Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p46780 Brassica napus HOM05D003570 ORTHO05D004207 4.5e-304 1047.3 620 100.0
BcaC07g41664 Brassica carinata HOM05D003570 ORTHO05D004207 2.6e-280 968.4 629 91.9
BraA09t41684Z Brassica rapa HOM05D003570 ORTHO05D004207 1.1e-278 963.0 605 92.7
A09p63350 Brassica napus HOM05D003570 ORTHO05D004207 3.6e-277 958.0 607 95.2
BolC8t52217H Brassica oleracea HOM05D003570 ORTHO05D004207 7.5e-275 950.3 608 90.8
Sp1g11650 Schrenkiella parvula HOM05D003570 ORTHO05D004207 9.6e-230 800.4 614 77.0
Thhalv10007079m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 9.3e-225 783.9 616 80.2
AL1G24790 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 4.4e-219 765.0 603 74.5
AT1G13120 Arabidopsis thaliana HOM05D003570 ORTHO05D004207 1.3e-213 746.9 590 75.6
CARHR013490 Cardamine hirsuta HOM05D003570 ORTHO05D004207 2.1e-208 729.6 615 72.5
Carub.0001s1286 Capsella rubella HOM05D003570 ORTHO05D004207 1.2e-203 713.8 612 70.1
Aa31LG1G1680 Aethionema arabicum HOM05D003570 ORTHO05D004207 4.1e-164 582.4 624 61.5
THA.LOC104805269 Tarenaya hassleriana HOM05D003570 ORTHO05D004207 1.2e-163 580.9 651 57.1
AL6G47680 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 2.7e-139 500.0 607 53.4
CiPaw.06G064800 Carya illinoinensis HOM05D003570 ORTHO05D004207 2.0e-131 473.8 646 51.1
Cpa.g.sc13.88 Carica papaya HOM05D003570 ORTHO05D004207 8.6e-130 468.4 661 47.0
COL.COLO4_23499 Corchorus olitorius HOM05D003570 ORTHO05D004207 4.7e-128 462.6 651 47.2
Thecc.02G265200 Theobroma cacao HOM05D003570 ORTHO05D004207 1.1e-127 461.5 653 48.1
Duzib248G0757 Durio zibethinus HOM05D003570 ORTHO05D004207 1.4e-127 461.1 652 45.9
TWI36G1196 Tripterygium wilfordii HOM05D003570 ORTHO05D004207 2.2e-125 453.8 630 46.3
Ciclev10030923m.g Citrus clementina HOM05D003570 ORTHO05D004207 6.0e-123 445.7 660 45.0
Potri.008G183500 Populus trichocarpa HOM05D003570 ORTHO05D004207 1.3e-122 444.5 622 49.4
Haze_12279 Corylus avellana HOM05D003570 ORTHO05D004207 2.5e-121 440.3 661 44.9
Gorai.012G173500 Gossypium raimondii HOM05D003570 ORTHO05D004207 7.3e-121 438.7 640 47.3
Gohir.D04G180400 Gossypium hirsutum HOM05D003570 ORTHO05D004207 2.8e-120 436.8 640 45.8
Gohir.A04G137200 Gossypium hirsutum HOM05D003570 ORTHO05D004207 2.3e-119 433.7 643 47.1
Eucgr.B03244 Eucalyptus grandis HOM05D003570 ORTHO05D004207 5.2e-119 432.6 652 44.8
Prupe.1G241900 Prunus persica HOM05D003570 ORTHO05D004207 1.3e-114 417.9 622 49.0
PGR102G1250 Punica granatum HOM05D003570 ORTHO05D004207 5.6e-113 412.5 640 42.7
QL03p056574 Quercus lobata HOM05D003570 ORTHO05D004207 6.2e-112 409.1 640 44.5
Manes.13G020900 Manihot esculenta HOM05D003570 ORTHO05D004207 1.4e-111 407.9 618 43.5
arahy.Tifrunner.gnm1.ann1.8897EQ Arachis hypogaea HOM05D003570 ORTHO05D004207 5.2e-111 406.0 623 41.1
arahy.Tifrunner.gnm1.ann1.I1BHDP Arachis hypogaea HOM05D003570 ORTHO05D004207 1.2e-110 404.8 625 41.4
TAR622G0746 Trochodendron aralioides HOM05D003570 ORTHO05D004207 3.4e-110 403.3 664 43.5
VMungo1383G2895 Vigna mungo HOM05D003570 ORTHO05D004207 5.8e-110 402.5 619 44.3
