Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g41648 Brassica carinata HOM05D001326 ORTHO05D002471 7.0e-44 180.6 121 100.0
C08p46490 Brassica napus HOM05D001326 ORTHO05D002471 7.0e-44 180.6 121 100.0
BraA09t41660Z Brassica rapa HOM05D001326 ORTHO05D002471 1.7e-42 176.0 120 95.8
A09p63030 Brassica napus HOM05D001326 ORTHO05D002471 4.6e-19 98.2 104 55.8
A09p63070 Brassica napus HOM05D001326 ORTHO05D002471 4.6e-19 98.2 104 55.8
Ah.01g009800 Amaranthus hybridus HOM05D001326 ORTHO05D002471 6.2e-16 87.8 107 43.9
AT5G19320 Arabidopsis thaliana HOM05D001326 ORTHO05D002471 1.1e-15 87.0 53 88.7
Sp6g25090 Schrenkiella parvula HOM05D001326 ORTHO05D002471 1.1e-15 87.0 53 88.7
BcaC04g18578 Brassica carinata HOM05D001326 ORTHO05D002471 1.8e-15 86.3 53 86.8
C09p56950 Brassica napus HOM05D002203 ORTHO05D002647 1.8e-15 86.3 53 86.8
BraA10t44106Z Brassica rapa HOM05D002203 ORTHO05D002647 1.8e-15 86.3 53 86.8
Thhalv10013175m.g Eutrema salsugineum HOM05D001326 ORTHO05D002471 1.8e-15 86.3 53 88.7
A10p20360 Brassica napus HOM05D001326 ORTHO05D002471 2.3e-15 85.9 53 84.9
Carub.0006s1766 Capsella rubella HOM05D001326 ORTHO05D002471 3.1e-15 85.5 53 88.7
AL6G30810 Arabidopsis lyrata HOM05D001326 ORTHO05D002471 5.2e-15 84.7 52 88.5
BolC9t58549H Brassica oleracea HOM05D002203 ORTHO05D002647 6.8e-15 84.3 53 84.9
CARHR193640 Cardamine hirsuta HOM05D001326 ORTHO05D002471 6.8e-15 84.3 53 86.8
BcaB08g36583 Brassica carinata HOM05D001326 ORTHO05D002471 8.9e-15 84.0 53 86.8
Rhsim02G0022400 Rhododendron simsii HOM05D001326 ORTHO05D002471 1.5e-14 83.2 89 50.6
FAN24G0915 Fragaria x ananassa HOM05D001326 ORTHO05D002471 2.0e-14 82.8 120 51.7
Aa31LG11G10350 Aethionema arabicum HOM05D001326 ORTHO05D002471 3.4e-14 82.0 53 81.1
SHI00412 Sapria himalayana HOM05D001326 ORTHO05D002471 1.3e-13 80.1 101 41.6
BNapus_Darmor_BZH_scaffold_38p02620 Brassica napus HOM05D001326 ORTHO05D002471 5.4e-12 74.7 60 70.0
BcaC03g13664 Brassica carinata HOM05D001326 ORTHO05D002471 7.1e-12 74.3 60 70.0
arahy.Tifrunner.gnm1.ann1.5GQC5T Arachis hypogaea HOM05D001326 ORTHO05D002471 1.6e-11 73.2 107 41.1
Pp3c7_9140 Physcomitrium patens HOM05D001326 ORTHO05D002471 3.5e-11 72.0 107 57.0
GSVIVG01014452001 Vitis vinifera HOM05D001326 ORTHO05D002471 3.5e-11 72.0 50 74.0
PSO832G2839 Papaver somniferum HOM05D001326 ORTHO05D002471 6.0e-11 71.2 107 40.2
GSVIVG01017922001 Vitis vinifera HOM05D001326 ORTHO05D002471 6.0e-11 71.2 50 72.0
