Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p44410 Brassica napus HOM05D006956 ORTHO05D008824 1.2e-112 409.8 206 100.0
BolC8t51982H Brassica oleracea HOM05D006956 ORTHO05D008824 4.0e-108 394.8 201 97.5
BraA09t41455Z Brassica rapa HOM05D006956 ORTHO05D008824 5.2e-108 394.4 203 96.6
A09p60820 Brassica napus HOM05D006956 ORTHO05D008824 2.6e-107 392.1 203 96.1
Thhalv10008810m.g Eutrema salsugineum HOM05D006956 ORTHO05D008824 2.3e-95 352.4 201 88.6
AL1G28750 Arabidopsis lyrata HOM05D006956 ORTHO05D008824 3.3e-94 348.6 205 86.8
AT1G16590 Arabidopsis thaliana HOM05D006956 ORTHO05D008824 7.4e-94 347.4 205 84.4
CARHR017060 Cardamine hirsuta HOM05D006956 ORTHO05D008824 2.2e-90 335.9 201 84.6
Carub.0001s1634 Capsella rubella HOM05D006956 ORTHO05D008824 6.0e-88 327.8 205 81.5
Aa31LG7G1120 Aethionema arabicum HOM05D006956 ORTHO05D008824 2.5e-86 322.4 209 77.5
Sp1g14740 Schrenkiella parvula HOM05D006956 ORTHO05D008824 1.6e-85 319.7 203 80.8
COL.COLO4_07377 Corchorus olitorius HOM05D006956 ORTHO05D008824 1.7e-82 309.7 204 72.1
THA.LOC104808124 Tarenaya hassleriana HOM05D006956 ORTHO05D008824 4.2e-81 305.1 194 76.8
TAR362G0399 Trochodendron aralioides HOM05D006956 ORTHO05D008824 1.6e-80 303.1 204 70.6
Phvul.005G057800 Phaseolus vulgaris HOM05D006956 ORTHO05D008824 3.5e-80 302.0 202 68.3
TWI39G0297 Tripterygium wilfordii HOM05D006956 ORTHO05D008824 4.6e-80 301.6 203 70.9
Nn7g38051 Nelumbo nucifera HOM05D006956 ORTHO05D008824 6.0e-80 301.2 201 72.1
Thecc.07G151600 Theobroma cacao HOM05D006956 ORTHO05D008824 1.0e-79 300.4 204 70.6
Gorai.007G335600 Gossypium raimondii HOM05D006956 ORTHO05D008824 1.3e-79 300.1 204 70.6
MD10G1203100 Malus domestica HOM05D006956 ORTHO05D008824 1.8e-79 299.7 204 68.6
Dinv19614 Davidia involucrata HOM05D006956 ORTHO05D008824 2.3e-79 299.3 201 70.1
QL04p076576 Quercus lobata HOM05D006956 ORTHO05D008824 8.7e-79 297.4 201 70.1
Gohir.A11G291500 Gossypium hirsutum HOM05D006956 ORTHO05D008824 1.9e-78 296.2 194 72.7
Manes.06G172400 Manihot esculenta HOM05D006956 ORTHO05D008824 1.9e-78 296.2 203 71.4
Psat1g012040 Pisum sativum HOM05D006956 ORTHO05D008824 7.4e-78 294.3 192 71.4
Medtr2g069340 Medicago truncatula HOM05D006956 ORTHO05D008824 1.3e-77 293.5 202 66.3
TPR.G9744 Trifolium pratense HOM05D006956 ORTHO05D008824 2.1e-77 292.7 202 66.3
Atru.chr9.1519 Acer truncatum HOM05D006956 ORTHO05D008824 6.3e-77 291.2 203 67.5
Potri.001G439000 Populus trichocarpa HOM05D006956 ORTHO05D008824 6.3e-77 291.2 197 71.1
Lalb_Chr20g0108711 Lupinus albus HOM05D006956 ORTHO05D008824 8.2e-77 290.8 202 66.8
CSS0020916 Camellia sinensis var. sinensis HOM05D006956 ORTHO05D008824 1.1e-76 290.4 190 70.5
Lj3g0018815 Lotus japonicus HOM05D006956 ORTHO05D008824 2.4e-76 289.3 202 65.3
Haze_03154 Corylus avellana HOM05D006956 ORTHO05D008824 3.1e-76 288.9 201 67.7
Glyma.15G256600 Glycine max HOM05D006956 ORTHO05D008824 3.1e-76 288.9 202 66.8
VMungo1080G0523 Vigna mungo HOM05D006956 ORTHO05D008824 3.1e-76 288.9 202 65.8
CiPaw.11G066300 Carya illinoinensis HOM05D006956 ORTHO05D008824 4.1e-76 288.5 201 67.2
Sabra16G0296900 Salix brachista HOM05D006956 ORTHO05D008824 4.1e-76 288.5 204 69.1
Ca_03670_v3 Cicer arietinum L. HOM05D006956 ORTHO05D008824 5.3e-76 288.1 202 66.3