Phvul.001G256000 Phaseolus vulgaris HOM05D003570 ORTHO05D004207 2.9e-109 400.2 630 45.9
GSVIVG01000572001 Vitis vinifera HOM05D003570 ORTHO05D004207 3.8e-109 399.8 665 43.6
Psat5g092360 Pisum sativum HOM05D003570 ORTHO05D004207 8.4e-109 398.7 623 43.3
Lj6g0027950 Lotus japonicus HOM05D003570 ORTHO05D004207 1.1e-108 398.3 634 44.5
RcHm_v2.0_Chr4g0432651 Rosa chinensis HOM05D003570 ORTHO05D004207 1.4e-108 397.9 625 44.8
Thhalv10001133m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 3.2e-108 396.7 559 47.2
Nn4g22548 Nelumbo nucifera HOM05D003570 ORTHO05D004207 3.5e-107 393.3 666 42.5
FAN12G2286 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.0e-106 391.7 626 43.5
Glyma.11G244100 Glycine max HOM05D003570 ORTHO05D004207 2.3e-106 390.6 628 42.5
Lj4g0018208 Lotus japonicus HOM05D003570 ORTHO05D004207 3.0e-106 390.2 626 44.7
FvH4_4g25360 Fragaria vesca HOM05D003570 ORTHO05D004207 3.9e-106 389.8 626 43.5
Atru.chr11.2174 Acer truncatum HOM05D003570 ORTHO05D004207 5.1e-106 389.4 645 43.7
Ca_25131_v3 Cicer arietinum L. HOM05D001269 ORTHO05D001083 6.6e-106 389.0 619 41.5
Actinidia37450 Actinidia chinensis HOM05D003570 ORTHO05D004207 8.7e-106 388.7 659 41.4
CANSAT11G1164 Cannabis sativa HOM05D003570 ORTHO05D004207 3.3e-105 386.7 648 39.7
FAN22G0389 Fragaria x ananassa HOM05D003570 ORTHO05D004207 4.3e-105 386.3 625 43.4
FAN07G1326 Fragaria x ananassa HOM05D003570 ORTHO05D004207 7.3e-105 385.6 654 43.6
Nitab4.5_0002373g0110 Nicotiana tabacum HOM05D003570 ORTHO05D004207 7.3e-105 385.6 646 39.8
CsaV3_5G030790 Cucumis sativus L. HOM05D003570 ORTHO05D004207 8.1e-104 382.1 653 41.5
Sc04g0009680 Simmondsia chinensis HOM05D003570 ORTHO05D004207 2.6e-102 377.1 644 42.1
Sopen05g008710 Solanum pennellii HOM05D003570 ORTHO05D004207 1.7e-101 374.4 663 41.2
ClCG05G026050 Citrullus lanatus HOM05D003570 ORTHO05D004207 1.9e-100 370.9 652 42.8
COL.COLO4_27904 Corchorus olitorius HOM05D003570 ORTHO05D004207 4.2e-100 369.8 662 38.8
FAN17G0862 Fragaria x ananassa HOM05D003570 ORTHO05D004207 4.2e-100 369.8 631 39.6
Peaxi162Scf00128g00550 Petunia axillaris HOM05D003570 ORTHO05D004207 1.6e-99 367.9 636 43.9
CiPaw.02G032100 Carya illinoinensis HOM05D003570 ORTHO05D004207 3.9e-98 363.2 615 46.5
MBI04_g13681_MAGBIO Magnolia biondii HOM05D003570 ORTHO05D004207 1.5e-97 361.3 616 44.5
TPR.G35967 Trifolium pratense HOM05D003570 ORTHO05D004207 1.9e-97 360.9 604 41.4
MELO3C011924.2 Cucumis melo HOM05D003570 ORTHO05D004207 2.5e-97 360.5 675 41.0
CAN.G1572.8 Capsicum annuum HOM05D003570 ORTHO05D004207 4.3e-97 359.8 661 39.9
MD13G1104500 Malus domestica HOM05D003570 ORTHO05D004207 5.6e-97 359.4 590 46.3
AUR62024231 Chenopodium quinoa HOM05D003570 ORTHO05D004207 8.1e-96 355.5 661 41.1
Sed0006332 Sechium edule HOM05D003570 ORTHO05D004207 1.4e-95 354.8 596 42.1
Medtr3g086460 Medicago truncatula HOM05D003570 ORTHO05D004207 1.8e-95 354.4 611 40.1
Lalb_Chr08g0230861 Lupinus albus HOM05D003570 ORTHO05D004207 2.9e-93 347.1 515 45.8
PSO339G2835 Papaver somniferum HOM05D003570 ORTHO05D004207 5.5e-92 342.8 647 42.0
PSO063G4933 Papaver somniferum HOM05D003570 ORTHO05D004207 1.3e-90 338.2 657 40.8
