Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p43580 Brassica napus HOM05D004143 ORTHO05D004816 1.6e-266 922.2 458 100.0
BolC8t51904H Brassica oleracea HOM05D004143 ORTHO05D004816 2.8e-263 911.4 458 98.9
A09p60140 Brassica napus HOM05D004143 ORTHO05D004816 4.8e-263 910.6 458 98.9
BraA09t41383Z Brassica rapa HOM05D004143 ORTHO05D004816 2.4e-262 908.3 458 98.7
Sp1g16050 Schrenkiella parvula HOM05D004143 ORTHO05D004816 2.0e-240 835.5 461 90.2
Thhalv10007558m.g Eutrema salsugineum HOM05D004143 ORTHO05D004816 9.8e-240 833.2 461 89.2
Carub.0001s1769 Capsella rubella HOM05D004143 ORTHO05D004816 4.6e-237 824.3 461 88.5
CARHR018600 Cardamine hirsuta HOM05D004143 ORTHO05D004816 4.3e-235 817.8 448 90.4
AL1G30350 Arabidopsis lyrata HOM05D004143 ORTHO05D004816 2.1e-234 815.5 451 89.4
AT1G18000 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 3.6e-234 814.7 460 88.0
AT1G18010 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 3.6e-234 814.7 460 88.0
Aa31LG7G3020 Aethionema arabicum HOM05D004143 ORTHO05D004816 4.4e-224 781.2 452 84.1
THA.LOC104814953 Tarenaya hassleriana HOM05D004143 ORTHO05D004816 1.4e-214 749.6 449 82.0
Cpa.g.sc3.179 Carica papaya HOM05D004143 ORTHO05D004816 8.1e-202 707.2 424 79.5
COL.COLO4_04975 Corchorus olitorius HOM05D004143 ORTHO05D004816 2.0e-200 702.6 446 76.9
Sabra15G0000900 Salix brachista HOM05D004143 ORTHO05D004816 9.9e-200 700.3 434 77.4
TAR375G1015 Trochodendron aralioides HOM05D004143 ORTHO05D004816 2.4e-198 695.7 439 76.5
Thecc.05G121800 Theobroma cacao HOM05D004143 ORTHO05D004816 1.6e-197 693.0 441 77.3
Potri.012G005100 Populus trichocarpa HOM05D004143 ORTHO05D004816 2.7e-197 692.2 434 77.2
TWI23G0162 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 3.5e-197 691.8 446 75.8
Sabra12G0000800 Salix brachista HOM05D004143 ORTHO05D004816 5.1e-196 688.0 434 76.5
Sabra12G0007100 Salix brachista HOM05D004143 ORTHO05D004816 5.1e-196 688.0 434 76.5
Gohir.A13G001800 Gossypium hirsutum HOM05D004143 ORTHO05D004816 2.1e-194 682.6 430 77.4
Manes.01G045000 Manihot esculenta HOM05D004143 ORTHO05D004816 6.2e-194 681.0 424 76.9
TAR629G3485 Trochodendron aralioides HOM05D004143 ORTHO05D004816 2.4e-193 679.1 424 76.9
PGR142G3661 Punica granatum HOM05D004143 ORTHO05D004816 2.6e-192 675.6 434 76.0
Gohir.D13G001200 Gossypium hirsutum HOM05D004143 ORTHO05D004816 1.3e-191 673.3 430 76.5
Gorai.013G001100 Gossypium raimondii HOM05D004143 ORTHO05D004816 1.3e-191 673.3 430 76.5
Atru.chr12.2532 Acer truncatum HOM05D004143 ORTHO05D004816 6.5e-191 671.0 437 74.8
Ciclev10024344m.g Citrus clementina HOM05D004143 ORTHO05D004816 8.4e-191 670.6 435 74.7
TAR629G1812 Trochodendron aralioides HOM05D004143 ORTHO05D004816 8.4e-191 670.6 423 76.4
Atru.chr12.2510 Acer truncatum HOM05D004143 ORTHO05D004816 1.4e-190 669.8 436 74.8
CANSAT11G0263 Cannabis sativa HOM05D004143 ORTHO05D004816 2.5e-190 669.1 440 73.6
TWI23G0209 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 5.5e-190 667.9 424 76.2
Prupe.2G321300 Prunus persica HOM05D004143 ORTHO05D004816 7.1e-190 667.5 443 72.5
