Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p11260 Brassica napus HOM05D006417 ORTHO05D008113 1.2e-23 112.5 62 100.0
C08p45090 Brassica napus HOM05D006417 ORTHO05D008113 1.2e-23 112.5 62 100.0
BolC8t52055H Brassica oleracea HOM05D006417 ORTHO05D008113 1.2e-23 112.5 62 100.0
BraA06t24306Z Brassica rapa HOM05D006417 ORTHO05D008113 1.2e-23 112.5 62 100.0
BraA09t41524Z Brassica rapa HOM05D006417 ORTHO05D008113 1.2e-23 112.5 62 100.0
BcaC07g38776 Brassica carinata HOM05D006417 ORTHO05D008113 5.9e-23 110.2 62 98.4
BcaC07g41515 Brassica carinata HOM05D006417 ORTHO05D008113 5.9e-23 110.2 62 98.4
A08p31670 Brassica napus HOM05D006417 ORTHO05D008113 5.9e-23 110.2 62 98.4
A09p61510 Brassica napus HOM05D006417 ORTHO05D008113 5.9e-23 110.2 62 98.4
BolC5t30076H Brassica oleracea HOM05D006417 ORTHO05D008113 5.9e-23 110.2 62 96.8
CARHR015790 Cardamine hirsuta HOM05D006417 ORTHO05D008113 5.9e-23 110.2 62 98.4
Sp1g13580 Schrenkiella parvula HOM05D006417 ORTHO05D008113 5.9e-23 110.2 62 98.4
BcaB03g13069 Brassica carinata HOM05D006417 ORTHO05D008113 1.0e-22 109.4 62 96.8
BcaC05g25455 Brassica carinata HOM05D006417 ORTHO05D008113 3.0e-22 107.8 62 95.2
BcaC05g25459 Brassica carinata HOM05D006417 ORTHO05D008113 3.0e-22 107.8 62 95.2
Aa31LG4G200 Aethionema arabicum HOM05D006417 ORTHO05D008113 5.0e-22 107.1 62 93.5
AL1G27360 Arabidopsis lyrata HOM05D006417 ORTHO05D008113 3.3e-21 104.4 62 93.5
AT1G15270 Arabidopsis thaliana HOM05D006417 ORTHO05D008113 3.3e-21 104.4 62 93.5
Carub.0001s1503 Capsella rubella HOM05D006417 ORTHO05D008113 3.3e-21 104.4 62 93.5
Gohir.A09G082600 Gossypium hirsutum HOM05D006417 ORTHO05D008113 4.3e-21 104.0 62 90.3
Thecc.06G089800 Theobroma cacao HOM05D006417 ORTHO05D008113 7.3e-21 103.2 62 90.3
Gohir.D09G082500 Gossypium hirsutum HOM05D006417 ORTHO05D008113 9.5e-21 102.8 62 88.7
C08p17070 Brassica napus HOM05D006417 ORTHO05D008113 1.6e-20 102.1 57 96.5
BolC8t49333H Brassica oleracea HOM05D006417 ORTHO05D008113 1.6e-20 102.1 57 96.5
Ciclev10026914m.g Citrus clementina HOM05D006417 ORTHO05D008113 1.6e-20 102.1 62 90.3
FAN14G4157 Fragaria x ananassa HOM05D006417 ORTHO05D008113 1.6e-20 102.1 62 91.9
SalBow2G2995 Salvia bowleyana HOM05D006417 ORTHO05D008113 3.6e-20 100.9 62 90.3
Aqoxy7G01686 Aquilegia oxysepala HOM05D006417 ORTHO05D008113 4.7e-20 100.5 62 88.7
FAN02G0035 Fragaria x ananassa HOM05D006417 ORTHO05D008113 4.7e-20 100.5 62 90.3
RcHm_v2.0_Chr2g0138111 Rosa chinensis HOM05D006417 ORTHO05D008113 4.7e-20 100.5 62 90.3
TAR626G0232 Trochodendron aralioides HOM05D006417 ORTHO05D008113 4.7e-20 100.5 62 88.7
