Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p47210 Brassica napus HOM05D007482 ORTHO05D003038 7.6e-57 223.8 128 100.0
BolC8t52260H Brassica oleracea HOM05D007482 ORTHO05D003038 1.0e-53 213.4 131 94.7
BraA09t41719Z Brassica rapa HOM05D007482 ORTHO05D003038 1.9e-52 209.1 130 94.6
A09p63710 Brassica napus HOM05D007482 ORTHO05D003038 5.7e-52 207.6 134 91.8
Sp1g11260 Schrenkiella parvula HOM05D007482 ORTHO05D003038 1.5e-33 146.4 130 70.0
Thhalv10023017m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 3.1e-26 122.1 122 50.0
AT1G12663 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 1.2e-25 120.2 122 48.4
Sp1g11270 Schrenkiella parvula HOM05D007482 ORTHO05D003038 2.2e-24 115.9 130 44.6
AL1G24130 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 3.8e-24 115.2 123 46.3
Thhalv10009942m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 4.2e-23 111.7 105 53.3
BcaB08g34258 Brassica carinata HOM05D007482 ORTHO05D003038 7.2e-23 110.9 131 42.7
C08p47200 Brassica napus HOM05D007482 ORTHO05D003038 1.2e-22 110.2 132 42.4
A09p63700 Brassica napus HOM05D007482 ORTHO05D003038 1.6e-22 109.8 132 42.4
BraA09t41718Z Brassica rapa HOM05D007482 ORTHO05D003038 1.6e-22 109.8 132 42.4
Carub.0004s0495 Capsella rubella HOM05D007482 ORTHO05D003038 4.7e-22 108.2 135 44.4
A09p35330 Brassica napus HOM05D007482 ORTHO05D003038 6.1e-22 107.8 129 42.6
C05p30030 Brassica napus HOM05D007482 ORTHO05D003038 8.0e-22 107.5 130 43.8
BolC5t31740H Brassica oleracea HOM05D007482 ORTHO05D003038 8.0e-22 107.5 130 43.8
CARHR012960 Cardamine hirsuta HOM05D007482 ORTHO05D003038 1.0e-21 107.1 132 44.7
CARHR035990 Cardamine hirsuta HOM05D007482 ORTHO05D003038 1.0e-21 107.1 129 45.0
BcaB08g34257 Brassica carinata HOM05D007482 ORTHO05D003038 2.3e-21 105.9 113 45.1
BraA09t39063Z Brassica rapa HOM05D007482 ORTHO05D003038 8.8e-21 104.0 129 41.9
C08p47190 Brassica napus HOM05D007482 ORTHO05D003038 9.7e-20 100.5 118 44.1
Carub.0001s1239 Capsella rubella HOM05D007482 ORTHO05D003038 1.3e-19 100.1 131 45.0
AL1G24160 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 2.2e-19 99.4 128 43.0
C05p44560 Brassica napus HOM05D007482 ORTHO05D003038 2.4e-18 95.9 125 41.6
BcaB08g34260 Brassica carinata HOM05D007482 ORTHO05D003038 5.3e-18 94.7 128 41.4
A05p29150 Brassica napus HOM05D007482 ORTHO05D003038 5.3e-18 94.7 125 41.6
Carub.0001s1236 Capsella rubella HOM05D007482 ORTHO05D003038 5.3e-18 94.7 129 50.4
Thhalv10009133m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 7.0e-18 94.4 118 44.1
BolC5t33183H Brassica oleracea HOM05D007482 ORTHO05D003038 1.2e-17 93.6 125 40.8
BraA05t21798Z Brassica rapa HOM05D007482 ORTHO05D003038 1.6e-17 93.2 125 40.8
CARHR012950 Cardamine hirsuta HOM05D007482 ORTHO05D003038 2.6e-17 92.4 129 37.2
CARHR182820 Cardamine hirsuta HOM05D007482 ORTHO05D003038 2.6e-17 92.4 95 46.3
BcaB08g34259 Brassica carinata HOM05D007482 ORTHO05D003038 4.5e-17 91.7 128 39.8
C08p47220 Brassica napus HOM05D007482 ORTHO05D003038 4.5e-17 91.7 128 39.8
BolC8t52261H Brassica oleracea HOM05D007482 ORTHO05D003038 4.5e-17 91.7 128 39.8
