Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p44950 Brassica napus HOM05D002282 ORTHO05D002403 7.9e-84 313.9 180 100.0
BcaC07g41500 Brassica carinata HOM05D002282 ORTHO05D002403 1.9e-69 266.2 177 90.4
A08p31580 Brassica napus HOM05D002282 ORTHO05D002403 3.9e-67 258.5 181 81.2
BraA08t35080Z Brassica rapa HOM05D002282 ORTHO05D002403 3.9e-67 258.5 181 81.2
BolC8t52042H Brassica oleracea HOM05D002282 ORTHO05D002403 5.3e-64 248.1 164 89.6
Sp1g13790 Schrenkiella parvula HOM05D002282 ORTHO05D002403 5.9e-63 244.6 181 77.9
A06p11480 Brassica napus HOM05D002282 ORTHO05D002403 6.5e-62 241.1 182 79.7
BraA06t24325Z Brassica rapa HOM05D002282 ORTHO05D002403 6.5e-62 241.1 181 80.1
CARHR015980 Cardamine hirsuta HOM05D002282 ORTHO05D002403 1.4e-61 240.0 182 76.9
C05p13600 Brassica napus HOM05D002282 ORTHO05D002403 3.2e-61 238.8 182 78.0
BolC5t30096H Brassica oleracea HOM05D002282 ORTHO05D002403 3.2e-61 238.8 182 78.0
Carub.0001s1522 Capsella rubella HOM05D002282 ORTHO05D002403 1.6e-60 236.5 181 77.9
BcaB03g13061 Brassica carinata HOM05D002282 ORTHO05D002403 1.4e-59 233.4 181 79.0
C08p17190 Brassica napus HOM05D002282 ORTHO05D002403 2.3e-59 232.6 159 82.4
BolC8t49348H Brassica oleracea HOM05D002282 ORTHO05D002403 2.3e-59 232.6 159 82.4
BcaC07g38789 Brassica carinata HOM05D002282 ORTHO05D002403 3.0e-59 232.3 160 86.2
AT1G15420 Arabidopsis thaliana HOM05D002282 ORTHO05D002403 1.5e-58 229.9 180 76.7
Thhalv10008433m.g Eutrema salsugineum HOM05D002282 ORTHO05D002403 1.5e-58 229.9 181 74.0
AL1G27540 Arabidopsis lyrata HOM05D002282 ORTHO05D002403 4.8e-57 224.9 180 75.6
BcaB03g14539 Brassica carinata HOM05D002282 ORTHO05D002403 9.1e-56 220.7 158 78.5
Aa31LG3G13660 Aethionema arabicum HOM05D002282 ORTHO05D002403 1.6e-52 209.9 160 76.9
Cpa.g.sc336.4 Carica papaya HOM05D002282 ORTHO05D002403 8.8e-51 204.1 182 63.2
A09p61400 Brassica napus HOM05D002282 ORTHO05D002403 2.6e-50 202.6 137 81.0
Duzib235G0185 Durio zibethinus HOM05D002282 ORTHO05D002403 1.1e-48 197.2 187 61.5
Gohir.A05G124900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 3.5e-47 192.2 187 61.5
Thecc.06G073800 Theobroma cacao HOM05D002282 ORTHO05D002403 7.7e-47 191.0 187 59.9
Nn2g11949 Nelumbo nucifera HOM05D002282 ORTHO05D002403 1.7e-46 189.9 183 57.9
QL06p023750 Quercus lobata HOM05D002282 ORTHO05D002403 7.2e-45 184.5 185 58.9
Gohir.D05G125900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 1.2e-44 183.7 187 59.4
TWI18G0202 Tripterygium wilfordii HOM05D002282 ORTHO05D002403 1.2e-44 183.7 186 58.1
Gorai.009G129900 Gossypium raimondii HOM05D002282 ORTHO05D002403 1.6e-44 183.3 187 59.4
COL.COLO4_23901 Corchorus olitorius HOM05D002282 ORTHO05D002403 3.6e-44 182.2 187 59.4
Potri.003G060900 Populus trichocarpa HOM05D002282 ORTHO05D002403 1.4e-43 180.3 183 55.7
TAR383G0492 Trochodendron aralioides HOM05D002282 ORTHO05D002403 1.8e-43 179.9 175 57.7
Potri.001G173300 Populus trichocarpa HOM05D002282 ORTHO05D002403 4.0e-43 178.7 183 56.8
Haze_05779 Corylus avellana HOM05D002282 ORTHO05D002403 5.2e-43 178.3 163 60.7