MBI06_g06678_MAGBIO Magnolia biondii HOM05D006417 ORTHO05D008113 6.2e-20 100.1 62 87.1
MD17G1194100 Malus domestica HOM05D006417 ORTHO05D008113 6.2e-20 100.1 62 90.3
Medtr4g012800 Medicago truncatula HOM05D006417 ORTHO05D008113 6.2e-20 100.1 62 88.7
Psat7g250440 Pisum sativum HOM05D006417 ORTHO05D008113 6.2e-20 100.1 62 88.7
FAN05G1876 Fragaria x ananassa HOM05D006417 ORTHO05D008113 1.0e-19 99.4 62 88.7
Hma1.2p1_2039F.1_g312170 Hydrangea macrophylla HOM05D006417 ORTHO05D008113 1.0e-19 99.4 60 90.0
Prupe.3G069900 Prunus persica HOM05D006417 ORTHO05D008113 1.0e-19 99.4 62 87.1
Atru.chr1.3302 Acer truncatum HOM05D006417 ORTHO05D008113 1.4e-19 99.0 62 85.5
Lj5A59T64 Lonicera japonica HOM05D006417 ORTHO05D008113 1.4e-19 99.0 62 88.7
CsaV3_3G010850 Cucumis sativus L. HOM05D006417 ORTHO05D008113 1.8e-19 98.6 62 87.1
Lj3g0004039 Lotus japonicus HOM05D006417 ORTHO05D008113 1.8e-19 98.6 62 87.1
Lalb_Chr01g0012721 Lupinus albus HOM05D006417 ORTHO05D008113 1.8e-19 98.6 62 87.1
ATR0724G030 Amborella trichopoda HOM05D006417 ORTHO05D008113 2.3e-19 98.2 62 85.5
AT3G16040 Arabidopsis thaliana HOM05D006417 ORTHO05D008113 2.3e-19 98.2 62 88.7
Aqoxy7G03790 Aquilegia oxysepala HOM05D006417 ORTHO05D008113 3.1e-19 97.8 62 87.1
CSS0028003 Camellia sinensis var. sinensis HOM05D006417 ORTHO05D008113 4.0e-19 97.4 59 89.8
Sed0026778 Sechium edule HOM05D006417 ORTHO05D008113 4.0e-19 97.4 62 85.5
AL3G28690 Arabidopsis lyrata HOM05D006417 ORTHO05D008113 5.2e-19 97.1 62 87.1
AL810U10020 Arabidopsis lyrata HOM05D006417 ORTHO05D008113 5.2e-19 97.1 62 87.1
FAN09G4522 Fragaria x ananassa HOM05D006417 ORTHO05D008113 5.2e-19 97.1 62 87.1
Glyma.08G206000 Glycine max HOM05D006417 ORTHO05D008113 5.2e-19 97.1 62 85.5
DCAR_023056 Daucus carota HOM05D006417 ORTHO05D008113 6.8e-19 96.7 62 85.5
Phvul.010G150000 Phaseolus vulgaris HOM05D006417 ORTHO05D008113 6.8e-19 96.7 62 85.5
Potri.001G181800 Populus trichocarpa HOM05D006417 ORTHO05D008113 6.8e-19 96.7 62 85.5
Migut.D01026 Erythranthe guttata HOM05D006417 ORTHO05D008113 1.2e-18 95.9 62 87.1
Eucgr.J02983 Eucalyptus grandis HOM05D006417 ORTHO05D008113 1.2e-18 95.9 60 88.3
Sed0004760 Sechium edule HOM05D006417 ORTHO05D008113 1.2e-18 95.9 62 83.9
HPP92_003724 Vanilla planifolia HOM05D002497 ORTHO05D002697 1.2e-18 95.9 61 85.2
Carub.0003s1577 Capsella rubella HOM05D006417 ORTHO05D008113 1.5e-18 95.5 62 85.5
Glyma.07G005600 Glycine max HOM05D006417 ORTHO05D008113 1.5e-18 95.5 62 83.9
Manes.04G124600 Manihot esculenta HOM05D006417 ORTHO05D008113 1.5e-18 95.5 71 78.9
RcHm_v2.0_Chr2g0106421 Rosa chinensis HOM05D006417 ORTHO05D008113 1.5e-18 95.5 62 85.5