Ciclev10019944m.g Citrus clementina HOM05D004143 ORTHO05D004816 1.2e-189 666.8 431 74.2
CANSAT01G3090 Cannabis sativa HOM05D004143 ORTHO05D004816 1.3e-188 663.3 448 72.1
Cfa016134 Carpinus fangiana HOM05D004143 ORTHO05D004816 3.0e-188 662.1 428 74.8
MD07G1302200 Malus domestica HOM05D004143 ORTHO05D004816 6.7e-188 661.0 439 72.4
DCAR_010563 Daucus carota HOM05D004143 ORTHO05D004816 1.5e-187 659.8 452 71.2
Migut.F00972 Erythranthe guttata HOM05D004143 ORTHO05D004816 7.4e-187 657.5 454 71.8
Lj3A892T30 Lonicera japonica HOM05D004143 ORTHO05D004816 2.1e-186 656.0 428 73.8
MD01G1230900 Malus domestica HOM05D004143 ORTHO05D004816 2.1e-186 656.0 443 71.3
Duzib138G0998 Durio zibethinus HOM05D004143 ORTHO05D004816 2.8e-186 655.6 425 73.6
Haze_00327 Corylus avellana HOM05D004143 ORTHO05D004816 8.2e-186 654.1 429 73.4
ClCG10G008670 Citrullus lanatus HOM05D004143 ORTHO05D004816 1.4e-185 653.3 444 70.7
Dinv17282 Davidia involucrata HOM05D004143 ORTHO05D004816 1.4e-185 653.3 441 73.0
Oeu017360.1 Olea europaea HOM05D004143 ORTHO05D004816 2.4e-185 652.5 450 71.6
MSTRG.23 Avicennia marina HOM05D004143 ORTHO05D004816 3.1e-185 652.1 446 71.1
DCAR_014598 Daucus carota HOM05D004143 ORTHO05D004816 3.1e-185 652.1 435 73.1
CiPaw.05G208300 Carya illinoinensis HOM05D004143 ORTHO05D004816 1.2e-184 650.2 425 74.8
QL09p006127 Quercus lobata HOM05D004143 ORTHO05D004816 1.5e-184 649.8 448 71.2
Hund09750 Selenicereus undatus HOM05D004143 ORTHO05D004816 1.5e-184 649.8 425 74.1
CsaV3_4G009000 Cucumis sativus L. HOM05D004143 ORTHO05D004816 2.0e-184 649.4 441 70.7
HPP92_015066 Vanilla planifolia HOM05D004143 ORTHO05D004816 3.4e-184 648.7 433 72.5
arahy.Tifrunner.gnm1.ann1.JUEJ49 Arachis hypogaea HOM05D004143 ORTHO05D004816 4.5e-184 648.3 436 72.7
Sed0008601 Sechium edule HOM05D004143 ORTHO05D004816 4.5e-184 648.3 424 73.3
Thecc.01G329300 Theobroma cacao HOM05D004143 ORTHO05D004816 7.6e-184 647.5 424 72.6
vmacro06470 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 7.6e-184 647.5 424 74.3
FvH4_7g33150 Fragaria vesca HOM05D004143 ORTHO05D004816 1.0e-183 647.1 434 71.7
FAN10G3640 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.0e-183 647.1 434 71.7
FAN10G4294 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.0e-183 647.1 434 71.7
arahy.Tifrunner.gnm1.ann1.QS6CEN Arachis hypogaea HOM05D004143 ORTHO05D004816 1.3e-183 646.7 433 73.0
Lsat_1_v5_gn_2_3341 Lactuca sativa HOM05D004143 ORTHO05D004816 1.3e-183 646.7 431 73.1
MELO3C018981.2 Cucumis melo HOM05D004143 ORTHO05D004816 1.7e-183 646.4 425 73.2
arahy.Tifrunner.gnm1.ann1.XXMI3I Arachis hypogaea HOM05D004143 ORTHO05D004816 2.2e-183 646.0 433 73.2
CsaV3_4G009010 Cucumis sativus L. HOM05D004143 ORTHO05D004816 2.9e-183 645.6 425 73.4
RcHm_v2.0_Chr1g0383221 Rosa chinensis HOM05D004143 ORTHO05D004816 2.9e-183 645.6 435 71.3
FAN03G2936 Fragaria x ananassa HOM05D004143 ORTHO05D004816 6.5e-183 644.4 434 71.2
FAN03G3145 Fragaria x ananassa HOM05D004143 ORTHO05D004816 6.5e-183 644.4 434 71.2
