Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p45110 Brassica napus HOM05D005050 ORTHO05D006198 5.4e-204 714.1 373 100.0
BcaNung05518 Brassica carinata HOM05D005050 ORTHO05D006198 2.6e-145 519.2 358 82.1
BcaB02g06585 Brassica carinata HOM05D005050 ORTHO05D006198 1.5e-121 440.3 322 75.8
BcaB03g14555 Brassica carinata HOM05D005050 ORTHO05D006198 2.8e-120 436.0 289 85.1
A06p11180 Brassica napus HOM05D005050 ORTHO05D006198 8.3e-120 434.5 343 72.6
BcaC05g25448 Brassica carinata HOM05D005050 ORTHO05D006198 4.1e-119 432.2 324 75.6
C05p13300 Brassica napus HOM05D005050 ORTHO05D006198 4.1e-119 432.2 324 75.6
Sp1g13510 Schrenkiella parvula HOM05D005050 ORTHO05D006198 4.5e-118 428.7 351 71.5
AT1G15200 Arabidopsis thaliana HOM05D005050 ORTHO05D006198 1.7e-112 410.2 338 71.3
Thhalv10007720m.g Eutrema salsugineum HOM05D005050 ORTHO05D006198 3.5e-110 402.5 329 71.7
AL1G27280 Arabidopsis lyrata HOM05D005050 ORTHO05D006198 6.0e-110 401.7 359 67.1
Carub.0001s1495 Capsella rubella HOM05D005050 ORTHO05D006198 1.0e-109 401.0 336 69.9
BolC8t52057H Brassica oleracea HOM05D005050 ORTHO05D006198 3.8e-88 329.3 178 97.8
THA.LOC104805935 Tarenaya hassleriana HOM05D005050 ORTHO05D006198 9.2e-87 324.7 330 60.6
Thecc.02G041900 Theobroma cacao HOM05D005050 ORTHO05D006198 4.7e-83 312.4 331 58.6
Duzib052G0527 Durio zibethinus HOM05D005050 ORTHO05D006198 3.1e-82 309.7 331 57.4
Gorai.002G001300 Gossypium raimondii HOM05D005050 ORTHO05D006198 9.0e-82 308.1 331 57.1
Gohir.A01G001100 Gossypium hirsutum HOM05D005050 ORTHO05D006198 1.2e-81 307.8 331 56.8
Aa31LG1G10 Aethionema arabicum HOM05D005050 ORTHO05D006198 2.6e-81 306.6 335 55.8
FAN13G0813 Fragaria x ananassa HOM05D005050 ORTHO05D006198 4.4e-81 305.8 331 56.2
FvH4_5g29810 Fragaria vesca HOM05D005050 ORTHO05D006198 5.8e-81 305.4 331 57.4
FAN18G3347 Fragaria x ananassa HOM05D005050 ORTHO05D006198 7.6e-81 305.1 331 57.1
Gohir.D01G000800 Gossypium hirsutum HOM05D005050 ORTHO05D006198 7.6e-81 305.1 331 56.5
RcHm_v2.0_Chr7g0223331 Rosa chinensis HOM05D005050 ORTHO05D006198 7.6e-81 305.1 332 56.0
Cpa.g.sc2.30 Carica papaya HOM05D005050 ORTHO05D006198 2.9e-80 303.1 336 54.2
MD08G1227300 Malus domestica HOM05D005050 ORTHO05D006198 2.9e-80 303.1 371 53.6
Ciclev10001338m.g Citrus clementina HOM05D005050 ORTHO05D006198 3.8e-80 302.8 333 54.1
FAN04G2386 Fragaria x ananassa HOM05D005050 ORTHO05D006198 9.3e-79 298.1 331 55.6
GSVIVG01029689001 Vitis vinifera HOM05D005050 ORTHO05D006198 9.3e-79 298.1 340 53.8
Prupe.1G564400 Prunus persica HOM05D005050 ORTHO05D006198 2.1e-78 297.0 330 55.2