MD15G1387900 Malus domestica HOM05D002282 ORTHO05D002403 6.7e-43 177.9 186 54.3
Lalb_Chr04g0262501 Lupinus albus HOM05D002282 ORTHO05D002403 3.3e-42 175.6 177 55.4
Solyc03g116380.4 Solanum lycopersicum HOM05D002282 ORTHO05D002403 5.7e-42 174.9 186 56.5
Sopen03g035310 Solanum pennellii HOM05D002282 ORTHO05D002403 5.7e-42 174.9 186 56.5
Hund00550 Selenicereus undatus HOM05D002282 ORTHO05D002403 9.7e-42 174.1 183 54.1
CAN.G407.112 Capsicum annuum HOM05D002282 ORTHO05D002403 1.7e-41 173.3 185 56.8
CiPaw.01G244200 Carya illinoinensis HOM05D002282 ORTHO05D002403 2.8e-41 172.6 187 55.1
COL.COLO4_12890 Corchorus olitorius HOM05D002282 ORTHO05D002403 2.8e-41 172.6 185 59.5
Phvul.010G153600 Phaseolus vulgaris HOM05D002282 ORTHO05D002403 3.7e-41 172.2 176 54.0
RcHm_v2.0_Chr5g0081181 Rosa chinensis HOM05D002282 ORTHO05D002403 3.7e-41 172.2 190 54.2
DCAR_025482 Daucus carota HOM05D002282 ORTHO05D002403 4.8e-41 171.8 177 56.5
Ciclev10025131m.g Citrus clementina HOM05D002282 ORTHO05D002403 1.4e-40 170.2 143 62.2
Dinv30569 Davidia involucrata HOM05D002282 ORTHO05D002403 1.4e-40 170.2 184 55.4
MBI04_g10418_MAGBIO Magnolia biondii HOM05D002282 ORTHO05D002403 1.4e-40 170.2 187 54.5
Nitab4.5_0002257g0110 Nicotiana tabacum HOM05D002282 ORTHO05D002403 1.8e-40 169.9 180 56.1
PGR031G0824 Punica granatum HOM05D002282 ORTHO05D002403 2.4e-40 169.5 186 53.2
Peaxi162Scf00274g00850 Petunia axillaris HOM05D002282 ORTHO05D002403 3.1e-40 169.1 180 55.6
Sabra01G0138500 Salix brachista HOM05D002282 ORTHO05D002403 3.1e-40 169.1 183 53.6
PGSC0003DMG400000602 Solanum tuberosum HOM05D002282 ORTHO05D002403 4.1e-40 168.7 185 55.7
arahy.Tifrunner.gnm1.ann1.NNZF0Z Arachis hypogaea HOM05D002282 ORTHO05D002403 1.2e-39 167.2 186 54.3
TPR.G3896 Trifolium pratense HOM05D002282 ORTHO05D002403 1.2e-39 167.2 179 54.2
Nitab4.5_0006574g0100 Nicotiana tabacum HOM05D002282 ORTHO05D002403 1.6e-39 166.8 185 55.1
VMungo0331G0533 Vigna mungo HOM05D002282 ORTHO05D002403 1.6e-39 166.8 176 59.1
QL05p027693 Quercus lobata HOM05D002282 ORTHO05D002403 2.7e-39 166.0 206 50.5
FAN11G0586 Fragaria x ananassa HOM05D002282 ORTHO05D002403 3.5e-39 165.6 145 60.7
Oeu045971.1 Olea europaea HOM05D002282 ORTHO05D002403 3.5e-39 165.6 182 53.8
THA.LOC104812495 Tarenaya hassleriana HOM05D002282 ORTHO05D002403 3.5e-39 165.6 176 58.0
CSS0048718 Camellia sinensis var. sinensis HOM05D002282 ORTHO05D002403 5.9e-39 164.9 180 51.7
Prupe.6G012700 Prunus persica HOM05D002282 ORTHO05D002403 5.9e-39 164.9 186 51.6
Actinidia15798 Actinidia chinensis HOM05D002282 ORTHO05D002403 7.7e-39 164.5 180 52.8
CiPaw.02G154700 Carya illinoinensis HOM05D002282 ORTHO05D002403 7.7e-39 164.5 187 54.0
RcHm_v2.0_Chr1g0331681 Rosa chinensis HOM05D002282 ORTHO05D002403 7.7e-39 164.5 190 52.6
Ah.01g020860 Amaranthus hybridus HOM05D000121 ORTHO05D000102 1.7e-38 163.3 180 59.4
Lj3g0004862 Lotus japonicus HOM05D002282 ORTHO05D002403 2.2e-38 162.9 142 59.9
PSO170G0153 Papaver somniferum HOM05D002282 ORTHO05D002403 2.2e-38 162.9 184 52.2
SalBow1G0696 Salvia bowleyana HOM05D002282 ORTHO05D002403 2.2e-38 162.9 184 52.2