FAN12G0995 Fragaria x ananassa HOM05D001326 ORTHO05D002471 1.3e-10 70.1 104 60.6
Solyc01g079680.3 Solanum lycopersicum HOM05D001326 ORTHO05D002471 1.3e-10 70.1 50 74.0
PGSC0003DMG400009029 Solanum tuberosum HOM05D001326 ORTHO05D002471 1.3e-10 70.1 50 74.0
GSVIVG01011081001 Vitis vinifera HOM05D001326 ORTHO05D002471 1.3e-10 70.1 52 73.1
Duzib151G0592 Durio zibethinus HOM05D001326 ORTHO05D002471 1.7e-10 69.7 52 69.2
Gohir.A10G117900 Gossypium hirsutum HOM05D001326 ORTHO05D002471 2.3e-10 69.3 52 69.2
Potri.002G052900 Populus trichocarpa HOM05D001326 ORTHO05D002471 2.3e-10 69.3 52 67.3
Sabra02G0043000 Salix brachista HOM05D001326 ORTHO05D002471 3.0e-10 68.9 50 68.0
Sed0014120 Sechium edule HOM05D001326 ORTHO05D002471 3.0e-10 68.9 52 67.3
CAN.G69.8 Capsicum annuum HOM05D001326 ORTHO05D002471 3.9e-10 68.6 53 69.8
Nn1g02230 Nelumbo nucifera HOM05D001326 ORTHO05D002471 3.9e-10 68.6 52 69.2
Ciclev10019619m.g Citrus clementina HOM05D001326 ORTHO05D002471 5.1e-10 68.2 52 67.3
unitig_32.g11732 Utricularia gibba HOM05D001326 ORTHO05D002471 5.1e-10 68.2 86 45.3
CiPaw.07G091800 Carya illinoinensis HOM05D001326 ORTHO05D002471 6.6e-10 67.8 52 65.4
Dinv44506 Davidia involucrata HOM05D001326 ORTHO05D002471 6.6e-10 67.8 50 70.0
Nitab4.5_0000144g0110 Nicotiana tabacum HOM05D001326 ORTHO05D002471 6.6e-10 67.8 53 69.8
Aqoxy2G03334 Aquilegia oxysepala HOM05D001326 ORTHO05D002471 8.6e-10 67.4 49 67.3
Cc03_g03410 Coffea canephora HOM05D001326 ORTHO05D002471 8.6e-10 67.4 52 71.2
Nitab4.5_0000180g0050 Nicotiana tabacum HOM05D001326 ORTHO05D002471 8.6e-10 67.4 53 69.8
Sc13g0004180 Simmondsia chinensis HOM05D001326 ORTHO05D002471 8.6e-10 67.4 52 69.2
Sopen01g031460 Solanum pennellii HOM05D001326 ORTHO05D002471 8.6e-10 67.4 50 70.0
Actinidia36982 Actinidia chinensis HOM05D001326 ORTHO05D002471 1.1e-09 67.0 50 68.0
Sc19g0004340 Simmondsia chinensis HOM05D001326 ORTHO05D002471 1.1e-09 67.0 53 64.2
THA.LOC104818782 Tarenaya hassleriana HOM05D001326 ORTHO05D002471 1.1e-09 67.0 53 69.8
Gorai.011G166200 Gossypium raimondii HOM05D001326 ORTHO05D002471 1.5e-09 66.6 52 67.3
CSS0018538 Camellia sinensis var. sinensis HOM05D001326 ORTHO05D002471 1.9e-09 66.2 52 65.4
Cc01_g19460 Coffea canephora HOM05D001326 ORTHO05D002471 1.9e-09 66.2 52 67.3
Migut.G00314 Erythranthe guttata HOM05D001326 ORTHO05D002471 1.9e-09 66.2 52 65.4
Lj6P597T53 Lonicera japonica HOM05D001326 ORTHO05D002471 1.9e-09 66.2 52 65.4