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 6.5e-183 644.4 430 72.3
Rhsim03G0218000 Rhododendron simsii HOM05D004143 ORTHO05D004816 6.5e-183 644.4 448 71.7
Cfa016133 Carpinus fangiana HOM05D004143 ORTHO05D004816 1.1e-182 643.7 428 72.4
DCAR_020387 Daucus carota HOM05D004143 ORTHO05D004816 1.1e-182 643.7 444 70.5
MD01G1230800 Malus domestica HOM05D004143 ORTHO05D004816 1.1e-182 643.7 443 69.8
MELO3C018979.2 Cucumis melo HOM05D004143 ORTHO05D004816 1.9e-182 642.9 425 72.9
Hma1.2p1_0115F.1_g055680 Hydrangea macrophylla HOM05D004143 ORTHO05D004816 2.5e-182 642.5 434 71.2
PSO063G4813 Papaver somniferum HOM05D004143 ORTHO05D004816 2.5e-182 642.5 430 72.6
FvH4_7g33230 Fragaria vesca HOM05D004143 ORTHO05D004816 7.2e-182 641.0 434 71.0
Aqoxy5G04387 Aquilegia oxysepala HOM05D004143 ORTHO05D004816 1.6e-181 639.8 430 71.4
vmacro06469 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 1.6e-181 639.8 430 72.8
CSS0027564 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 2.1e-181 639.4 446 69.5
Actinidia08713 Actinidia chinensis HOM05D004143 ORTHO05D004816 2.7e-181 639.0 429 72.3
GSVIVG01038674001 Vitis vinifera HOM05D004143 ORTHO05D004816 2.7e-181 639.0 424 73.1
ATR0579G031 Amborella trichopoda HOM05D004143 ORTHO05D004816 3.6e-181 638.6 447 68.9
MBI04_g26128_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 4.6e-181 638.3 430 71.4
EL10Ac3g05140 Beta vulgaris HOM05D004143 ORTHO05D004816 7.9e-181 637.5 429 72.5
Sed0000759 Sechium edule HOM05D004143 ORTHO05D004816 1.0e-180 637.1 428 72.4
FAN01G2649 Fragaria x ananassa HOM05D004143 ORTHO05D004816 2.3e-180 636.0 434 70.5
Oeu017361.2 Olea europaea HOM05D004143 ORTHO05D004816 8.7e-180 634.0 432 72.2
Eucgr.K00891 Eucalyptus grandis HOM05D004143 ORTHO05D004816 1.1e-179 633.6 433 69.3
SalBow4G1948 Salvia bowleyana HOM05D004143 ORTHO05D004816 1.1e-179 633.6 435 71.5
Actinidia34284 Actinidia chinensis HOM05D004143 ORTHO05D004816 2.5e-179 632.5 429 71.3
Cc02_g00660 Coffea canephora HOM05D004143 ORTHO05D004816 2.5e-179 632.5 439 69.7
HanXRQChr08g0225831 Helianthus annuus HOM05D004143 ORTHO05D004816 3.3e-179 632.1 448 68.1
Rhsim03G0217900 Rhododendron simsii HOM05D004143 ORTHO05D004816 1.6e-178 629.8 430 72.1
Eucgr.K00457 Eucalyptus grandis HOM05D004143 ORTHO05D004816 2.2e-178 629.4 407 75.7
Sc19g0000410 Simmondsia chinensis HOM05D004143 ORTHO05D004816 1.5e-176 623.2 424 71.9
MD01G1230700 Malus domestica HOM05D004143 ORTHO05D004816 4.5e-176 621.7 429 68.5
CAN.G303.51 Capsicum annuum HOM05D004143 ORTHO05D004816 5.9e-176 621.3 458 66.8
Sopen03g021740 Solanum pennellii HOM05D004143 ORTHO05D004816 2.5e-174 615.9 426 69.7
Ca_16836_v3 Cicer arietinum L. HOM05D004143 ORTHO05D004816 7.2e-174 614.4 432 69.9
Ah.13g070980 Amaranthus hybridus HOM05D004143 ORTHO05D004816 1.2e-173 613.6 442 68.1
Gorai.007G115000 Gossypium raimondii HOM05D004143 ORTHO05D004816 2.1e-173 612.8 439 68.8
Phvul.009G039900 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 2.1e-173 612.8 436 67.9
