Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p47510 Brassica napus HOM05D006638 ORTHO05D008246 2.1e-135 485.7 250 100.0
BolC8t52292H Brassica oleracea HOM05D006638 ORTHO05D008246 6.3e-132 474.2 250 97.6
BcaC07g41715 Brassica carinata HOM05D006638 ORTHO05D008246 2.7e-127 458.8 239 97.9
BraA09t41748Z Brassica rapa HOM05D006638 ORTHO05D008246 6.6e-121 437.6 239 92.9
BcaC07g42567 Brassica carinata HOM05D006638 ORTHO05D008246 1.5e-117 426.4 239 90.8
CARHR012550 Cardamine hirsuta HOM05D006638 ORTHO05D008246 1.6e-106 389.8 240 84.2
Carub.0001s1192 Capsella rubella HOM05D006638 ORTHO05D008246 3.5e-106 388.7 239 84.1
Thhalv10008640m.g Eutrema salsugineum HOM05D006638 ORTHO05D008246 2.3e-105 386.0 239 83.7
AL1G23530 Arabidopsis lyrata HOM05D006638 ORTHO05D008246 5.0e-105 384.8 239 82.8
AT1G12244 Arabidopsis thaliana HOM05D006638 ORTHO05D008246 4.3e-104 381.7 250 80.4
Aa31LG1G2420 Aethionema arabicum HOM05D006638 ORTHO05D008246 1.2e-93 347.1 236 78.0
Sp1g10860 Schrenkiella parvula HOM05D006638 ORTHO05D008246 9.9e-93 344.0 239 76.6
THA.LOC104809455 Tarenaya hassleriana HOM05D006638 ORTHO05D008246 1.6e-90 336.7 227 75.3
Atru.chr5.234 Acer truncatum HOM05D006638 ORTHO05D008246 1.2e-77 293.9 240 64.6
QL04p037061 Quercus lobata HOM05D006638 ORTHO05D008246 8.4e-76 287.7 218 66.1
Prupe.2G137100 Prunus persica HOM05D006638 ORTHO05D008246 2.3e-73 279.6 214 66.4
RcHm_v2.0_Chr1g0349031 Rosa chinensis HOM05D006638 ORTHO05D008246 5.6e-72 275.0 205 67.3
Cpa.g.sc49.148 Carica papaya HOM05D006638 ORTHO05D008246 9.6e-72 274.2 239 61.1
FAN06G4764 Fragaria x ananassa HOM05D006638 ORTHO05D008246 1.3e-71 273.9 206 68.0
FAN10G1288 Fragaria x ananassa HOM05D006638 ORTHO05D008246 1.6e-71 273.5 206 68.0
COL.COLO4_12484 Corchorus olitorius HOM05D006638 ORTHO05D008246 3.6e-71 272.3 226 63.3
Haze_02520 Corylus avellana HOM05D006638 ORTHO05D008246 3.6e-71 272.3 213 64.3
FAN03G2254 Fragaria x ananassa HOM05D006638 ORTHO05D008246 4.8e-71 271.9 206 67.5
FAN10G2039 Fragaria x ananassa HOM05D006638 ORTHO05D008246 6.2e-71 271.6 206 67.5
FvH4_7g11040 Fragaria vesca HOM05D006638 ORTHO05D008246 4.0e-70 268.9 205 67.3
Sabra01G0171300 Salix brachista HOM05D006638 ORTHO05D008246 4.0e-70 268.9 227 63.9
Hma1.2p1_0001F.1_g001240 Hydrangea macrophylla HOM05D006638 ORTHO05D008246 6.9e-70 268.1 231 61.0
Potri.004G225600 Populus trichocarpa HOM05D006638 ORTHO05D008246 6.9e-70 268.1 190 71.6
Atru.BG.68.p Acer truncatum HOM05D006638 ORTHO05D008246 1.5e-69 266.9 175 75.4
CiPaw.14G025400 Carya illinoinensis HOM05D006638 ORTHO05D008246 1.5e-69 266.9 191 68.1