Manes.05G076600 Manihot esculenta HOM05D001326 ORTHO05D002471 2.5e-09 65.9 53 64.2
TWI14G0154 Tripterygium wilfordii HOM05D001326 ORTHO05D002471 2.5e-09 65.9 52 65.4
TAR362G0568 Trochodendron aralioides HOM05D001326 ORTHO05D002471 2.5e-09 65.9 52 67.3
ClCG09G007560 Citrullus lanatus HOM05D001326 ORTHO05D002471 3.3e-09 65.5 53 66.0
Oeu028069.1 Olea europaea HOM05D001326 ORTHO05D002471 4.3e-09 65.1 53 62.3
Peaxi162Scf00437g00611 Petunia axillaris HOM05D001326 ORTHO05D002471 5.6e-09 64.7 53 66.0
Peaxi162Scf01607g00114 Petunia axillaris HOM05D001326 ORTHO05D002471 5.6e-09 64.7 52 67.3
TAR633G1687 Trochodendron aralioides HOM05D001326 ORTHO05D002471 5.6e-09 64.7 52 67.3
MSTRG.10000 Avicennia marina HOM05D001326 ORTHO05D002471 7.3e-09 64.3 52 61.5
COL.COLO4_09095 Corchorus olitorius HOM05D001326 ORTHO05D002471 7.3e-09 64.3 52 63.5
MELO3C015767.2 Cucumis melo HOM05D001326 ORTHO05D002471 7.3e-09 64.3 53 64.2
Dinv32934 Davidia involucrata HOM05D001326 ORTHO05D002471 7.3e-09 64.3 52 61.5
Eucgr.H01478 Eucalyptus grandis HOM05D001326 ORTHO05D002471 7.3e-09 64.3 52 65.4
Gohir.A08G067050 Gossypium hirsutum HOM05D001326 ORTHO05D002471 7.3e-09 64.3 53 60.4
Oeu018050.1 Olea europaea HOM05D001326 ORTHO05D002471 7.3e-09 64.3 52 65.4
HPP92_020627 Vanilla planifolia HOM05D001326 ORTHO05D002471 7.3e-09 64.3 89 41.6
Dinv34753 Davidia involucrata HOM05D001326 ORTHO05D002471 9.5e-09 63.9 52 63.5
Eucgr.H03559 Eucalyptus grandis HOM05D001326 ORTHO05D002471 9.5e-09 63.9 49 67.3
Gohir.D08G075600 Gossypium hirsutum HOM05D001326 ORTHO05D002471 9.5e-09 63.9 53 60.4
Gorai.004G079900 Gossypium raimondii HOM05D001326 ORTHO05D002471 9.5e-09 63.9 53 60.4
Lj5g0010430 Lotus japonicus HOM05D001326 ORTHO05D002471 9.5e-09 63.9 52 59.6
PGR119G0688 Punica granatum HOM05D001326 ORTHO05D002471 9.5e-09 63.9 50 68.0
EL10Ac8g20247 Beta vulgaris HOM05D001326 ORTHO05D002471 1.2e-08 63.5 52 63.5
Glyma.02G147200 Glycine max HOM05D001326 ORTHO05D002471 1.2e-08 63.5 52 57.7
Oeu020816.2 Olea europaea HOM05D001326 ORTHO05D002471 1.2e-08 63.5 50 64.0
Sabra05G0159700 Salix brachista HOM05D001326 ORTHO05D002471 1.2e-08 63.5 52 63.5
SGA_v2.0_scaffold1G00474 Striga asiatica HOM05D001326 ORTHO05D002471 1.2e-08 63.5 52 61.5
SGA_v2.0_scaffold237G43794 Striga asiatica HOM05D001326 ORTHO05D002471 1.2e-08 63.5 52 63.5
MSTRG.4012 Avicennia marina HOM05D001326 ORTHO05D002471 1.6e-08 63.2 52 63.5