QL11p019153 Quercus lobata HOM05D005050 ORTHO05D006198 2.1e-78 297.0 336 56.2
CiPaw.05G042200 Carya illinoinensis HOM05D005050 ORTHO05D006198 1.3e-77 294.3 340 55.9
Rhsim11G0132400 Rhododendron simsii HOM05D005050 ORTHO05D006198 1.3e-77 294.3 335 54.3
ClCG05G009900 Citrullus lanatus HOM05D005050 ORTHO05D006198 1.7e-77 293.9 344 51.7
Sed0002635 Sechium edule HOM05D005050 ORTHO05D006198 2.3e-77 293.5 336 53.0
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 5.1e-77 292.4 322 57.8
Actinidia39062 Actinidia chinensis HOM05D005050 ORTHO05D006198 8.7e-77 291.6 338 53.6
MELO3C019500.2 Cucumis melo HOM05D005050 ORTHO05D006198 2.5e-76 290.0 350 51.4
CsaV3_3G018690 Cucumis sativus L. HOM05D005050 ORTHO05D006198 2.5e-76 290.0 350 51.4
Manes.10G132900 Manihot esculenta HOM05D005050 ORTHO05D006198 4.3e-76 289.3 339 55.2
MD15G1419700 Malus domestica HOM05D005050 ORTHO05D006198 5.6e-76 288.9 348 53.2
Cfa005552 Carpinus fangiana HOM05D005050 ORTHO05D006198 7.3e-76 288.5 337 54.6
Dinv19345 Davidia involucrata HOM05D005050 ORTHO05D006198 2.1e-75 287.0 340 52.4
Sed0013576 Sechium edule HOM05D005050 ORTHO05D006198 2.1e-75 287.0 336 52.4
arahy.Tifrunner.gnm1.ann1.X2Y1CG Arachis hypogaea HOM05D005050 ORTHO05D006198 2.8e-75 286.6 320 55.9
Eucgr.G00618 Eucalyptus grandis HOM05D005050 ORTHO05D006198 4.8e-75 285.8 334 54.5
TAR628G0295 Trochodendron aralioides HOM05D005050 ORTHO05D006198 1.4e-74 284.3 344 54.1
arahy.Tifrunner.gnm1.ann1.V19TN9 Arachis hypogaea HOM05D005050 ORTHO05D006198 2.4e-74 283.5 323 56.3
CANSAT11G1507 Cannabis sativa HOM05D005050 ORTHO05D006198 1.2e-73 281.2 334 53.6
BraA06t24298Z Brassica rapa HOM05D005050 ORTHO05D006198 3.4e-73 279.6 178 86.5
CSS0001826 Camellia sinensis var. sinensis HOM05D005050 ORTHO05D006198 4.5e-73 279.3 341 53.4
PGR042G1149 Punica granatum HOM05D005050 ORTHO05D006198 4.5e-73 279.3 336 54.2
VMungo0251G1671 Vigna mungo HOM05D005050 ORTHO05D006198 7.6e-73 278.5 326 54.6
MSTRG.16540 Avicennia marina HOM05D005050 ORTHO05D006198 9.9e-73 278.1 335 52.2
Atru.chr6.1005 Acer truncatum HOM05D005050 ORTHO05D006198 1.3e-72 277.7 328 53.4
HanXRQChr03g0066561 Helianthus annuus HOM05D005050 ORTHO05D006198 1.3e-72 277.7 339 51.9
CiPaw.06G149400 Carya illinoinensis HOM05D005050 ORTHO05D006198 4.9e-72 275.8 331 53.5
Nn5g27962 Nelumbo nucifera HOM05D005050 ORTHO05D006198 6.4e-72 275.4 343 52.5
TWI59G1202 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 6.4e-72 275.4 339 52.2
Sabra01G0160800 Salix brachista HOM05D005050 ORTHO05D006198 8.4e-72 275.0 335 51.6
Phvul.006G211700 Phaseolus vulgaris HOM05D005050 ORTHO05D006198 1.1e-71 274.6 325 54.5