AUR62028110 Chenopodium quinoa HOM05D004143 ORTHO05D004816 3.6e-173 612.1 413 72.6
Lj1g0023378 Lotus japonicus HOM05D004143 ORTHO05D004816 6.1e-173 611.3 430 69.5
Glyma.02G221600 Glycine max HOM05D004143 ORTHO05D004816 7.9e-173 610.9 424 70.3
PGSC0003DMG400000551 Solanum tuberosum HOM05D004143 ORTHO05D004816 7.9e-173 610.9 443 66.8
Eucgr.K00892 Eucalyptus grandis HOM05D004143 ORTHO05D004816 1.4e-172 610.1 439 66.5
Medtr3g093270 Medicago truncatula HOM05D004143 ORTHO05D004816 1.4e-172 610.1 424 70.3
SGA_v2.0_scaffold44G16868 Striga asiatica HOM05D004143 ORTHO05D004816 1.4e-172 610.1 427 70.7
VMungo1309G1903 Vigna mungo HOM05D004143 ORTHO05D004816 1.8e-172 609.8 436 68.6
Actinidia18690 Actinidia chinensis HOM05D004143 ORTHO05D004816 6.7e-172 607.8 425 68.9
Glyma.04G226100 Glycine max HOM05D004143 ORTHO05D004816 8.8e-172 607.4 430 68.6
Glyma.06G138800 Glycine max HOM05D004143 ORTHO05D004816 1.1e-171 607.1 424 69.8
Nitab4.5_0004582g0010 Nicotiana tabacum HOM05D004143 ORTHO05D004816 1.5e-171 606.7 426 68.8
arahy.Tifrunner.gnm1.ann1.YIM4MN Arachis hypogaea HOM05D004143 ORTHO05D004816 2.6e-171 605.9 425 69.4
Nitab4.5_0000021g0150 Nicotiana tabacum HOM05D004143 ORTHO05D004816 2.6e-171 605.9 425 69.2
arahy.Tifrunner.gnm1.ann1.RI5PYK Arachis hypogaea HOM05D004143 ORTHO05D004816 3.3e-171 605.5 427 69.3
AUR62005954 Chenopodium quinoa HOM05D004143 ORTHO05D004816 1.3e-170 603.6 402 73.4
Medtr3g093290 Medicago truncatula HOM05D004143 ORTHO05D004816 3.7e-170 602.1 438 66.9
SGA_v2.0_scaffold18G08489 Striga asiatica HOM05D004143 ORTHO05D004816 6.3e-170 601.3 443 65.9
Lj1g0001658 Lotus japonicus HOM05D004143 ORTHO05D004816 2.4e-169 599.4 425 69.6
Psat0s1240g0080 Pisum sativum HOM05D004143 ORTHO05D004816 5.3e-169 598.2 436 66.7
Lalb_Chr11g0067541 Lupinus albus HOM05D004143 ORTHO05D004816 6.9e-169 597.8 438 67.4
Phvul.008G188500 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 2.6e-168 595.9 423 70.0
SEGI_09338 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 5.9e-168 594.7 425 66.8
ClCG10G008690 Citrullus lanatus HOM05D004143 ORTHO05D004816 1.3e-167 593.6 406 70.4
VMungo0647G0805 Vigna mungo HOM05D004143 ORTHO05D004816 1.1e-166 590.5 423 69.3
HanXRQChr15g0472111 Helianthus annuus HOM05D004143 ORTHO05D004816 1.9e-166 589.7 428 65.9
MBI04_g26129_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 9.4e-166 587.4 430 67.7
CSS0024166 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 1.6e-165 586.6 439 65.8
Lalb_Chr23g0272031 Lupinus albus HOM05D004143 ORTHO05D004816 6.1e-165 584.7 423 66.2
ECA233G4741 Erigeron canadensis HOM05D004143 ORTHO05D000001 8.8e-164 580.9 388 71.9
Zm00001eb418750 Zea mays HOM05D004143 ORTHO05D004816 7.4e-163 577.8 425 66.8
Nn4g24300 Nelumbo nucifera HOM05D004143 ORTHO05D004816 9.7e-163 577.4 387 71.8
Atru.chr13.384 Acer truncatum HOM05D004143 ORTHO05D004816 1.7e-162 576.6 389 71.7
Duzib128G1652 Durio zibethinus HOM05D004143 ORTHO05D004816 2.4e-161 572.8 365 77.5
ClCG00G006070 Citrullus lanatus HOM05D004143 ORTHO05D004816 1.0e-159 567.4 365 74.0