QL03p056953 Quercus lobata HOM05D003570 ORTHO05D004207 3.9e-90 336.7 622 40.8
Oeu038645.2 Olea europaea HOM05D003570 ORTHO05D004207 5.1e-90 336.3 655 42.4
MSTRG.553 Avicennia marina HOM05D003570 ORTHO05D004207 8.7e-90 335.5 623 41.4
Nitab4.5_0004117g0010 Nicotiana tabacum HOM05D003570 ORTHO05D004207 3.1e-87 327.0 642 38.9
DCAR_026498 Daucus carota HOM05D003570 ORTHO05D004207 5.3e-87 326.2 636 40.9
ATR0824G009 Amborella trichopoda HOM05D003570 ORTHO05D004207 4.9e-85 319.7 624 41.5
SGA_v2.0_scaffold22G09799 Striga asiatica HOM05D003570 ORTHO05D004207 1.9e-84 317.8 620 40.6
HanXRQChr08g0208421 Helianthus annuus HOM05D003570 ORTHO05D004207 3.2e-84 317.0 639 39.4
AUR62005511 Chenopodium quinoa HOM05D003570 ORTHO05D004207 5.5e-84 316.2 636 39.9
Nitab4.5_0001978g0070 Nicotiana tabacum HOM05D003570 ORTHO05D004207 5.5e-84 316.2 703 35.8
Migut.K00625 Erythranthe guttata HOM05D003570 ORTHO05D004207 7.1e-84 315.8 619 41.0
Aqoxy7G03799 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 1.2e-83 315.1 642 41.6
Cc11_g16040 Coffea canephora HOM05D003570 ORTHO05D004207 5.7e-81 306.2 619 40.1
Lsat_1_v5_gn_0_32260 Lactuca sativa HOM05D003570 ORTHO05D004207 5.7e-81 306.2 625 40.6
BolC4t26878H Brassica oleracea HOM05D003570 ORTHO05D004207 2.4e-79 300.8 195 85.1
C04p53310 Brassica napus HOM05D003570 ORTHO05D004207 1.5e-73 281.6 200 80.0
Os02g0596100 Oryza sativa ssp. japonica HOM05D003570 ORTHO05D004207 5.7e-73 279.6 626 41.4
Lj6A815G40 Lonicera japonica HOM05D003570 ORTHO05D004207 1.6e-72 278.1 477 41.3
EL10As2g23162 Beta vulgaris HOM05D003570 ORTHO05D004207 1.5e-70 271.6 492 43.5
ECA233G5166 Erigeron canadensis HOM05D002671 ORTHO05D002985 1.5e-70 271.6 561 38.5
A07p19900 Brassica napus HOM05D003570 ORTHO05D004207 5.9e-70 269.6 196 77.6
Zm00001eb062020 Zea mays HOM05D003570 ORTHO05D004207 1.7e-69 268.1 547 40.4
Zm00001eb212370 Zea mays HOM05D003570 ORTHO05D004207 8.5e-69 265.8 551 42.1
BcaC02g08536 Brassica carinata HOM05D003570 ORTHO05D004207 1.9e-68 264.6 161 87.0
SEGI_05718 Sequoiadendron giganteum HOM05D003570 ORTHO05D004207 9.4e-68 262.3 649 38.2
PSO063G3251 Papaver somniferum HOM05D003570 ORTHO05D004207 4.6e-67 260.0 653 32.5
Sabra08G0139700 Salix brachista HOM05D003570 ORTHO05D004207 4.6e-67 260.0 315 46.7
Dinv11043 Davidia involucrata HOM05D003570 ORTHO05D004207 7.9e-67 259.2 452 45.1
SHI04269 Sapria himalayana HOM05D003570 ORTHO05D004207 5.1e-66 256.5 525 36.8
BolC5t29767H Brassica oleracea HOM05D003570 ORTHO05D004207 5.3e-63 246.5 264 54.9
A07p18160 Brassica napus HOM05D003570 ORTHO05D004207 1.4e-60 238.4 194 68.6
BraA01t00580Z Brassica rapa HOM05D003570 ORTHO05D004207 1.4e-60 238.4 194 68.6
BcaC05g25085 Brassica carinata HOM05D003570 ORTHO05D004207 2.7e-59 234.2 211 65.4
C04p53220 Brassica napus HOM05D003570 ORTHO05D004207 6.1e-59 233.0 150 83.3
BcaC06g34341 Brassica carinata HOM05D003570 ORTHO05D004207 1.0e-58 232.3 192 68.2
Pp3c9_21420 Physcomitrium patens HOM05D003570 ORTHO05D004207 3.9e-58 230.3 643 33.4
BcaC05g25084 Brassica carinata HOM05D003570 ORTHO05D004207 8.8e-58 229.2 225 57.3
