Prasinoderma coloniale HOM05D004308 ORTHO05D005139 2.8e-30 137.5 441 27.7
Cre07.g320650 Chlamydomonas reinhardtii HOM05D004308 ORTHO05D005139 2.1e-25 121.3 518 26.3
Glyma.20G019967 Glycine max HOM05D004308 ORTHO05D005139 3.5e-25 120.6 133 46.6
Nitab4.5_0000032g0180 Nicotiana tabacum HOM05D004308 ORTHO05D005139 1.1e-23 115.5 119 56.3
Glyma.20G020033 Glycine max HOM05D004308 ORTHO05D005139 1.2e-20 105.5 95 56.8
Lju1680A2G13 Lonicera japonica HOM05D004308 ORTHO05D005139 5.8e-20 103.2 64 82.8
Lju963A4G1 Lonicera japonica HOM05D004308 ORTHO05D005139 7.6e-20 102.8 80 55.0
Lju2253C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 1.1e-18 99.0 106 51.9
Lj9C97T10 Lonicera japonica HOM05D004308 ORTHO05D005139 1.4e-18 98.6 106 51.9
Lju366C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 7.1e-18 96.3 106 50.0
Lsat_1_v5_gn_9_99701 Lactuca sativa HOM05D004308 ORTHO05D005139 2.7e-17 94.4 190 36.3
Lj9A108T0 Lonicera japonica HOM05D004308 ORTHO05D005139 4.6e-17 93.6 124 45.2
CBR_g46841 Chara braunii HOM05D004308 ORTHO05D005139 1.8e-13 81.6 84 46.4
CiPaw.13G174100 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.3e-11 75.5 78 51.3
Atru.chr10.196 Acer truncatum HOM05D004308 ORTHO05D005139 6.4e-11 73.2 83 51.8
Lju357C1T0 Lonicera japonica HOM05D004308 ORTHO05D005139 4.6e-09 67.0 81 46.9
Lju963C4T0 Lonicera japonica HOM05D004308 ORTHO05D005139 8.7e-08 62.8 82 42.7
Lju366C0T2 Lonicera japonica HOM05D004308 ORTHO05D005139 1.9e-07 61.6 91 38.5
Atru.chr10.219 Acer truncatum HOM05D004308 ORTHO05D005139 4.3e-07 60.5 132 39.4
AUR62037285 Chenopodium quinoa HOM05D004308 ORTHO05D005139 4.8e-06 57.0 39 64.1


User provided reference genes

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