Dinv44116 Davidia involucrata HOM05D006638 ORTHO05D008246 1.5e-69 266.9 185 69.7
TAR636G0703 Trochodendron aralioides HOM05D006638 ORTHO05D008246 2.0e-69 266.5 192 69.3
Nn2g12739 Nelumbo nucifera HOM05D006638 ORTHO05D008246 2.6e-69 266.2 219 63.0
Thecc.01G384300 Theobroma cacao HOM05D006638 ORTHO05D008246 4.5e-69 265.4 198 69.2
MD07G1114500 Malus domestica HOM05D006638 ORTHO05D008246 7.6e-69 264.6 221 62.4
Lalb_Chr07g0190301 Lupinus albus HOM05D006638 ORTHO05D008246 1.3e-68 263.8 185 69.2
Rhsim05G0215700 Rhododendron simsii HOM05D006638 ORTHO05D008246 1.3e-68 263.8 199 66.3
Glyma.03G033200 Glycine max HOM05D006638 ORTHO05D008246 2.2e-68 263.1 185 68.1
CANSAT56G0739 Cannabis sativa HOM05D006638 ORTHO05D008246 2.9e-68 262.7 187 68.4
Duzib133G1291 Durio zibethinus HOM05D006638 ORTHO05D008246 4.9e-68 261.9 199 68.3
Medtr4g027430 Medicago truncatula HOM05D006638 ORTHO05D008246 2.4e-67 259.6 231 58.0
Ciclev10023836m.g Citrus clementina HOM05D006638 ORTHO05D008246 3.2e-67 259.2 189 71.4
Lj7A537T49 Lonicera japonica HOM05D006638 ORTHO05D008246 3.2e-67 259.2 196 64.8
arahy.Tifrunner.gnm1.ann1.WQW1G6 Arachis hypogaea HOM05D006638 ORTHO05D008246 7.1e-67 258.1 180 67.8
Lj3g0022109 Lotus japonicus HOM05D006638 ORTHO05D008246 9.3e-67 257.7 205 61.0
Aqoxy7G00747 Aquilegia oxysepala HOM05D006638 ORTHO05D008246 1.2e-66 257.3 201 66.2
Eucgr.H00160 Eucalyptus grandis HOM05D006638 ORTHO05D008246 2.1e-66 256.5 178 70.8
Gohir.A12G095100 Gossypium hirsutum HOM05D006638 ORTHO05D008246 2.1e-66 256.5 206 66.0
GSVIVG01018156001 Vitis vinifera HOM05D006638 ORTHO05D008246 2.1e-66 256.5 193 68.4
Gorai.008G106400 Gossypium raimondii HOM05D006638 ORTHO05D008246 2.7e-66 256.1 209 64.6
Psat0s3685g0120 Pisum sativum HOM05D006638 ORTHO05D008246 3.5e-66 255.8 187 65.8
Sopen01g036620 Solanum pennellii HOM05D006638 ORTHO05D008246 4.6e-66 255.4 185 67.0
Solyc01g090880.3 Solanum lycopersicum HOM05D006638 ORTHO05D008246 6.0e-66 255.0 202 65.3
PGSC0003DMG400025975 Solanum tuberosum HOM05D006638 ORTHO05D008246 6.0e-66 255.0 185 67.0
TWI23G0519 Tripterygium wilfordii HOM05D006638 ORTHO05D008246 6.0e-66 255.0 201 64.2
CsaV3_3G007360 Cucumis sativus L. HOM05D006638 ORTHO05D008246 1.0e-65 254.2 205 62.0
ECA234G0121 Erigeron canadensis HOM05D006638 ORTHO05D008246 2.3e-65 253.1 183 66.7
HanXRQChr12g0384211 Helianthus annuus HOM05D006638 ORTHO05D008246 3.0e-65 252.7 211 61.1
Sc23g0003780 Simmondsia chinensis HOM05D006638 ORTHO05D008246 3.0e-65 252.7 188 68.1
Ca_19858_v3 Cicer arietinum L. HOM05D006638 ORTHO05D008246 3.9e-65 252.3 207 58.0
arahy.Tifrunner.gnm1.ann1.B645Y9 Arachis hypogaea HOM05D006638 ORTHO05D008246 6.7e-65 251.5 187 65.2