Glyma.15G048700 Glycine max HOM05D005050 ORTHO05D006198 1.4e-71 274.2 329 55.0
Cc02_g22180 Coffea canephora HOM05D005050 ORTHO05D006198 1.9e-71 273.9 345 50.1
Glyma.08G184100 Glycine max HOM05D005050 ORTHO05D006198 1.9e-71 273.9 333 52.0
BolC5t30067H Brassica oleracea HOM05D005050 ORTHO05D006198 3.2e-71 273.1 180 85.0
HPP92_002179 Vanilla planifolia HOM05D005050 ORTHO05D006198 3.2e-71 273.1 340 53.5
HPP92_002226 Vanilla planifolia HOM05D005050 ORTHO05D006198 1.6e-70 270.8 340 53.5
Lj6g0001640 Lotus japonicus HOM05D005050 ORTHO05D006198 1.8e-69 267.3 337 51.6
arahy.Tifrunner.gnm1.ann1.UX2R4L Arachis hypogaea HOM05D005050 ORTHO05D006198 5.1e-69 265.8 330 52.7
SGA_v2.0_scaffold1G00335 Striga asiatica HOM05D005050 ORTHO05D006198 1.1e-68 264.6 359 49.3
MBI06_g01048_MAGBIO Magnolia biondii HOM05D005050 ORTHO05D006198 1.5e-68 264.2 337 51.9
ECA240G2670 Erigeron canadensis HOM05D005050 ORTHO05D006198 4.3e-68 262.7 337 49.9
TPR.G2134 Trifolium pratense HOM05D005050 ORTHO05D006198 4.3e-68 262.7 332 52.4
Lalb_Chr12g0208631 Lupinus albus HOM05D005050 ORTHO05D006198 5.6e-68 262.3 329 51.4
Nn1g08554 Nelumbo nucifera HOM05D005050 ORTHO05D006198 7.4e-68 261.9 327 52.9
Lsat_1_v5_gn_9_116221 Lactuca sativa HOM05D005050 ORTHO05D006198 1.3e-67 261.2 350 48.6
Hund13068 Selenicereus undatus HOM05D005050 ORTHO05D006198 1.6e-67 260.8 332 50.3
FAN08G2278 Fragaria x ananassa HOM05D005050 ORTHO05D006198 2.1e-67 260.4 331 51.4
PSO170G5110 Papaver somniferum HOM05D005050 ORTHO05D006198 6.2e-67 258.8 332 50.3
Lj9A312G31 Lonicera japonica HOM05D005050 ORTHO05D006198 1.4e-66 257.7 318 51.9
Medtr2g007800 Medicago truncatula HOM05D005050 ORTHO05D006198 2.4e-66 256.9 324 51.9
AUR62025851 Chenopodium quinoa HOM05D005050 ORTHO05D006198 3.1e-66 256.5 333 49.8
TWI14G0535 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 3.1e-66 256.5 336 50.3
Aqoxy5G02481 Aquilegia oxysepala HOM05D005050 ORTHO05D006198 5.3e-66 255.8 333 50.8
arahy.Tifrunner.gnm1.ann1.HMQ04Z Arachis hypogaea HOM05D005050 ORTHO05D006198 1.2e-65 254.6 330 51.5
TAR161G0004 Trochodendron aralioides HOM05D005050 ORTHO05D006198 2.6e-65 253.4 252 58.3
PSO782G5384 Papaver somniferum HOM05D005050 ORTHO05D006198 5.8e-65 252.3 329 50.8
DCAR_029238 Daucus carota HOM05D005050 ORTHO05D006198 7.6e-65 251.9 328 49.7
TWI23G0447 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 2.9e-64 250.0 336 48.2
Hma1.2p1_0557F.1_g178270 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 1.4e-63 247.7 329 50.5
Duzib132G0934 Durio zibethinus HOM05D005050 ORTHO05D006198 7.1e-63 245.4 328 49.7