ClCG05G003220 Citrullus lanatus HOM05D006417 ORTHO05D008113 2.0e-18 95.1 62 82.3
CARHR091200 Cardamine hirsuta HOM05D006417 ORTHO05D008113 2.6e-18 94.7 62 87.1
Thhalv10022282m.g Eutrema salsugineum HOM05D006417 ORTHO05D008113 2.6e-18 94.7 62 85.5
Gorai.006G098200 Gossypium raimondii HOM05D006417 ORTHO05D008113 2.6e-18 94.7 72 76.4
unitig_27.g25076 Utricularia gibba HOM05D006417 ORTHO05D008113 2.6e-18 94.7 62 83.9
Migut.I00879 Erythranthe guttata HOM05D006417 ORTHO05D008113 3.4e-18 94.4 60 85.0
C05p50430 Brassica napus HOM05D006417 ORTHO05D008113 5.8e-18 93.6 62 83.9
ClCG02G009660 Citrullus lanatus HOM05D006417 ORTHO05D008113 5.8e-18 93.6 62 80.6
CANSAT56G0242 Cannabis sativa HOM05D006417 ORTHO05D008113 7.5e-18 93.2 62 80.6
Thhalv10009202m.g Eutrema salsugineum HOM05D006417 ORTHO05D008113 9.8e-18 92.8 90 65.6
Aa31LG8G3190 Aethionema arabicum HOM05D006417 ORTHO05D008113 1.3e-17 92.4 62 83.9
A05p33430 Brassica napus HOM05D006417 ORTHO05D008113 1.3e-17 92.4 60 85.0
Haze_16401 Corylus avellana HOM05D006417 ORTHO05D008113 1.3e-17 92.4 62 87.1
Cpa.g.sc41.8 Carica papaya HOM05D006417 ORTHO05D008113 1.7e-17 92.0 68 76.5
Dinv38039 Davidia involucrata HOM05D006417 ORTHO05D008113 1.7e-17 92.0 62 85.5
Hund06616 Selenicereus undatus HOM05D006417 ORTHO05D008113 2.9e-17 91.3 62 82.3
COL.COLO4_30395 Corchorus olitorius HOM05D006417 ORTHO05D008113 3.7e-17 90.9 62 83.9
Glyma.20G047300 Glycine max HOM05D006417 ORTHO05D008113 3.7e-17 90.9 62 80.6
HanXRQChr04g0096081 Helianthus annuus HOM05D006417 ORTHO05D008113 3.7e-17 90.9 62 85.5
BcaNung06587 Brassica carinata HOM05D006417 ORTHO05D008113 4.9e-17 90.5 57 87.7
CiPaw.01G238100 Carya illinoinensis HOM05D006417 ORTHO05D008113 4.9e-17 90.5 62 85.5
Nn2g11755 Nelumbo nucifera HOM05D006417 ORTHO05D008113 6.4e-17 90.1 63 84.1
Lsat_1_v5_gn_5_130340 Lactuca sativa HOM05D006417 ORTHO05D008113 8.3e-17 89.7 62 83.9
Lj3g0012949 Lotus japonicus HOM05D006417 ORTHO05D008113 8.3e-17 89.7 63 84.1
Sp3g14390 Schrenkiella parvula HOM05D006417 ORTHO05D008113 8.3e-17 89.7 62 82.3
FAN26G3442 Fragaria x ananassa HOM05D006417 ORTHO05D008113 1.1e-16 89.4 62 83.9
HanXRQChr12g0376701 Helianthus annuus HOM05D006417 ORTHO05D008113 1.1e-16 89.4 62 83.9
Zm00001eb225700 Zea mays HOM05D006417 ORTHO05D008113 1.1e-16 89.4 62 85.5
CiPaw.02G150500 Carya illinoinensis HOM05D006417 ORTHO05D008113 1.4e-16 89.0 62 83.9
BcaC05g28917 Brassica carinata HOM05D006417 ORTHO05D008113 3.2e-16 87.8 58 84.5
Cc04_g03270 Coffea canephora HOM05D006417 ORTHO05D008113 3.2e-16 87.8 61 83.6