Cc04_g04050 Coffea canephora HOM05D002282 ORTHO05D002403 2.9e-38 162.5 179 54.2
CANSAT56G4088 Cannabis sativa HOM05D002282 ORTHO05D002403 5.0e-38 161.8 147 58.5
Atru.chr1.3116 Acer truncatum HOM05D002282 ORTHO05D002403 6.5e-38 161.4 156 57.7
GSVIVG01017246001 Vitis vinifera HOM05D002282 ORTHO05D002403 8.5e-38 161.0 143 58.7
Lj5A68G60 Lonicera japonica HOM05D002282 ORTHO05D002403 1.5e-37 160.2 145 56.6
BcaC05g25485 Brassica carinata HOM05D002282 ORTHO05D002403 1.9e-37 159.8 86 94.2
CsaV3_7G032650 Cucumis sativus L. HOM05D002282 ORTHO05D002403 1.9e-37 159.8 145 57.2
FAN16G2654 Fragaria x ananassa HOM05D002282 ORTHO05D002403 3.2e-37 159.1 187 54.0
FAN25G3025 Fragaria x ananassa HOM05D002282 ORTHO05D002403 3.2e-37 159.1 187 54.5
AUR62011569 Chenopodium quinoa HOM05D002282 ORTHO05D002403 5.5e-37 158.3 135 60.0
Lsat_1_v5_gn_1_33521 Lactuca sativa HOM05D002282 ORTHO05D002403 5.5e-37 158.3 141 58.9
PSO782G5325 Papaver somniferum HOM05D002282 ORTHO05D002403 7.2e-37 157.9 165 53.9
Sed0003011 Sechium edule HOM05D002282 ORTHO05D002403 1.2e-36 157.1 145 57.9
EL10Ac9g21953 Beta vulgaris HOM05D000121 ORTHO05D000102 4.7e-36 155.2 194 50.5
HanXRQChr04g0096701 Helianthus annuus HOM05D002282 ORTHO05D002403 4.7e-36 155.2 143 58.0
HanXRQChr04g0097161 Helianthus annuus HOM05D002282 ORTHO05D002403 4.7e-36 155.2 143 58.0
HanXRQChr04g0097221 Helianthus annuus HOM05D002282 ORTHO05D002403 4.7e-36 155.2 143 58.0
Sabra03G0035200 Salix brachista HOM05D002282 ORTHO05D002403 6.1e-36 154.8 203 48.8
Sed0027048 Sechium edule HOM05D002282 ORTHO05D002403 6.1e-36 154.8 145 56.6
Actinidia01770 Actinidia chinensis HOM05D002282 ORTHO05D002403 1.8e-35 153.3 119 63.0
Duzib192G0585 Durio zibethinus HOM05D002282 ORTHO05D002403 2.3e-35 152.9 115 65.2
Hund06582 Selenicereus undatus HOM05D002282 ORTHO05D002403 2.3e-35 152.9 143 56.6
arahy.Tifrunner.gnm1.ann1.CV1QS0 Arachis hypogaea HOM05D002282 ORTHO05D002403 3.0e-35 152.5 189 52.9
Eucgr.I02097 Eucalyptus grandis HOM05D002282 ORTHO05D002403 3.0e-35 152.5 175 52.0
SGA_v2.0_scaffold52G18905 Striga asiatica HOM05D002282 ORTHO05D002403 3.0e-35 152.5 177 48.6
PSO339G0191 Papaver somniferum HOM05D002282 ORTHO05D002403 5.2e-35 151.8 184 49.5
MSTRG.1400 Avicennia marina HOM05D002282 ORTHO05D002403 2.0e-34 149.8 184 48.9
BraA09t41511Z Brassica rapa HOM05D002282 ORTHO05D002403 2.0e-34 149.8 106 82.1
MELO3C023398.2 Cucumis melo HOM05D002282 ORTHO05D002403 3.4e-34 149.1 119 61.3
Medtr4g011300 Medicago truncatula HOM05D002282 ORTHO05D002403 3.4e-34 149.1 179 50.3
Aqoxy7G02081 Aquilegia oxysepala HOM05D002282 ORTHO05D002403 4.4e-34 148.7 175 51.4
Rhsim08G0216500 Rhododendron simsii HOM05D002282 ORTHO05D002403 5.7e-34 148.3 179 49.7
ECA247G0800 Erigeron canadensis HOM05D002282 ORTHO05D002403 2.2e-33 146.4 181 51.4
Migut.C01081 Erythranthe guttata HOM05D002282 ORTHO05D002403 2.8e-33 146.0 184 48.4
Lj3g0012512 Lotus japonicus HOM05D002282 ORTHO05D002403 3.7e-33 145.6 149 53.0
Psat7g255200 Pisum sativum HOM05D002282 ORTHO05D002403 6.3e-33 144.8 185 48.1