PSO754G0035 Papaver somniferum HOM05D003570 ORTHO05D004207 8.8e-58 229.2 325 41.5
PSO063G1535 Papaver somniferum HOM05D003570 ORTHO05D004207 5.7e-57 226.5 311 41.8
Lj3A151T25 Lonicera japonica HOM05D003570 ORTHO05D004207 7.7e-54 216.1 324 40.1
vmacro17618 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 1.0e-53 215.7 536 34.3
Rhsim12G0108000 Rhododendron simsii HOM05D003570 ORTHO05D004207 3.0e-50 204.1 292 41.1
Hma1.2p1_1533F.1_g289360 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 2.6e-49 201.1 280 40.0
C05p10220 Brassica napus HOM05D003570 ORTHO05D004207 9.7e-49 199.1 260 48.8
AT4G05523 Arabidopsis thaliana HOM05D003570 ORTHO05D004207 1.8e-47 194.9 213 56.3
Oeu038646.1 Olea europaea HOM05D003570 ORTHO05D004207 7.0e-47 193.0 418 34.7
PGSC0003DMG400016968 Solanum tuberosum HOM05D003570 ORTHO05D004207 9.1e-47 192.6 277 39.7
Aqoxy5G03688 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 1.2e-46 192.2 237 45.1
Rhsim12G0107900 Rhododendron simsii HOM05D003570 ORTHO05D004207 5.9e-46 189.9 236 46.6
FAN08G0154 Fragaria x ananassa HOM05D003570 ORTHO05D004207 5.0e-45 186.8 446 36.5
AL2G22720 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 1.1e-44 185.7 128 75.0
vmacro16171 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 5.5e-44 183.3 259 40.9
Aqoxy1G03220 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 1.8e-42 178.3 303 37.6
Mapoly0004s0250 Marchantia polymorpha HOM05D003570 ORTHO05D004207 5.2e-42 176.8 644 33.4
vmacro16170 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 8.8e-42 176.0 229 44.1
Nitab4.5_0000229g0040 Nicotiana tabacum HOM05D003570 ORTHO05D004207 4.4e-41 173.7 236 42.8
SMO367G0645 Selaginella moellendorffii HOM05D003570 ORTHO05D004207 2.4e-39 167.9 657 28.5
Nitab4.5_0000229g0020 Nicotiana tabacum HOM05D003570 ORTHO05D004207 4.1e-39 167.2 236 41.9
AL2G22730 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 1.3e-37 162.2 112 72.3
Dinv15203 Davidia involucrata HOM05D003570 ORTHO05D004207 3.8e-37 160.6 226 39.4
CBR_g38118 Chara braunii HOM05D003570 ORTHO05D004207 4.7e-35 153.7 563 35.7
vmacro16173 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 2.8e-32 144.4 254 35.0
CSS0031984 Camellia sinensis var. sinensis HOM05D003570 ORTHO05D004207 3.7e-32 144.1 244 36.9
vmacro16172 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 1.8e-31 141.7 292 33.6
C07p30160 Brassica napus HOM05D003570 ORTHO05D004207 2.7e-30 137.9 71 91.5
Sp2g10400 Schrenkiella parvula HOM05D003570 ORTHO05D004207 5.0e-29 133.7 169 49.7
CDE06G1553 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 3.3e-28 131.0 178 37.6
Haze_11814 Corylus avellana HOM05D001314 ORTHO05D001165 4.3e-28 130.6 184 41.8
FAN13G1935 Fragaria x ananassa HOM05D003570 ORTHO05D004207 2.8e-27 127.9 362 39.5
Haze_20779 Corylus avellana HOM05D003570 ORTHO05D004207 1.4e-26 125.6 231 35.9
unitig_22.g6426 Utricularia gibba HOM05D003570 ORTHO05D004207 3.0e-26 124.4 181 38.7
C03p39130 Brassica napus HOM05D003570 ORTHO05D004207 1.2e-25 122.5 101 71.3
Aqoxy5G03687 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 7.5e-25 119.8 253 38.3