AUR62029865 Chenopodium quinoa HOM05D005050 ORTHO05D006198 1.2e-62 244.6 365 46.6
BraA09t41526Z Brassica rapa HOM05D005050 ORTHO05D006198 2.1e-62 243.8 248 62.5
CARHR015720 Cardamine hirsuta HOM05D005050 ORTHO05D006198 1.8e-61 240.7 185 74.6
Migut.B00660 Erythranthe guttata HOM05D005050 ORTHO05D006198 3.9e-61 239.6 333 46.8
PGSC0003DMG400029778 Solanum tuberosum HOM05D005050 ORTHO05D006198 8.2e-59 231.9 335 48.4
Solyc01g104560.3 Solanum lycopersicum HOM05D005050 ORTHO05D006198 1.2e-57 228.0 337 47.8
EL10Ac2g03230 Beta vulgaris HOM05D005050 ORTHO05D006198 2.0e-57 227.3 332 47.3
Hma1.2p1_0557F.1_g178260 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 1.0e-56 224.9 400 43.0
vmacro01791 Vaccinium macrocarpon HOM05D005050 ORTHO05D006198 1.0e-56 224.9 278 50.7
CDE12G0224 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 2.2e-56 223.8 335 47.8
CAN.G1352.15 Capsicum annuum HOM05D005050 ORTHO05D006198 3.2e-55 219.9 332 46.7
Potri.003G021900 Populus trichocarpa HOM05D005050 ORTHO05D006198 7.9e-54 215.3 354 44.4
SalBow5G1811 Salvia bowleyana HOM05D005050 ORTHO05D006198 7.9e-54 215.3 336 44.6
SalBow5G5549 Salvia bowleyana HOM05D005050 ORTHO05D006198 7.9e-54 215.3 336 44.6
Ah.10g032530 Amaranthus hybridus HOM05D005050 ORTHO05D006198 1.0e-53 214.9 331 45.9
Zm00001eb216800 Zea mays HOM05D005050 ORTHO05D006198 1.3e-53 214.5 335 45.4
BcaB03g14557 Brassica carinata HOM05D005050 ORTHO05D006198 5.1e-53 212.6 172 75.0
ATR0121G012 Amborella trichopoda HOM05D005050 ORTHO05D006198 8.7e-53 211.8 333 47.1
SHI16611 Sapria himalayana HOM05D005050 ORTHO05D006198 9.7e-52 208.4 337 46.0
Sopen01g047070 Solanum pennellii HOM05D005050 ORTHO05D006198 9.7e-52 208.4 335 45.4
Nitab4.5_0003071g0060 Nicotiana tabacum HOM05D005050 ORTHO05D006198 2.8e-51 206.8 332 43.7
Peaxi162Scf00011g00032 Petunia axillaris HOM05D005050 ORTHO05D006198 5.3e-50 202.6 331 44.1
Nitab4.5_0009907g0040 Nicotiana tabacum HOM05D005050 ORTHO05D006198 1.2e-46 191.4 349 41.8
Oeu026061.1 Olea europaea HOM05D005050 ORTHO05D006198 1.0e-45 188.3 219 51.1
BcaB03g14552 Brassica carinata HOM05D005050 ORTHO05D006198 2.3e-45 187.2 117 84.6
unitig_699.g19082 Utricularia gibba HOM05D005050 ORTHO05D006198 3.0e-45 186.8 359 40.1
CDE01G0517 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 7.4e-44 182.2 335 40.6
CARHR015710 Cardamine hirsuta HOM05D005050 ORTHO05D006198 1.5e-41 174.5 105 85.7
Dinv24255 Davidia involucrata HOM05D005050 ORTHO05D006198 2.6e-41 173.7 257 47.5
Oeu000199.1 Olea europaea HOM05D005050 ORTHO05D006198 5.9e-41 172.6 339 39.5