Cfa006141 Carpinus fangiana HOM05D001326 ORTHO05D002471 1.6e-08 63.2 52 61.5
CsaV3_7G027560 Cucumis sativus L. HOM05D001326 ORTHO05D002471 1.6e-08 63.2 53 64.2
Duzib133G0175 Durio zibethinus HOM05D001326 ORTHO05D002471 1.6e-08 63.2 52 61.5
TWI59G0477 Tripterygium wilfordii HOM05D001326 ORTHO05D002471 1.6e-08 63.2 52 63.5
Ca_09756_v3 Cicer arietinum L. HOM05D001326 ORTHO05D002471 2.1e-08 62.8 52 59.6
Glyma.10G026700 Glycine max HOM05D001326 ORTHO05D002471 2.1e-08 62.8 52 57.7
Gohir.A08G045130 Gossypium hirsutum HOM05D001326 ORTHO05D002471 2.1e-08 62.8 52 61.5
Gorai.004G055500 Gossypium raimondii HOM05D001326 ORTHO05D002471 2.1e-08 62.8 52 61.5
Phvul.007G172200 Phaseolus vulgaris HOM05D001326 ORTHO05D002471 2.1e-08 62.8 52 57.7
Psat6g060120 Pisum sativum HOM05D001326 ORTHO05D002471 2.1e-08 62.8 52 59.6
Zm00001eb244490 Zea mays HOM05D001326 ORTHO05D002471 2.1e-08 62.8 94 41.5
Haze_04709 Corylus avellana HOM05D001326 ORTHO05D002471 2.8e-08 62.4 52 59.6
Potri.005G209600 Populus trichocarpa HOM05D001326 ORTHO05D002471 2.8e-08 62.4 52 61.5
Atru.chr5.1438 Acer truncatum HOM05D001326 ORTHO05D002471 3.6e-08 62.0 52 61.5
Nitab4.5_0008435g0020 Nicotiana tabacum HOM05D001326 ORTHO05D002471 3.6e-08 62.0 52 63.5
TPR.G9119 Trifolium pratense HOM05D001326 ORTHO05D002471 3.6e-08 62.0 52 61.5
ECA247G2530 Erigeron canadensis HOM05D001326 ORTHO05D002471 4.7e-08 61.6 49 67.3
RcHm_v2.0_Chr6g0291031 Rosa chinensis HOM05D001326 ORTHO05D002471 4.7e-08 61.6 52 59.6
TWI53G0337 Tripterygium wilfordii HOM05D001326 ORTHO05D002471 4.7e-08 61.6 52 67.3
CAN.G232.5 Capsicum annuum HOM05D001326 ORTHO05D002471 6.2e-08 61.2 52 61.5
Lsat_1_v5_gn_9_3680 Lactuca sativa HOM05D001326 ORTHO05D002471 6.2e-08 61.2 51 58.8
MSTRG.18234 Avicennia marina HOM05D001326 ORTHO05D002471 8.1e-08 60.8 52 59.6
unitig_748.g8552 Utricularia gibba HOM05D001326 ORTHO05D002471 8.1e-08 60.8 52 61.5
Actinidia24891 Actinidia chinensis HOM05D001326 ORTHO05D002471 1.1e-07 60.5 52 59.6
Prupe.8G240900 Prunus persica HOM05D001326 ORTHO05D002471 1.1e-07 60.5 50 60.0
QL12p021879 Quercus lobata HOM05D001326 ORTHO05D002471 1.1e-07 60.5 52 57.7
Sed0012650 Sechium edule HOM05D001326 ORTHO05D002471 1.1e-07 60.5 53 60.4
Actinidia21114 Actinidia chinensis HOM05D001326 ORTHO05D002471 1.4e-07 60.1 52 59.6
FAN20G0388 Fragaria x ananassa HOM05D001326 ORTHO05D002471 1.4e-07 60.1 52 57.7
FAN27G3005 Fragaria x ananassa HOM05D001326 ORTHO05D002471 1.4e-07 60.1 52 57.7