Cc05_g16140 Coffea canephora HOM05D006956 ORTHO05D008824 1.2e-75 287.0 205 67.3
Rhsim04G0005600 Rhododendron simsii HOM05D006956 ORTHO05D008824 1.2e-75 287.0 202 67.3
Cfa010806 Carpinus fangiana HOM05D006956 ORTHO05D008824 2.0e-75 286.2 201 66.7
Solyc09g098220.3 Solanum lycopersicum HOM05D006956 ORTHO05D008824 2.6e-75 285.8 202 65.8
Sopen09g036160 Solanum pennellii HOM05D006956 ORTHO05D008824 2.6e-75 285.8 202 65.8
MELO3C019670.2 Cucumis melo HOM05D006956 ORTHO05D008824 3.4e-75 285.4 191 70.7
Peaxi162Scf00286g00448 Petunia axillaris HOM05D006956 ORTHO05D008824 1.3e-74 283.5 202 65.3
FvH4_3g15651 Fragaria vesca HOM05D006956 ORTHO05D008824 1.7e-74 283.1 201 67.7
CsaV3_6G013760 Cucumis sativus L. HOM05D006956 ORTHO05D008824 3.8e-74 282.0 192 70.3
ClCG02G018480 Citrullus lanatus HOM05D006956 ORTHO05D008824 6.5e-74 281.2 210 65.7
CAN.G710.39 Capsicum annuum HOM05D006956 ORTHO05D008824 8.5e-74 280.8 203 64.5
vmacro00957 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 8.5e-74 280.8 201 65.7
arahy.Tifrunner.gnm1.ann1.JC2BA5 Arachis hypogaea HOM05D006956 ORTHO05D008824 1.1e-73 280.4 206 64.1
MSTRG.13068 Avicennia marina HOM05D006956 ORTHO05D008824 1.1e-73 280.4 201 65.2
Prupe.4G139000 Prunus persica HOM05D006956 ORTHO05D008824 1.1e-73 280.4 194 67.5
RcHm_v2.0_Chr5g0026331 Rosa chinensis HOM05D006956 ORTHO05D008824 2.5e-73 279.3 201 66.2
Hma1.2p1_0334F.1_g128720 Hydrangea macrophylla HOM05D006956 ORTHO05D008824 4.2e-73 278.5 201 64.7
HPP92_011671 Vanilla planifolia HOM05D006956 ORTHO05D008824 4.2e-73 278.5 196 65.3
Lj3g0016125 Lotus japonicus HOM05D006956 ORTHO05D008824 5.5e-73 278.1 202 64.9
CSS0000379 Camellia sinensis var. sinensis HOM05D006956 ORTHO05D008824 9.3e-73 277.3 192 68.8
FAN21G1707 Fragaria x ananassa HOM05D006956 ORTHO05D008824 9.3e-73 277.3 201 65.7
CANSAT54G1214 Cannabis sativa HOM05D006956 ORTHO05D008824 1.2e-72 276.9 200 68.0
Ciclev10022296m.g Citrus clementina HOM05D006956 ORTHO05D008824 2.1e-72 276.2 201 66.2
Migut.H01688 Erythranthe guttata HOM05D006956 ORTHO05D008824 2.7e-72 275.8 204 62.7
Eucgr.A00498 Eucalyptus grandis HOM05D006956 ORTHO05D008824 3.9e-71 271.9 202 61.9
PGR142G1185 Punica granatum HOM05D006956 ORTHO05D008824 5.1e-71 271.6 197 68.0
FAN11G3326 Fragaria x ananassa HOM05D006956 ORTHO05D008824 8.7e-71 270.8 218 61.9
Aqoxy1G01495 Aquilegia oxysepala HOM05D006956 ORTHO05D008824 1.9e-70 269.6 199 64.8
arahy.Tifrunner.gnm1.ann1.82TPB7 Arachis hypogaea HOM05D006956 ORTHO05D008824 7.4e-70 267.7 237 56.5
Zm00001eb198240 Zea mays HOM05D006956 ORTHO05D008824 1.2e-67 260.4 199 62.8
Nitab4.5_0001526g0100 Nicotiana tabacum HOM05D006956 ORTHO05D008824 2.6e-67 259.2 220 57.3
SalBow5G4858 Salvia bowleyana HOM05D006956 ORTHO05D008824 4.5e-67 258.5 200 58.0
CDE05G1956 Ceratophyllum demersum HOM05D003342 ORTHO05D003861 7.7e-67 257.7 202 63.9
AUR62042418 Chenopodium quinoa HOM05D006956 ORTHO05D008824 3.8e-66 255.4 189 64.0
SGA_v2.0_scaffold49G18176 Striga asiatica HOM05D006956 ORTHO05D008824 5.0e-66 255.0 198 63.1
GSVIVG01020406001 Vitis vinifera HOM05D006956 ORTHO05D008824 5.0e-66 255.0 175 69.7
PSO223G0077 Papaver somniferum HOM05D006956 ORTHO05D008824 7.2e-65 251.1 198 62.1
AUR62026907 Chenopodium quinoa HOM05D006956 ORTHO05D008824 2.7e-64 249.2 192 62.0
PSO210G3417 Papaver somniferum HOM05D006956 ORTHO05D008824 1.4e-63 246.9 195 61.0