Migut.N01611 Erythranthe guttata HOM05D006638 ORTHO05D008246 8.7e-65 251.1 226 57.1
PSO170G5140 Papaver somniferum HOM05D006638 ORTHO05D008246 1.1e-64 250.8 230 57.8
SGA_v2.0_scaffold43G16517 Striga asiatica HOM05D006638 ORTHO05D008246 1.1e-64 250.8 183 66.7
CAN.G1872.5 Capsicum annuum HOM05D006638 ORTHO05D008246 4.3e-64 248.8 185 66.5
ClCG05G000210 Citrullus lanatus HOM05D006638 ORTHO05D008246 4.3e-64 248.8 183 65.6
DCAR_029874 Daucus carota HOM05D006638 ORTHO05D008246 4.3e-64 248.8 185 66.5
Nitab4.5_0011151g0010 Nicotiana tabacum HOM05D006638 ORTHO05D008246 7.4e-64 248.1 185 65.4
CDE02G4315 Ceratophyllum demersum HOM05D000218 ORTHO05D000125 9.6e-64 247.7 175 71.4
Nitab4.5_0000859g0190 Nicotiana tabacum HOM05D006638 ORTHO05D008246 2.8e-63 246.1 176 68.2
SalBow1G6174 Salvia bowleyana HOM05D006638 ORTHO05D008246 3.7e-63 245.7 225 60.0
MSTRG.4914 Avicennia marina HOM05D006638 ORTHO05D008246 6.2e-63 245.0 219 60.3
unitig_748.g7114 Utricularia gibba HOM05D006638 ORTHO05D008246 1.4e-62 243.8 184 63.6
EL10Ac1g00836 Beta vulgaris HOM05D006638 ORTHO05D008246 3.1e-62 242.7 204 62.7
Hund17047 Selenicereus undatus HOM05D006638 ORTHO05D008246 5.3e-62 241.9 180 67.8
Lsat_1_v5_gn_4_45501 Lactuca sativa HOM05D006638 ORTHO05D008246 9.0e-62 241.1 218 58.7
PGR142G0596 Punica granatum HOM05D006638 ORTHO05D008246 1.5e-61 240.4 220 58.2
Lj1g0022300 Lotus japonicus HOM05D006638 ORTHO05D008246 7.6e-61 238.0 205 58.5
Cc02_g24450 Coffea canephora HOM05D006638 ORTHO05D008246 6.0e-58 228.4 177 66.1
VMungo0331G0589 Vigna mungo HOM05D006638 ORTHO05D008246 3.0e-57 226.1 185 61.1
TAR629G0886 Trochodendron aralioides HOM05D006638 ORTHO05D008246 2.1e-55 219.9 242 51.7
Peaxi162Scf00803g00218 Petunia axillaris HOM05D006638 ORTHO05D008246 1.8e-54 216.9 190 57.4
HPP92_022319 Vanilla planifolia HOM05D006638 ORTHO05D008246 6.9e-54 214.9 172 63.4
HPP92_022327 Vanilla planifolia HOM05D006638 ORTHO05D008246 3.4e-53 212.6 172 62.8
MELO3C005958.2 Cucumis melo HOM05D006638 ORTHO05D008246 8.5e-52 208.0 279 42.7
Actinidia33482 Actinidia chinensis HOM05D006638 ORTHO05D008246 5.5e-51 205.3 191 60.7
Manes.17G011000 Manihot esculenta HOM05D006638 ORTHO05D008246 6.1e-50 201.8 176 62.5
Phvul.010G071600 Phaseolus vulgaris HOM05D006638 ORTHO05D008246 8.7e-49 198.0 128 73.4
Os10g0555200 Oryza sativa ssp. japonica HOM05D006638 ORTHO05D008246 2.8e-47 193.0 191 55.5
Gohir.D12G097700 Gossypium hirsutum HOM05D006638 ORTHO05D008246 4.1e-46 189.1 150 66.7
ATR0317G113 Amborella trichopoda HOM05D006638 ORTHO05D008246 1.2e-45 187.6 151 61.6
