Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p45130 Brassica napus HOM05D004215 ORTHO05D005293 3.5e-43 177.9 93 100.0
BolC8t52061H Brassica oleracea HOM05D004215 ORTHO05D005293 3.5e-43 177.9 93 100.0
Carub.0001s1491 Capsella rubella HOM05D004215 ORTHO05D005293 2.1e-16 89.0 57 86.0
AL1G27210 Arabidopsis lyrata HOM05D004215 ORTHO05D005293 8.1e-16 87.0 66 75.8
BcaC05g25445 Brassica carinata HOM05D004215 ORTHO05D005293 1.1e-15 86.7 58 82.8
C05p13270 Brassica napus HOM05D004215 ORTHO05D005293 1.1e-15 86.7 58 82.8
BolC5t30064H Brassica oleracea HOM05D004215 ORTHO05D005293 1.1e-15 86.7 58 82.8
BraA06t24295Z Brassica rapa HOM05D004215 ORTHO05D005293 2.4e-15 85.5 58 81.0
Thhalv10008333m.g Eutrema salsugineum HOM05D004215 ORTHO05D005293 6.8e-15 84.0 57 80.7
A06p11150 Brassica napus HOM05D004215 ORTHO05D005293 7.6e-14 80.5 54 75.9
CARHR015680 Cardamine hirsuta HOM05D004215 ORTHO05D005293 1.3e-13 79.7 57 77.2
BolC8t49328H Brassica oleracea HOM05D004215 ORTHO05D005293 2.2e-13 79.0 60 71.7
A08p31720 Brassica napus HOM05D004215 ORTHO05D005293 2.9e-13 78.6 60 71.7
BraA08t35094Z Brassica rapa HOM05D004215 ORTHO05D005293 2.9e-13 78.6 60 71.7
AT1G15140 Arabidopsis thaliana HOM05D004215 ORTHO05D005293 6.4e-13 77.4 66 69.7
BcaB03g13074 Brassica carinata HOM05D004215 ORTHO05D005293 6.4e-13 77.4 59 74.6
Aa31LG1G20 Aethionema arabicum HOM05D004215 ORTHO05D005293 1.1e-12 76.6 61 65.6
BolC5t33841H Brassica oleracea HOM05D004215 ORTHO05D005293 1.4e-12 76.3 58 70.7
BcaC07g38770 Brassica carinata HOM05D004215 ORTHO05D005293 5.4e-12 74.3 61 70.5
C08p17030 Brassica napus HOM05D004215 ORTHO05D005293 5.4e-12 74.3 61 70.5
Sp1g13480 Schrenkiella parvula HOM05D004215 ORTHO05D005293 7.8e-11 70.5 40 85.0
BcaB02g06582 Brassica carinata HOM05D004215 ORTHO05D005293 1.1e-09 66.6 40 80.0
THA.LOC104805048 Tarenaya hassleriana HOM05D004215 ORTHO05D005293 2.5e-09 65.5 40 80.0
Glyma.10G267000 Glycine max HOM05D004215 ORTHO05D005293 9.6e-09 63.5 40 75.0
Phvul.007G035000 Phaseolus vulgaris HOM05D004215 ORTHO05D005293 1.3e-08 63.2 40 75.0
Sed0020304 Sechium edule HOM05D004215 ORTHO05D005293 1.6e-08 62.8 38 76.3
Glyma.20G123700 Glycine max HOM05D004215 ORTHO05D005293 2.8e-08 62.0 40 75.0
CANSAT01G2004 Cannabis sativa HOM05D004215 ORTHO05D005293 3.6e-08 61.6 54 55.6
Lalb_Chr17g0338761 Lupinus albus HOM05D004215 ORTHO05D005293 3.6e-08 61.6 40 70.0
Sed0017516 Sechium edule HOM05D004215 ORTHO05D005293 3.6e-08 61.6 38 76.3
Eucgr.B02879 Eucalyptus grandis HOM05D004215 ORTHO05D005293 4.8e-08 61.2 51 66.7
VMungo0720G1296 Vigna mungo HOM05D004215 ORTHO05D005293 4.8e-08 61.2 40 72.5
MSTRG.13568 Avicennia marina HOM05D004215 ORTHO05D005293 6.2e-08 60.8 43 67.4
Migut.E00397 Erythranthe guttata HOM05D004215 ORTHO05D005293 6.2e-08 60.8 37 78.4
Psat6g222520 Pisum sativum HOM05D004215 ORTHO05D005293 6.2e-08 60.8 40 70.0
TWI79G1401 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 6.2e-08 60.8 40 72.5
Atru.chr11.354 Acer truncatum HOM05D004215 ORTHO05D005293 8.1e-08 60.5 56 57.1
Lj5g0023519 Lotus japonicus HOM05D004215 ORTHO05D005293 8.1e-08 60.5 40 70.0
CSS0000916 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 1.1e-07 60.1 40 70.0
