Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p43140 Brassica napus HOM05D004701 ORTHO05D005220 0.0e+00 1354.0 700 100.0
BcaC07g41307 Brassica carinata HOM05D004701 ORTHO05D005220 0.0e+00 1320.1 700 98.1
A09p59760 Brassica napus HOM05D004701 ORTHO05D005220 0.0e+00 1281.2 731 93.0
BcaB03g14489 Brassica carinata HOM05D004701 ORTHO05D005220 0.0e+00 1265.8 705 93.0
BolC8t51869H Brassica oleracea HOM05D004701 ORTHO05D005220 0.0e+00 1232.6 711 92.0
Sp1g16680 Schrenkiella parvula HOM05D004701 ORTHO05D005220 0.0e+00 1201.4 706 86.4
AL1G31150 Arabidopsis lyrata HOM05D004701 ORTHO05D005220 0.0e+00 1164.8 699 85.1
BraA09t41353Z Brassica rapa HOM05D004701 ORTHO05D005220 0.0e+00 1163.7 750 84.7
Carub.0001s1833 Capsella rubella HOM05D004701 ORTHO05D005220 0.0e+00 1162.9 710 83.8
AT1G18700 Arabidopsis thaliana HOM05D004701 ORTHO05D005220 0.0e+00 1147.5 698 83.1
Thhalv10006967m.g Eutrema salsugineum HOM05D004701 ORTHO05D005220 0.0e+00 1136.3 646 88.2
Aa31LG7G3460 Aethionema arabicum HOM05D004701 ORTHO05D005220 4.7e-310 1067.4 762 72.7
THA.LOC104808258 Tarenaya hassleriana HOM05D004701 ORTHO05D005220 5.4e-282 974.2 693 73.2
Duzib205G0738 Durio zibethinus HOM05D004701 ORTHO05D005220 5.9e-228 794.7 699 56.9
Thecc.03G092900 Theobroma cacao HOM05D004701 ORTHO05D005220 6.5e-227 791.2 693 57.6
Gorai.003G098100 Gossypium raimondii HOM05D004701 ORTHO05D005220 6.1e-225 784.6 700 57.7
Gohir.D03G094000 Gossypium hirsutum HOM05D004701 ORTHO05D005220 1.0e-224 783.9 692 57.7
Gohir.A03G067500 Gossypium hirsutum HOM05D004701 ORTHO05D005220 8.3e-222 774.2 639 59.8
TWI81G0545 Tripterygium wilfordii HOM05D004701 ORTHO05D005220 3.1e-221 772.3 696 55.3
Duzib068G0813 Durio zibethinus HOM05D004701 ORTHO05D005220 1.2e-220 770.4 694 56.6
Prupe.5G196200 Prunus persica HOM05D004701 ORTHO05D005220 5.0e-219 765.0 704 55.4
MD06G1196700 Malus domestica HOM05D004701 ORTHO05D005220 1.8e-216 756.5 705 53.0
TAR629G3124 Trochodendron aralioides HOM05D004701 ORTHO05D005220 3.0e-216 755.7 695 53.8
GSVIVG01007980001 Vitis vinifera HOM05D004701 ORTHO05D005220 1.2e-215 753.8 712 53.9
Ciclev10019092m.g Citrus clementina HOM05D004701 ORTHO05D005220 3.4e-215 752.3 710 53.8
QL10p017494 Quercus lobata HOM05D004701 ORTHO05D005220 3.4e-215 752.3 710 55.8
Cfa018922 Carpinus fangiana HOM05D004701 ORTHO05D005220 6.4e-214 748.0 711 53.6
CiPaw.12G011900 Carya illinoinensis HOM05D004701 ORTHO05D005220 8.3e-214 747.7 708 54.1
Atru.chr9.198 Acer truncatum HOM05D004701 ORTHO05D005220 1.4e-213 746.9 695 53.4
Manes.14G080700 Manihot esculenta HOM05D004701 ORTHO05D005220 5.4e-213 745.0 697 53.2
Dinv38737 Davidia involucrata HOM05D004701 ORTHO05D005220 1.7e-211 740.0 633 56.9
FvH4_5g14650 Fragaria vesca HOM05D004701 ORTHO05D005220 2.3e-211 739.6 692 52.3