Sc10g0004970 Simmondsia chinensis HOM05D005050 ORTHO05D006198 7.2e-39 165.6 249 47.4
Lalb_Chr07g0189191 Lupinus albus HOM05D005050 ORTHO05D006198 3.0e-37 160.2 259 45.2
unitig_27.g24937 Utricularia gibba HOM05D005050 ORTHO05D006198 6.7e-37 159.1 178 52.8
Potri.001G208200 Populus trichocarpa HOM05D005050 ORTHO05D006198 5.7e-36 156.0 182 52.7
CANSAT25G2757 Cannabis sativa HOM05D005050 ORTHO05D006198 4.1e-34 149.8 112 69.6
Psat1g219800 Pisum sativum HOM05D005050 ORTHO05D006198 1.0e-32 145.2 179 53.6
CANSAT56G3350 Cannabis sativa HOM05D005050 ORTHO05D006198 2.2e-32 144.1 100 75.0
CANSAT35G1170 Cannabis sativa HOM05D005050 ORTHO05D006198 1.4e-31 141.4 100 74.0
AagrBONN_evm.TU.Sc2ySwM_344.3376 Anthoceros agrestis HOM05D005050 ORTHO05D006198 2.1e-30 137.5 318 37.7
arahy.Tifrunner.gnm1.ann1.5TH0SF Arachis hypogaea HOM05D005050 ORTHO05D006198 6.1e-30 136.0 176 51.7
Mapoly0066s0029 Marchantia polymorpha HOM05D005050 ORTHO05D006198 1.0e-29 135.2 342 34.8
Os03g0701900 Oryza sativa ssp. japonica HOM05D005050 ORTHO05D006198 4.1e-26 123.2 176 47.2
AUR62018227 Chenopodium quinoa HOM05D005050 ORTHO05D006198 2.0e-25 120.9 270 38.5
Zm00001eb054200 Zea mays HOM05D005050 ORTHO05D006198 2.0e-25 120.9 181 45.9
Haze_01615 Corylus avellana HOM05D005050 ORTHO05D006198 2.6e-25 120.6 93 66.7
Pp3c14_12690 Physcomitrium patens HOM05D005050 ORTHO05D006198 2.2e-24 117.5 377 31.6
Pp3c17_13310 Physcomitrium patens HOM05D005050 ORTHO05D006198 7.2e-23 112.5 375 32.5
SMO116G0236 Selaginella moellendorffii HOM05D005050 ORTHO05D006198 7.2e-23 112.5 319 33.2
BcaNung06586 Brassica carinata HOM05D005050 ORTHO05D006198 3.0e-21 107.1 134 56.0
unitig_27.g24936 Utricularia gibba HOM05D000188 ORTHO05D005820 3.0e-21 107.1 100 55.0
Oeu026060.1 Olea europaea HOM05D005050 ORTHO05D006198 3.1e-18 97.1 132 50.0
CBR_g5711 Chara braunii HOM05D005050 ORTHO05D006198 7.0e-18 95.9 229 35.4
Haze_01617 Corylus avellana HOM05D005050 ORTHO05D006198 3.6e-14 83.6 128 47.7
C01p32800 Brassica napus HOM05D005050 ORTHO05D023932 1.0e-13 82.0 59 72.9
BcaC05g25214 Brassica carinata HOM05D008776 ORTHO05D005587 4.0e-13 80.1 59 71.2
BolC8t52058H Brassica oleracea HOM05D005050 ORTHO05D006198 7.5e-12 75.9 37 97.3
BolC8t48089H Brassica oleracea HOM05D019496 ORTHO05D019976 2.9e-08 63.9 106 43.4
C05p47770 Brassica napus HOM05D019496 ORTHO05D019976 5.0e-08 63.2 106 43.4
BcaC02g09385 Brassica carinata HOM05D019496 ORTHO05D019976 1.9e-07 61.2 79 49.4
Sabra03G0013800 Salix brachista HOM05D005050 ORTHO05D006198 1.2e-06 58.5 176 35.2


User provided reference genes

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