ATR0580G098 Amborella trichopoda HOM05D002282 ORTHO05D002403 9.1e-32 141.0 174 48.3
ClCG09G002680 Citrullus lanatus HOM05D002282 ORTHO05D002403 1.2e-31 140.6 208 46.2
AUR62016386 Chenopodium quinoa HOM05D002282 ORTHO05D002403 2.7e-31 139.4 107 66.4
CDE07G0270 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 5.9e-31 138.3 187 45.5
Zm00001eb294740 Zea mays HOM05D002282 ORTHO05D002403 1.0e-30 137.5 182 46.2
Glyma.08G210000 Glycine max HOM05D002282 ORTHO05D002403 1.7e-30 136.7 144 50.7
TPR.G8058 Trifolium pratense HOM05D002282 ORTHO05D002403 2.9e-30 136.0 98 67.3
HPP92_021532 Vanilla planifolia HOM05D002282 ORTHO05D002403 6.5e-30 134.8 121 55.4
Os01g0649000 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 8.6e-30 134.4 180 47.2
Os12g0634800 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 8.6e-30 134.4 180 45.0
HPP92_021486 Vanilla planifolia HOM05D002282 ORTHO05D002403 8.6e-30 134.4 124 54.0
Sc12g0008870 Simmondsia chinensis HOM05D002282 ORTHO05D002403 4.7e-28 128.6 98 63.3
SHI18081 Sapria himalayana HOM05D002282 ORTHO05D002403 3.0e-27 125.9 163 46.6
Glyma.07G032500 Glycine max HOM05D002282 ORTHO05D002403 1.2e-26 124.0 88 67.0
Glyma.13G363200 Glycine max HOM05D002282 ORTHO05D002403 7.5e-26 121.3 92 66.3
HanXRQChr00c0540g0575621 Helianthus annuus HOM05D002282 ORTHO05D002403 4.9e-25 118.6 143 49.7
vmacro18959 Vaccinium macrocarpon HOM05D002282 ORTHO05D002403 2.4e-24 116.3 192 40.1
FAN21G1567 Fragaria x ananassa HOM05D002282 ORTHO05D002403 2.7e-23 112.8 214 44.4
MD15G1388000 Malus domestica HOM05D002282 ORTHO05D002403 2.9e-22 109.4 110 55.5
unitig_747.g21506 Utricularia gibba HOM05D002282 ORTHO05D002403 3.8e-22 109.0 162 41.4
BraA09t41510Z Brassica rapa HOM05D002282 ORTHO05D002403 1.9e-21 106.7 60 91.7
MD14G1090800 Malus domestica HOM05D002282 ORTHO05D002403 8.0e-20 101.3 176 40.9
Glyma.15G010600 Glycine max HOM05D002282 ORTHO05D002403 5.4e-16 88.6 74 58.1
Pp3c7_70 Physcomitrium patens HOM05D002282 ORTHO05D002403 2.3e-14 83.2 121 38.0
Manes.04G116700 Manihot esculenta HOM05D002282 ORTHO05D002403 6.6e-14 81.6 59 64.4
HanXRQChr04g0097171 Helianthus annuus HOM05D004669 ORTHO05D005767 8.6e-14 81.3 66 59.1
Ca_20422_v3 Cicer arietinum L. HOM05D002282 ORTHO05D002403 7.3e-13 78.2 142 38.0
Mapoly0078s0006 Marchantia polymorpha HOM05D002282 ORTHO05D002403 7.3e-13 78.2 119 37.8
FvH4_3g44480 Fragaria vesca HOM05D002282 ORTHO05D002403 2.8e-12 76.3 60 60.0
CDE06G0942 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 6.8e-11 71.6 107 43.0
SEGI_26113 Sequoiadendron giganteum HOM05D002282 ORTHO05D002403 6.8e-11 71.6 89 49.4
AagrBONN_evm.TU.Sc2ySwM_362.229 Anthoceros agrestis HOM05D002282 ORTHO05D002403 1.7e-09 67.0 99 36.4
Cre12.g538500 Chlamydomonas reinhardtii HOM05D002282 ORTHO05D002403 7.8e-07 58.2 101 36.6
MD12G1094800 Malus domestica HOM05D002282 ORTHO05D002403 5.0e-06 55.5 57 54.4
CBR_g57080 Chara braunii HOM05D002282 ORTHO05D002403 6.6e-06 55.1 192 29.7


User provided reference genes

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