AL1G24150 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 7.7e-17 90.9 91 57.1
BcaC01g02807 Brassica carinata HOM05D007482 ORTHO05D003038 7.7e-17 90.9 132 40.2
C03p60060 Brassica napus HOM05D007482 ORTHO05D003038 7.7e-17 90.9 132 40.2
BolC8t52262H Brassica oleracea HOM05D007482 ORTHO05D003038 1.0e-16 90.5 128 39.1
BolC5t29803H Brassica oleracea HOM05D007482 ORTHO05D003038 2.9e-16 89.0 151 49.0
CARHR012980 Cardamine hirsuta HOM05D007482 ORTHO05D003038 3.8e-16 88.6 128 47.7
C05p10610 Brassica napus HOM05D007482 ORTHO05D003038 5.0e-16 88.2 151 49.0
A06p32510 Brassica napus HOM05D007482 ORTHO05D003038 6.5e-16 87.8 132 39.4
BcaC05g28380 Brassica carinata HOM05D007482 ORTHO05D003038 1.1e-15 87.0 108 41.7
A09p63720 Brassica napus HOM05D007482 ORTHO05D003038 1.5e-15 86.7 132 38.6
BraA09t41720Z Brassica rapa HOM05D007482 ORTHO05D003038 1.5e-15 86.7 132 38.6
BcaC05g25121 Brassica carinata HOM05D007482 ORTHO05D003038 1.9e-15 86.3 127 39.4
Carub.0001s1238 Capsella rubella HOM05D007482 ORTHO05D003038 1.9e-15 86.3 129 38.8
C05p44570 Brassica napus HOM05D007482 ORTHO05D003038 2.5e-15 85.9 120 38.3
C08p47180 Brassica napus HOM05D007482 ORTHO05D003038 2.5e-15 85.9 125 39.2
BolC5t33184H Brassica oleracea HOM05D007482 ORTHO05D003038 2.5e-15 85.9 120 38.3
Sp1g11250 Schrenkiella parvula HOM05D007482 ORTHO05D003038 3.2e-15 85.5 128 39.1
BraA09t41717Z Brassica rapa HOM05D007482 ORTHO05D003038 4.2e-15 85.1 51 68.6
BolC8t52259H Brassica oleracea HOM05D007482 ORTHO05D003038 7.2e-15 84.3 116 38.8
A05p29160 Brassica napus HOM05D007482 ORTHO05D003038 1.2e-14 83.6 114 38.6
AT1G12660 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 1.6e-14 83.2 128 39.1
A09p35320 Brassica napus HOM05D007482 ORTHO05D003038 2.1e-14 82.8 125 43.2
THA.LOC104823573 Tarenaya hassleriana HOM05D007482 ORTHO05D003038 6.1e-14 81.3 124 36.3
Carub.0001s1235 Capsella rubella HOM05D007482 ORTHO05D003038 8.0e-14 80.9 128 37.5
BraA09t39062Z Brassica rapa HOM05D007482 ORTHO05D003038 1.0e-13 80.5 113 44.2
THA.LOC104823572 Tarenaya hassleriana HOM05D007482 ORTHO05D003038 1.0e-13 80.5 129 38.0
Thhalv10009322m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 3.0e-13 79.0 106 41.5
Thhalv10009569m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 4.0e-13 78.6 116 42.2
C05p30070 Brassica napus HOM05D007482 ORTHO05D003038 5.2e-13 78.2 125 41.6
BcaB07g32750 Brassica carinata HOM05D007482 ORTHO05D003038 6.8e-13 77.8 109 43.1
BraA05t21800Z Brassica rapa HOM05D007482 ORTHO05D003038 2.0e-12 76.3 114 36.8
BcaC05g25122 Brassica carinata HOM05D007482 ORTHO05D003038 2.6e-12 75.9 128 40.6
Thecc.06G059000 Theobroma cacao HOM05D005672 ORTHO05D003038 3.4e-12 75.5 130 34.6
Duzib160G0695 Durio zibethinus HOM05D005672 ORTHO05D003038 4.4e-12 75.1 123 37.4
BolC8t52263H Brassica oleracea HOM05D007482 ORTHO05D003038 5.7e-12 74.7 119 36.1
BraA06t26175Z Brassica rapa HOM05D007482 ORTHO05D003038 1.3e-11 73.6 113 37.2
C05p10620 Brassica napus HOM05D007482 ORTHO05D003038 1.7e-11 73.2 129 39.5
BolC3t18270H Brassica oleracea HOM05D007482 ORTHO05D003038 1.7e-11 73.2 113 37.2