Gohir.A11G102900 Gossypium hirsutum HOM05D004143 ORTHO05D004816 1.5e-158 563.5 421 66.7
Atru.chr5.814 Acer truncatum HOM05D004143 ORTHO05D004816 5.5e-158 561.6 386 71.0
Potri.012G011000 Populus trichocarpa HOM05D004143 ORTHO05D004816 2.7e-144 516.2 434 61.5
MD01G1230600 Malus domestica HOM05D004143 ORTHO05D004816 7.2e-142 508.1 379 65.4
Gohir.D11G107400 Gossypium hirsutum HOM05D004143 ORTHO05D004816 1.5e-139 500.4 424 61.1
SEGI_21716 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 3.7e-138 495.7 433 57.0
SMO340G0156 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 1.0e-135 487.6 421 58.7
SEGI_05818 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 4.0e-132 475.7 434 54.4
SMO239G0122 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 6.8e-132 474.9 426 56.1
COL.COLO4_23082 Corchorus olitorius HOM05D004143 ORTHO05D004816 5.4e-121 438.7 441 52.4
Os04g0105400 Oryza sativa ssp. japonica HOM05D004143 ORTHO05D004816 3.7e-114 416.0 317 65.0
unitig_578.g16681 Utricularia gibba HOM05D004143 ORTHO05D004816 5.4e-113 412.1 283 70.7
Mapoly0086s0058 Marchantia polymorpha HOM05D004143 ORTHO05D004816 1.3e-103 380.9 433 47.3
SEGI_06275 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.9e-97 360.5 273 64.1
CDE02G4135 Ceratophyllum demersum HOM05D004143 ORTHO05D004816 7.3e-94 348.6 424 44.8
Pp3c23_3660 Physcomitrium patens HOM05D004143 ORTHO05D004816 6.2e-93 345.5 436 43.8
Cc02_g00640 Coffea canephora HOM05D004143 ORTHO05D004816 1.5e-91 340.9 237 69.2
TPR.G29284 Trifolium pratense HOM05D004143 ORTHO05D004816 5.8e-91 339.0 231 70.6
AagrBONN_evm.TU.Sc2ySwM_344.1928 Anthoceros agrestis HOM05D004143 ORTHO05D004816 1.9e-81 307.4 381 43.8
MBI04_g09827_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 2.9e-74 283.5 272 59.6
Cpa.g.c30701.1 Carica papaya HOM05D004143 ORTHO05D004816 2.7e-64 250.4 150 78.7
Cc02_g00650 Coffea canephora HOM05D004143 ORTHO05D004816 8.8e-55 218.8 156 69.2
SEGI_07746 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.3e-42 178.3 113 76.1
Actinidia28288 Actinidia chinensis HOM05D004143 ORTHO05D004816 2.0e-38 164.5 127 63.0
SEGI_40229 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 4.5e-35 153.3 95 74.7
Solyc03g080020.4 Solanum lycopersicum HOM05D004143 ORTHO05D004816 1.8e-31 141.4 424 27.4
Peaxi162Scf01026g00266 Petunia axillaris HOM05D004143 ORTHO05D004816 3.3e-25 120.6 83 69.9
VMungo1383G1334 Vigna mungo HOM05D004143 ORTHO05D432805 3.5e-19 100.5 84 57.1
GSVIVG01027551001 Vitis vinifera HOM05D000016 ORTHO05D000109 4.0e-15 87.0 78 55.1
TPR.G22104 Trifolium pratense HOM05D004143 ORTHO05D004816 2.2e-13 81.3 55 67.3
unitig_578.g16680 Utricularia gibba HOM05D004143 ORTHO05D004816 1.9e-09 68.2 79 46.8
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 2.5e-09 67.8 196 30.6
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 4.4e-06 57.0 226 23.9
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 9.8e-06 55.8 43 62.8


User provided reference genes

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