ClCG05G022300 Citrullus lanatus HOM05D004215 ORTHO05D005293 1.1e-07 60.1 38 73.7
Gohir.D05G319000 Gossypium hirsutum HOM05D004215 ORTHO05D005293 1.1e-07 60.1 40 72.5
Gorai.009G341900 Gossypium raimondii HOM05D004215 ORTHO05D005293 1.1e-07 60.1 40 72.5
Solyc05g008450.3 Solanum lycopersicum HOM05D004215 ORTHO05D005293 1.1e-07 60.1 41 68.3
Sopen05g004280 Solanum pennellii HOM05D004215 ORTHO05D005293 1.1e-07 60.1 41 68.3
PGSC0003DMG400030559 Solanum tuberosum HOM05D004215 ORTHO05D005293 1.1e-07 60.1 41 68.3
Thecc.02G217400 Theobroma cacao HOM05D004215 ORTHO05D005293 1.1e-07 60.1 40 72.5
Peaxi162Scf00205g00925 Petunia axillaris HOM05D004215 ORTHO05D005293 1.4e-07 59.7 41 68.3
SalBow8G1964 Salvia bowleyana HOM05D004215 ORTHO05D005293 1.4e-07 59.7 40 70.0
SGA_v2.0_scaffold14G06920 Striga asiatica HOM05D004215 ORTHO05D005293 1.4e-07 59.7 41 68.3
CAN.G1489.9 Capsicum annuum HOM05D004215 ORTHO05D005293 1.8e-07 59.3 41 68.3
COL.COLO4_15325 Corchorus olitorius HOM05D004215 ORTHO05D005293 1.8e-07 59.3 40 70.0
Manes.14G110200 Manihot esculenta HOM05D004215 ORTHO05D005293 1.8e-07 59.3 40 72.5
TPR.G4918 Trifolium pratense HOM05D004215 ORTHO05D005293 1.8e-07 59.3 40 70.0
Actinidia31987 Actinidia chinensis HOM05D004215 ORTHO05D005293 2.4e-07 58.9 37 75.7
CSS0048780 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 2.4e-07 58.9 40 70.0
Potri.008G126700 Populus trichocarpa HOM05D004215 ORTHO05D005293 2.4e-07 58.9 40 67.5
Prupe.1G320800 Prunus persica HOM05D004215 ORTHO05D005293 2.4e-07 58.9 40 67.5
Duzib251G0621 Durio zibethinus HOM05D004215 ORTHO05D005293 3.1e-07 58.5 40 67.5
Nitab4.5_0000293g0040 Nicotiana tabacum HOM05D004215 ORTHO05D005293 3.1e-07 58.5 41 65.9
Nitab4.5_0000350g0220 Nicotiana tabacum HOM05D004215 ORTHO05D005293 3.1e-07 58.5 41 65.9
RcHm_v2.0_Chr4g0433881 Rosa chinensis HOM05D004215 ORTHO05D005293 3.1e-07 58.5 57 61.4
arahy.Tifrunner.gnm1.ann1.BMT3C6 Arachis hypogaea HOM05D004215 ORTHO05D005293 4.0e-07 58.2 64 57.8
arahy.Tifrunner.gnm1.ann1.IPKA5V Arachis hypogaea HOM05D004215 ORTHO05D005293 4.0e-07 58.2 64 57.8
C02p55250 Brassica napus HOM05D004215 ORTHO05D005293 4.0e-07 58.2 43 72.1
BolC2t11573H Brassica oleracea HOM05D004215 ORTHO05D005293 4.0e-07 58.2 43 72.1
Ciclev10016124m.g Citrus clementina HOM05D004215 ORTHO05D005293 4.0e-07 58.2 40 67.5
Dinv16170 Davidia involucrata HOM05D004215 ORTHO05D005293 4.0e-07 58.2 37 75.7
FvH4_4g26280 Fragaria vesca HOM05D004215 ORTHO05D005293 4.0e-07 58.2 57 61.4
FAN12G1757 Fragaria x ananassa HOM05D004215 ORTHO05D005293 4.0e-07 58.2 57 61.4
FAN17G1658 Fragaria x ananassa HOM05D004215 ORTHO05D005293 4.0e-07 58.2 57 61.4
Lalb_Chr06g0165701 Lupinus albus HOM05D004215 ORTHO05D005293 4.0e-07 58.2 40 70.0
MBI10_g46302_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 4.0e-07 58.2 40 70.0
Sc14g0007220 Simmondsia chinensis HOM05D004215 ORTHO05D005293 4.0e-07 58.2 40 70.0
unitig_699.g19481 Utricularia gibba HOM05D004215 ORTHO05D005293 4.0e-07 58.2 38 76.3
EL10Ac6g14267 Beta vulgaris HOM05D004215 ORTHO05D005293 5.3e-07 57.8 41 65.9
CsaV3_5G034820 Cucumis sativus L. HOM05D004215 ORTHO05D005293 5.3e-07 57.8 38 71.1