EL10Ac9g22008 Beta vulgaris HOM05D006417 ORTHO05D008113 4.1e-16 87.4 62 79.0
Oeu063955.1 Olea europaea HOM05D006417 ORTHO05D008113 5.4e-16 87.0 62 82.3
Sc12g0009320 Simmondsia chinensis HOM05D006417 ORTHO05D008113 5.4e-16 87.0 62 79.0
GSVIVG01017091001 Vitis vinifera HOM05D006417 ORTHO05D008113 9.2e-16 86.3 62 79.0
AagrBONN_evm.TU.Sc2ySwM_117.2290 Anthoceros agrestis HOM05D006417 ORTHO05D008113 3.5e-15 84.3 62 74.2
SalBow2G0478 Salvia bowleyana HOM05D008308 ORTHO05D008113 3.5e-15 84.3 55 81.8
Pp3c24_10010 Physcomitrium patens HOM05D006417 ORTHO05D008113 6.0e-15 83.6 61 75.4
arahy.Tifrunner.gnm1.ann1.6441EL Arachis hypogaea HOM05D006417 ORTHO05D008113 7.8e-15 83.2 87 60.9
Peaxi162Scf00034g00611 Petunia axillaris HOM05D006417 ORTHO05D008113 7.8e-15 83.2 62 79.0
SGA_v2.0_scaffold37G14829 Striga asiatica HOM05D006417 ORTHO05D008113 7.8e-15 83.2 60 75.0
Pp3c23_11500 Physcomitrium patens HOM05D006417 ORTHO05D008113 1.0e-14 82.8 61 73.8
PGSC0003DMG400007579 Solanum tuberosum HOM05D006417 ORTHO05D008113 1.3e-14 82.4 62 79.0
Solyc12g043160.3 Solanum lycopersicum HOM05D006417 ORTHO05D008113 1.7e-14 82.0 62 79.0
FAN19G1924 Fragaria x ananassa HOM05D006417 ORTHO05D008113 1.1e-13 79.3 51 84.3
FvH4_1g16510 Fragaria vesca HOM05D006417 ORTHO05D008113 1.5e-13 79.0 51 84.3
DCAR_002649 Daucus carota HOM05D006417 ORTHO05D008113 3.3e-13 77.8 60 75.0
Mapoly0091s0070 Marchantia polymorpha HOM05D006417 ORTHO05D008113 3.3e-13 77.8 59 71.2
CAN.G144.3 Capsicum annuum HOM05D006417 ORTHO05D008113 7.3e-13 76.6 60 78.3
DCAR_007563 Daucus carota HOM05D006417 ORTHO05D008113 7.3e-13 76.6 62 72.6
DCAR_026325 Daucus carota HOM05D006417 ORTHO05D008113 7.3e-13 76.6 62 72.6
Glyma.14G136351 Glycine max HOM05D006417 ORTHO05D008113 1.2e-12 75.9 57 73.7
ECA247G1523 Erigeron canadensis HOM05D001142 ORTHO05D004628 2.8e-12 74.7 52 82.7
BraA08t35089Z Brassica rapa HOM05D006417 ORTHO05D008113 3.6e-12 74.3 42 97.6
Lsat_1_v5_gn_1_35180 Lactuca sativa HOM05D006417 ORTHO05D008113 1.1e-11 72.8 54 77.8
Lalb_Chr04g0262751 Lupinus albus HOM05D006417 ORTHO05D008113 9.8e-10 66.2 40 90.0
ClCG09G002080 Citrullus lanatus HOM05D000001 ORTHO05D000003 4.9e-09 63.9 40 85.0
Nitab4.5_0004241g0020 Nicotiana tabacum HOM05D006417 ORTHO05D008113 4.9e-09 63.9 60 68.3
ClCG11G012700 Citrullus lanatus HOM05D006417 ORTHO05D008113 6.4e-09 63.5 62 64.5
Cre10.g438600 Chlamydomonas reinhardtii HOM05D006417 ORTHO05D008113 8.3e-09 63.2 60 65.0
Nitab4.5_0002859g0060 Nicotiana tabacum HOM05D006417 ORTHO05D008113 6.0e-07 57.0 62 61.3


User provided reference genes

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