BolC5t29804H Brassica oleracea HOM05D007482 ORTHO05D003038 1.7e-11 73.2 129 39.5
Thhalv10017433m.g Eutrema salsugineum HOM05D007482 ORTHO05D016827 1.7e-11 73.2 129 34.1
Duzib192G0432 Durio zibethinus HOM05D005672 ORTHO05D003038 2.2e-11 72.8 127 33.1
Duzib192G0711 Durio zibethinus HOM05D005672 ORTHO05D003038 2.2e-11 72.8 127 33.1
A09p63730 Brassica napus HOM05D007482 ORTHO05D003038 2.8e-11 72.4 113 36.3
Manes.04G122400 Manihot esculenta HOM05D005672 ORTHO05D003038 3.7e-11 72.0 127 37.0
Thecc.06G084400 Theobroma cacao HOM05D005672 ORTHO05D003038 3.7e-11 72.0 130 32.3
AL1G24120 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 4.8e-11 71.6 122 36.1
Duzib192G0507 Durio zibethinus HOM05D005672 ORTHO05D003038 4.8e-11 71.6 127 32.3
Thecc.06G054500 Theobroma cacao HOM05D005672 ORTHO05D003038 8.3e-11 70.9 119 33.6
AT1G12672 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 1.8e-10 69.7 126 38.1
BolC8t52257H Brassica oleracea HOM05D007482 ORTHO05D003038 3.1e-10 68.9 46 63.0
PSO339G2623 Papaver somniferum HOM05D007482 ORTHO05D003038 3.1e-10 68.9 133 36.1
A06p09020 Brassica napus HOM05D007482 ORTHO05D003038 4.1e-10 68.6 129 38.0
BraA06t24091Z Brassica rapa HOM05D007482 ORTHO05D003038 4.1e-10 68.6 129 38.0
Prupe.3G072800 Prunus persica HOM05D005672 ORTHO05D003038 7.0e-10 67.8 129 31.8
CARHR012970 Cardamine hirsuta HOM05D007482 ORTHO05D003038 9.1e-10 67.4 129 33.3
C08p47230 Brassica napus HOM05D007482 ORTHO05D003038 1.2e-09 67.0 113 34.5
Thecc.06G084800 Theobroma cacao HOM05D005672 ORTHO05D003038 1.2e-09 67.0 130 28.5
Eucgr.L03103 Eucalyptus grandis HOM05D005672 ORTHO05D003038 2.0e-09 66.2 126 32.5
Manes.04G122300 Manihot esculenta HOM05D005672 ORTHO05D003038 2.0e-09 66.2 128 31.2
Nn8g39245 Nelumbo nucifera HOM05D005672 ORTHO05D003038 2.0e-09 66.2 128 37.5
PSO339G0096 Papaver somniferum HOM05D007482 ORTHO05D003038 2.0e-09 66.2 130 32.3
Manes.04G122200 Manihot esculenta HOM05D005672 ORTHO05D003038 2.7e-09 65.9 130 32.3
Thecc.06G084700 Theobroma cacao HOM05D005672 ORTHO05D003038 3.5e-09 65.5 130 28.5
MD09G1214500 Malus domestica HOM05D005672 ORTHO05D003038 7.7e-09 64.3 127 33.9
FAN05G0478 Fragaria x ananassa HOM05D005672 ORTHO05D003038 1.0e-08 63.9 130 33.1
MD17G1196900 Malus domestica HOM05D005672 ORTHO05D003038 1.3e-08 63.5 133 32.3
AL1G24140 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 1.7e-08 63.2 58 50.0
PSO339G1026 Papaver somniferum HOM05D007482 ORTHO05D003038 1.7e-08 63.2 130 32.3
BolC5t31743H Brassica oleracea HOM05D007482 ORTHO05D003038 2.9e-08 62.4 109 40.4
Carub.0002s1663 Capsella rubella HOM05D007482 ORTHO05D003038 2.9e-08 62.4 127 26.0
PSO782G2157 Papaver somniferum HOM05D005672 ORTHO05D003038 2.9e-08 62.4 124 30.6
TAR624G0127 Trochodendron aralioides HOM05D005672 ORTHO05D003038 2.9e-08 62.4 134 33.6
Ciclev10026803m.g Citrus clementina HOM05D005672 ORTHO05D003038 3.8e-08 62.0 46 60.9
Prupe.6G180200 Prunus persica HOM05D005672 ORTHO05D003038 3.8e-08 62.0 129 33.3
Eucgr.J03010 Eucalyptus grandis HOM05D005672 ORTHO05D003038 5.0e-08 61.6 126 31.7