vmacro01429 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 5.3e-07 57.8 40 67.5
Medtr1g108710 Medicago truncatula HOM05D004215 ORTHO05D005293 6.9e-07 57.4 73 53.4
Cc11_g09170 Coffea canephora HOM05D004215 ORTHO05D005293 9.0e-07 57.0 40 67.5
MELO3C012293.2 Cucumis melo HOM05D004215 ORTHO05D005293 9.0e-07 57.0 38 68.4
FAN07G0674 Fragaria x ananassa HOM05D004215 ORTHO05D005293 9.0e-07 57.0 54 61.1
FAN12G4108 Fragaria x ananassa HOM05D004215 ORTHO05D005293 9.0e-07 57.0 57 61.4
FAN22G1507 Fragaria x ananassa HOM05D004215 ORTHO05D005293 9.0e-07 57.0 54 61.1
PSO017G7108 Papaver somniferum HOM05D004215 ORTHO05D005293 9.0e-07 57.0 40 65.0
PSO478G0614 Papaver somniferum HOM05D004215 ORTHO05D005293 9.0e-07 57.0 40 65.0
Rhsim09G0069000 Rhododendron simsii HOM05D004215 ORTHO05D005293 9.0e-07 57.0 40 67.5
BcaC03g17546 Brassica carinata HOM05D004215 ORTHO05D005293 1.2e-06 56.6 43 69.8
Cfa015796 Carpinus fangiana HOM05D004215 ORTHO05D005293 1.2e-06 56.6 67 56.7
CiPaw.06G014700 Carya illinoinensis HOM05D004215 ORTHO05D005293 1.2e-06 56.6 57 57.9
Haze_00697 Corylus avellana HOM05D004215 ORTHO05D005293 1.2e-06 56.6 66 51.5
Migut.L00651 Erythranthe guttata HOM05D004215 ORTHO05D005293 1.2e-06 56.6 40 65.0
MD16G1033500 Malus domestica HOM05D004215 ORTHO05D005293 1.2e-06 56.6 57 64.9
TWI31G0297 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 1.2e-06 56.6 40 67.5
CiPaw.05G246100 Carya illinoinensis HOM05D004215 ORTHO05D005293 1.5e-06 56.2 40 65.0
Ca_23697_v3 Cicer arietinum L. HOM05D004215 ORTHO05D005293 1.5e-06 56.2 38 71.1
Migut.L00828 Erythranthe guttata HOM05D004215 ORTHO05D005293 1.5e-06 56.2 38 68.4
MD13G1031300 Malus domestica HOM05D004215 ORTHO05D005293 1.5e-06 56.2 57 64.9
QL01p002798 Quercus lobata HOM05D004215 ORTHO05D005293 1.5e-06 56.2 62 51.6
Hma1.2p1_0114F.1_g055430 Hydrangea macrophylla HOM05D004215 ORTHO05D005293 2.0e-06 55.8 54 57.4
Lj3A876G45 Lonicera japonica HOM05D004215 ORTHO05D005293 2.0e-06 55.8 40 67.5
Hund25007 Selenicereus undatus HOM05D004215 ORTHO05D005293 2.0e-06 55.8 40 65.0
GSVIVG01011796001 Vitis vinifera HOM05D004215 ORTHO05D005293 2.0e-06 55.8 40 67.5
Actinidia36693 Actinidia chinensis HOM05D004215 ORTHO05D005293 2.6e-06 55.5 41 63.4
Aqoxy3G00166 Aquilegia oxysepala HOM05D004215 ORTHO05D005293 2.6e-06 55.5 38 68.4
DCAR_023619 Daucus carota HOM05D004215 ORTHO05D005293 2.6e-06 55.5 38 65.8
Potri.010G116500 Populus trichocarpa HOM05D004215 ORTHO05D005293 2.6e-06 55.5 58 56.9
AUR62014123 Chenopodium quinoa HOM05D004215 ORTHO05D005293 3.4e-06 55.1 56 57.1
HPP92_021849 Vanilla planifolia HOM05D004215 ORTHO05D005293 4.4e-06 54.7 50 60.0
Cpa.g.sc65.98 Carica papaya HOM05D004215 ORTHO05D005293 7.6e-06 53.9 40 67.5
SEGI_29541 Sequoiadendron giganteum HOM05D004215 ORTHO05D005293 7.6e-06 53.9 40 60.0
ECA233G2791 Erigeron canadensis HOM05D004215 ORTHO05D005293 9.9e-06 53.5 37 67.6
Os02g0328300 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 9.9e-06 53.5 41 58.5
TAR629G2922 Trochodendron aralioides HOM05D004215 ORTHO05D005293 9.9e-06 53.5 40 62.5


User provided reference genes

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