Cfa010808 Carpinus fangiana HOM05D006956 ORTHO05D008824 3.0e-63 245.7 180 64.4
PGSC0003DMG400014067 Solanum tuberosum HOM05D006956 ORTHO05D008466 2.8e-61 239.2 166 65.1
MBI18_g45405_MAGBIO Magnolia biondii HOM05D006956 ORTHO05D008824 1.4e-60 236.9 156 69.2
Sc08g0007560 Simmondsia chinensis HOM05D006956 ORTHO05D008824 5.2e-55 218.4 156 64.7
Sed0013658 Sechium edule HOM05D006956 ORTHO05D008824 8.8e-55 217.6 156 67.3
HanXRQChr08g0231891 Helianthus annuus HOM05D006956 ORTHO05D008824 3.3e-54 215.7 202 52.0
ECA247G3084 Erigeron canadensis HOM05D006956 ORTHO05D008824 1.4e-52 210.3 196 51.0
AagrBONN_evm.TU.Sc2ySwM_368.712 Anthoceros agrestis HOM05D006956 ORTHO05D008824 2.0e-46 189.9 189 47.6
QL04p076191 Quercus lobata HOM05D006956 ORTHO05D008824 2.7e-43 179.5 125 64.8
QL93p0133_0021 Quercus lobata HOM05D006956 ORTHO05D008824 2.7e-43 179.5 125 64.8
Prupe.4G141800 Prunus persica HOM05D006956 ORTHO05D008824 7.7e-43 177.9 124 71.8
FAN25G3578 Fragaria x ananassa HOM05D006956 ORTHO05D008824 1.7e-42 176.8 137 65.0
RcHm_v2.0_Chr5g0026311 Rosa chinensis HOM05D006956 ORTHO05D008824 3.8e-42 175.6 201 47.3
Lsat_1_v5_gn_6_63040 Lactuca sativa HOM05D006956 ORTHO05D008824 1.0e-39 167.5 168 50.6
Pp3c4_6830 Physcomitrium patens HOM05D006956 ORTHO05D008824 1.0e-39 167.5 190 44.7
SMO340G0149 Selaginella moellendorffii HOM05D006956 ORTHO05D008824 1.4e-39 167.2 190 41.6
MD17G1180100 Malus domestica HOM05D006956 ORTHO05D008824 6.8e-39 164.9 126 67.5
Pp3c4_6840 Physcomitrium patens HOM05D006956 ORTHO05D008824 2.0e-38 163.3 186 40.9
Actinidia35432 Actinidia chinensis HOM05D006956 ORTHO05D008824 3.4e-38 162.5 146 59.6
Mapoly0023s0023 Marchantia polymorpha HOM05D006956 ORTHO05D008824 3.8e-34 149.1 127 55.1
Prupe.4G139100 Prunus persica HOM05D006956 ORTHO05D008824 6.5e-34 148.3 164 48.8
SEGI_37897 Sequoiadendron giganteum HOM05D006956 ORTHO05D008824 1.9e-33 146.7 128 51.6
FAN16G1261 Fragaria x ananassa HOM05D006956 ORTHO05D008824 1.3e-26 124.0 115 59.1
vmacro22747 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 2.8e-24 116.3 180 38.9
Glyma.08G170300 Glycine max HOM05D006956 ORTHO05D008824 4.0e-23 112.5 158 42.4
vmacro09782 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 1.3e-21 107.5 63 68.3
ATR0753G159 Amborella trichopoda HOM05D006956 ORTHO05D008824 6.4e-21 105.1 89 61.8
Lju41A37T48 Lonicera japonica HOM05D006956 ORTHO05D008824 1.1e-20 104.4 84 59.5
Potri.011G142501 Populus trichocarpa HOM05D006956 ORTHO05D008824 3.2e-20 102.8 88 55.7
MBI18_g44288_MAGBIO Magnolia biondii HOM05D006956 ORTHO05D008824 5.4e-20 102.1 71 69.0
Cre13.g575333 Chlamydomonas reinhardtii HOM05D006956 ORTHO05D008824 7.8e-19 98.2 192 33.9
MD05G1220700 Malus domestica HOM05D006956 ORTHO05D008824 1.2e-16 90.9 89 51.7
Lalb_Chr25g0284921 Lupinus albus HOM05D006956 ORTHO05D008824 3.6e-16 89.4 160 35.6
Cpa.g.sc67.70 Carica papaya HOM05D006956 ORTHO05D008824 8.9e-15 84.7 82 53.7
RcHm_v2.0_Chr5g0031421 Rosa chinensis HOM05D006956 ORTHO05D008824 2.0e-11 73.6 107 43.0
SHI21449 Sapria himalayana HOM05D000257 ORTHO05D008466 2.1e-08 63.5 38 60.5
MCO02G468 Micromonas commoda HOM05D006956 ORTHO05D008824 5.8e-06 55.5 85 41.2


User provided reference genes

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