BolC4t26886H Brassica oleracea HOM05D003570 ORTHO05D004207 7.5e-25 119.8 65 87.7
CARHR253470 Cardamine hirsuta HOM05D003570 ORTHO05D004207 2.9e-24 117.9 150 54.0
C07p30170 Brassica napus HOM05D003570 ORTHO05D004207 6.4e-24 116.7 70 91.4
Cre06.g300900 Chlamydomonas reinhardtii HOM05D003570 ORTHO05D004207 8.3e-24 116.3 290 29.3
CSS0045431 Camellia sinensis var. sinensis HOM05D003570 ORTHO05D004207 7.8e-22 109.8 148 46.6
BcaC02g12092 Brassica carinata HOM05D003570 ORTHO05D004207 1.0e-21 109.4 56 91.1
Hma1.2p1_1533F.1_g289350 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 2.5e-20 104.8 150 40.7
Lj3A151T24 Lonicera japonica HOM05D003570 ORTHO05D004207 1.2e-19 102.4 126 46.0
C02p46270 Brassica napus HOM05D003570 ORTHO05D027618 2.8e-19 101.3 213 40.8
unitig_22.g6425 Utricularia gibba HOM05D003570 ORTHO05D004207 2.8e-19 101.3 179 36.3
BraA02t07950Z Brassica rapa HOM05D003570 ORTHO05D027618 1.0e-18 99.4 214 41.6
A02p29200 Brassica napus HOM05D003570 ORTHO05D027618 3.1e-18 97.8 215 40.5
CDE06G0651 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 1.2e-17 95.9 251 39.0
EL10Ac8g19584 Beta vulgaris HOM05D003570 ORTHO05D004207 1.5e-17 95.5 119 42.9
MCO05G059 Micromonas commoda HOM05D003570 ORTHO05D004207 5.8e-17 93.6 313 26.5
TAR374G0931 Trochodendron aralioides HOM05D003570 ORTHO05D004207 1.7e-16 92.0 94 51.1
AagrBONN_evm.TU.Sc2ySwM_362.2178 Anthoceros agrestis HOM05D003570 ORTHO05D004207 6.4e-16 90.1 170 30.0
Sopen04g013730 Solanum pennellii HOM05D003570 ORTHO05D004207 1.1e-15 89.4 122 37.7
FAN08G3485 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.9e-15 88.6 116 41.4
Medtr7g034350 Medicago truncatula HOM05D003570 ORTHO05D004207 9.2e-15 86.3 201 31.8
TAR374G0522 Trochodendron aralioides HOM05D003570 ORTHO05D004207 8.6e-13 79.7 93 45.2
AagrBONN_evm.TU.Sc2ySwM_344.4464 Anthoceros agrestis HOM05D003570 ORTHO05D004207 1.1e-12 79.3 345 32.2
Glyma.18G013000 Glycine max HOM05D003570 ORTHO05D004207 1.9e-12 78.6 86 46.5
BcaC03g16752 Brassica carinata HOM05D003570 ORTHO05D027618 7.3e-12 76.6 212 32.1
EL10As2g23164 Beta vulgaris HOM05D003570 ORTHO05D004207 8.9e-10 69.7 160 35.0
MD05G1151500 Malus domestica HOM05D003570 ORTHO05D004207 2.2e-08 65.1 49 63.3
FvH4_5g15750 Fragaria vesca HOM05D003570 ORTHO05D004207 3.7e-08 64.3 57 54.4
PSO063G3896 Papaver somniferum HOM05D003570 ORTHO05D004207 8.3e-08 63.2 232 33.2
FAN18G0384 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.1e-07 62.8 150 32.0
Hma1.2p1_0054F.1_g030990 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 1.4e-07 62.4 62 41.9
FvH4_5g15741 Fragaria vesca HOM05D003570 ORTHO05D004207 2.4e-07 61.6 148 31.8
EL10Ac1g01653 Beta vulgaris HOM05D003570 ORTHO05D004207 9.2e-07 59.7 49 55.1
CDE06G1606 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 2.1e-06 58.5 72 38.9
Actinidia15111 Actinidia chinensis HOM05D003570 ORTHO05D004207 3.5e-06 57.8 67 40.3
BcaC05g25083 Brassica carinata HOM05D003570 ORTHO05D004207 4.6e-06 57.4 59 52.5


User provided reference genes

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