TAR365G0153 Trochodendron aralioides HOM05D001326 ORTHO05D002471 1.4e-07 60.1 52 59.6
vmacro02571 Vaccinium macrocarpon HOM05D001326 ORTHO05D002471 1.4e-07 60.1 52 61.5
VMungo0720G0975 Vigna mungo HOM05D001326 ORTHO05D002471 1.4e-07 60.1 52 53.8
CDE05G2955 Ceratophyllum demersum HOM05D001326 ORTHO05D002471 1.8e-07 59.7 47 61.7
DCAR_002733 Daucus carota HOM05D001326 ORTHO05D002471 2.3e-07 59.3 47 63.8
Medtr1g072250 Medicago truncatula HOM05D001326 ORTHO05D002471 2.3e-07 59.3 52 55.8
FAN15G1939 Fragaria x ananassa HOM05D001326 ORTHO05D002471 3.1e-07 58.9 52 55.8
SalBow4G2940 Salvia bowleyana HOM05D001326 ORTHO05D002471 3.1e-07 58.9 52 59.6
A09p54950 Brassica napus HOM05D001326 ORTHO05D002471 4.0e-07 58.5 53 52.8
FvH4_2g23560 Fragaria vesca HOM05D001326 ORTHO05D002471 4.0e-07 58.5 52 55.8
C08p37860 Brassica napus HOM05D001326 ORTHO05D002471 5.2e-07 58.2 53 54.7
CANSAT25G0731 Cannabis sativa HOM05D001326 ORTHO05D002471 6.8e-07 57.8 52 57.7
Lj3P740T27 Lonicera japonica HOM05D001326 ORTHO05D002471 6.8e-07 57.8 52 53.8
Lalb_Chr06g0163001 Lupinus albus HOM05D001326 ORTHO05D002471 6.8e-07 57.8 52 53.8
BolC8t51364H Brassica oleracea HOM05D001326 ORTHO05D002471 8.9e-07 57.4 53 52.8
Rhsim13G0024900 Rhododendron simsii HOM05D001326 ORTHO05D002471 8.9e-07 57.4 52 57.7
Carub.0003s0542 Capsella rubella HOM05D001326 ORTHO05D002471 1.2e-06 57.0 52 57.7
C04p30090 Brassica napus HOM05D001326 ORTHO05D002471 1.5e-06 56.6 53 52.8
Cpa.g.sc370.5 Carica papaya HOM05D001326 ORTHO05D002471 1.5e-06 56.6 53 54.7
Sed0023105 Sechium edule HOM05D001326 ORTHO05D002471 2.0e-06 56.2 54 59.3
HPP92_021899 Vanilla planifolia HOM05D001326 ORTHO05D002471 2.0e-06 56.2 52 53.8
AT3G06000 Arabidopsis thaliana HOM05D001326 ORTHO05D002471 2.6e-06 55.8 52 55.8
A04p00270 Brassica napus HOM05D001326 ORTHO05D002471 2.6e-06 55.8 52 55.8
BraA04t15746Z Brassica rapa HOM05D001326 ORTHO05D002471 2.6e-06 55.8 52 55.8
Thhalv10005880m.g Eutrema salsugineum HOM05D001326 ORTHO05D002471 2.6e-06 55.8 49 57.1
BcaC07g40793 Brassica carinata HOM05D001326 ORTHO05D002471 3.4e-06 55.5 52 51.9
Lalb_Chr02g0144681 Lupinus albus HOM05D001326 ORTHO05D002471 3.4e-06 55.5 52 55.8
Pp3c11_16930 Physcomitrium patens HOM05D001326 ORTHO05D002471 3.4e-06 55.5 107 50.5
Carub.0005s2980 Capsella rubella HOM05D001326 ORTHO05D002471 7.6e-06 54.3 47 55.3


User provided reference genes

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