Gohir.A09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 5.0e-08 61.6 130 30.8
Gorai.006G099200 Gossypium raimondii HOM05D005672 ORTHO05D003038 5.0e-08 61.6 131 29.8
Thhalv10019821m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 6.5e-08 61.2 130 32.3
CsaV3_7G033060 Cucumis sativus L. HOM05D005672 ORTHO05D003038 8.5e-08 60.8 135 31.1
Duzib192G0281 Durio zibethinus HOM05D005672 ORTHO05D003038 1.1e-07 60.5 127 29.1
ECA232G2097 Erigeron canadensis HOM05D005672 ORTHO05D003038 1.1e-07 60.5 139 30.9
Eucgr.J03009 Eucalyptus grandis HOM05D005672 ORTHO05D003038 1.1e-07 60.5 48 50.0
Gohir.D09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 1.1e-07 60.5 131 29.8
Gorai.006G099100 Gossypium raimondii HOM05D005672 ORTHO05D003038 1.1e-07 60.5 130 30.0
Prupe.3G072700 Prunus persica HOM05D005672 ORTHO05D003038 1.1e-07 60.5 129 33.3
Thhalv10019701m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 1.5e-07 60.1 104 31.7
Gohir.D09G083500 Gossypium hirsutum HOM05D005672 ORTHO05D003038 1.5e-07 60.1 130 30.0
PSO648G0129 Papaver somniferum HOM05D007482 ORTHO05D003038 1.9e-07 59.7 129 31.8
PGR102G1467 Punica granatum HOM05D005672 ORTHO05D003038 1.9e-07 59.7 123 30.9
Prupe.3G073000 Prunus persica HOM05D005672 ORTHO05D003038 2.5e-07 59.3 127 29.9
ClCG09G002230 Citrullus lanatus HOM05D005672 ORTHO05D003038 3.2e-07 58.9 127 29.1
BcaC05g25168 Brassica carinata HOM05D007482 ORTHO05D003038 4.2e-07 58.5 109 37.6
PSO339G4707 Papaver somniferum HOM05D007482 ORTHO05D003038 4.2e-07 58.5 125 33.6
Prupe.3G072900 Prunus persica HOM05D005672 ORTHO05D003038 4.2e-07 58.5 128 31.2
Prupe.3G073100 Prunus persica HOM05D005672 ORTHO05D003038 4.2e-07 58.5 41 58.5
Aqoxy7G01810 Aquilegia oxysepala HOM05D005672 ORTHO05D003038 5.5e-07 58.2 130 29.2
Actinidia02490 Actinidia chinensis HOM05D005672 ORTHO05D003038 9.4e-07 57.4 129 34.9
COL.COLO4_30353 Corchorus olitorius HOM05D005672 ORTHO05D003038 1.2e-06 57.0 51 47.1
Dinv30521 Davidia involucrata HOM05D005672 ORTHO05D003038 1.2e-06 57.0 48 47.9
Manes.04G121900 Manihot esculenta HOM05D005672 ORTHO05D003038 1.2e-06 57.0 42 54.8
Manes.04G122000 Manihot esculenta HOM05D005672 ORTHO05D003038 1.2e-06 57.0 42 54.8
Ciclev10027568m.g Citrus clementina HOM05D005672 ORTHO05D003038 1.6e-06 56.6 129 32.6
Nitab4.5_0002327g0030 Nicotiana tabacum HOM05D005672 ORTHO05D003038 1.6e-06 56.6 135 30.4
Gohir.A09G083700 Gossypium hirsutum HOM05D005672 ORTHO05D003038 2.1e-06 56.2 101 31.7
PGR031G0360 Punica granatum HOM05D005672 ORTHO05D003038 2.1e-06 56.2 41 56.1
PGR031G0657 Punica granatum HOM05D005672 ORTHO05D003038 2.1e-06 56.2 41 56.1
PGR031G3744 Punica granatum HOM05D005672 ORTHO05D003038 2.1e-06 56.2 41 56.1
Manes.04G122100 Manihot esculenta HOM05D005672 ORTHO05D003038 3.6e-06 55.5 42 52.4
Migut.I00857 Erythranthe guttata HOM05D005672 ORTHO05D003038 4.7e-06 55.1 131 33.6
Nitab4.5_0000351g0210 Nicotiana tabacum HOM05D005672 ORTHO05D003038 6.1e-06 54.7 130 31.5
Hund25654 Selenicereus undatus HOM05D005672 ORTHO05D003038 6.1e-06 54.7 130 28.5


User provided reference genes

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