Ah.01g003990 Amaranthus hybridus HOM05D006638 ORTHO05D008246 1.0e-44 184.5 144 67.4
CSS0044007 Camellia sinensis var. sinensis HOM05D006638 ORTHO05D008246 1.3e-44 184.1 219 51.1
CSS0019813 Camellia sinensis var. sinensis HOM05D006638 ORTHO05D008246 2.9e-44 183.0 219 51.1
Mapoly0010s0011 Marchantia polymorpha HOM05D006638 ORTHO05D008246 6.1e-42 175.3 152 59.9
MBI04_g09497_MAGBIO Magnolia biondii HOM05D006638 ORTHO05D008246 2.3e-41 173.3 192 53.1
TPR.G27556 Trifolium pratense HOM05D006638 ORTHO05D008246 3.9e-41 172.6 178 51.7
Sed0019776 Sechium edule HOM05D006638 ORTHO05D008246 6.7e-41 171.8 122 67.2
Zm00001eb023510 Zea mays HOM05D006638 ORTHO05D008246 3.7e-39 166.0 163 58.3
Hma1.2p1_0001F.1_g001250 Hydrangea macrophylla HOM05D006638 ORTHO05D008246 6.3e-39 165.2 118 69.5
vmacro21035 Vaccinium macrocarpon HOM05D006638 ORTHO05D008246 1.4e-38 164.1 122 67.2
Oeu000021.1 Olea europaea HOM05D006638 ORTHO05D008246 5.0e-36 155.6 109 72.5
AagrBONN_evm.TU.Sc2ySwM_228.3890 Anthoceros agrestis HOM05D006638 ORTHO05D008246 1.1e-35 154.5 152 53.3
CSS0006996 Camellia sinensis var. sinensis HOM05D006638 ORTHO05D008246 2.5e-35 153.3 141 58.2
Medtr2g064690 Medicago truncatula HOM05D006638 ORTHO05D008246 3.2e-35 152.9 125 62.4
Pp3c1_23680 Physcomitrium patens HOM05D006638 ORTHO05D008246 1.0e-33 147.9 191 44.5
CSS0041268 Camellia sinensis var. sinensis HOM05D006638 ORTHO05D008246 4.4e-32 142.5 141 56.0
Rhsim01G0151400 Rhododendron simsii HOM05D006638 ORTHO05D008246 1.3e-31 141.0 105 65.7
FAN01G0965 Fragaria x ananassa HOM05D006638 ORTHO05D008246 6.3e-31 138.7 98 73.5
SMO340G0150 Selaginella moellendorffii HOM05D006638 ORTHO05D008246 3.0e-25 119.8 147 47.6
TPR.G4994 Trifolium pratense HOM05D006954 ORTHO05D008246 2.7e-21 106.7 96 54.2
Pp3c1_23620 Physcomitrium patens HOM05D006638 ORTHO05D008246 1.0e-20 104.8 172 40.7
CBR_g17705 Chara braunii HOM05D006638 ORTHO05D008246 2.1e-18 97.1 168 37.5
Medtr2g064700 Medicago truncatula HOM05D006638 ORTHO05D008246 4.1e-14 82.8 68 60.3
Lsat_1_v5_gn_6_51920 Lactuca sativa HOM05D006638 ORTHO05D008246 1.6e-13 80.9 58 63.8
vmacro21034 Vaccinium macrocarpon HOM05D006638 ORTHO05D008246 2.7e-13 80.1 75 50.7
Medtr2g064670 Medicago truncatula HOM05D006638 ORTHO05D008246 4.7e-10 69.3 87 42.5
Solyc12g035620.2 Solanum lycopersicum HOM05D006638 ORTHO05D008246 1.5e-08 64.3 48 62.5
Lsat_1_v5_gn_1_125220 Lactuca sativa HOM05D006638 ORTHO05D008246 4.4e-08 62.8 46 60.9
MELO3C033920.2 Cucumis melo HOM05D006638 ORTHO05D008246 8.3e-07 58.5 99 37.4


User provided reference genes

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