Potri.017G112200 Populus trichocarpa HOM05D004701 ORTHO05D005220 2.5e-210 736.1 696 53.7
CANSAT80G1745 Cannabis sativa HOM05D004701 ORTHO05D005220 4.3e-210 735.3 705 53.2
Aqoxy3G03462 Aquilegia oxysepala HOM05D004701 ORTHO05D005220 2.8e-209 732.6 698 54.3
Nn4g23237 Nelumbo nucifera HOM05D004701 ORTHO05D005220 1.0e-208 730.7 647 55.0
Eucgr.B00530 Eucalyptus grandis HOM05D004701 ORTHO05D005220 2.0e-207 726.5 704 54.0
RcHm_v2.0_Chr7g0181841 Rosa chinensis HOM05D004701 ORTHO05D005220 2.2e-206 723.0 691 52.0
PGR083G0417 Punica granatum HOM05D004701 ORTHO05D005220 7.0e-205 718.0 696 55.5
PSO832G0806 Papaver somniferum HOM05D004701 ORTHO05D005220 2.0e-204 716.5 705 54.9
MELO3C017186.2 Cucumis melo HOM05D004701 ORTHO05D005220 6.0e-204 714.9 704 52.8
Sabra17G0093000 Salix brachista HOM05D004701 ORTHO05D005220 7.8e-204 714.5 700 51.7
Sed0001989 Sechium edule HOM05D004701 ORTHO05D005220 1.7e-203 713.4 698 53.3
FAN18G0140 Fragaria x ananassa HOM05D004701 ORTHO05D005220 6.6e-203 711.4 692 50.9
CsaV3_1G002500 Cucumis sativus L. HOM05D004701 ORTHO05D005220 2.5e-202 709.5 704 51.7
Lj1g0024661 Lotus japonicus HOM05D004701 ORTHO05D005220 7.3e-202 708.0 701 50.6
Medtr3g435140 Medicago truncatula HOM05D004701 ORTHO05D005220 2.3e-200 703.0 704 49.9
Glyma.06G195700 Glycine max HOM05D004701 ORTHO05D005220 2.9e-198 696.0 709 48.8
FAN08G0610 Fragaria x ananassa HOM05D004701 ORTHO05D005220 3.7e-198 695.7 739 48.3
TPR.G11816 Trifolium pratense HOM05D004701 ORTHO05D005220 8.3e-198 694.5 707 49.8
Lsat_1_v5_gn_5_21460 Lactuca sativa HOM05D004701 ORTHO05D005220 1.6e-196 690.3 697 49.9
VMungo1309G2345 Vigna mungo HOM05D004701 ORTHO05D005220 7.6e-191 671.4 713 48.2
ATR0564G073 Amborella trichopoda HOM05D004701 ORTHO05D005220 1.7e-190 670.2 702 49.6
HanXRQChr05g0154901 Helianthus annuus HOM05D004701 ORTHO05D005220 1.7e-190 670.2 703 48.4
ECA246G0122 Erigeron canadensis HOM05D004701 ORTHO05D005220 2.4e-189 666.4 709 48.1
Phvul.009G185900 Phaseolus vulgaris HOM05D004701 ORTHO05D005220 1.2e-188 664.1 713 48.2
Migut.I00201 Erythranthe guttata HOM05D004701 ORTHO05D005220 1.6e-188 663.7 699 47.1
Lalb_Chr08g0235571 Lupinus albus HOM05D004701 ORTHO05D005220 1.7e-187 660.2 700 48.0
Sc12g0006470 Simmondsia chinensis HOM05D004701 ORTHO05D005220 2.5e-186 656.4 696 47.6
Rhsim08G0152800 Rhododendron simsii HOM05D004701 ORTHO05D005220 4.3e-186 655.6 682 50.1
CSS0010493 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 4.0e-184 649.0 700 49.7
SalBow5G2872 Salvia bowleyana HOM05D004701 ORTHO05D005220 6.8e-184 648.3 700 50.0
Haze_07305 Corylus avellana HOM05D004701 ORTHO05D005220 1.2e-183 647.5 857 44.3
PSO063G2323 Papaver somniferum HOM05D004701 ORTHO05D005220 3.4e-183 646.0 704 50.7
arahy.Tifrunner.gnm1.ann1.00I77L Arachis hypogaea HOM05D004701 ORTHO05D005220 5.8e-183 645.2 701 48.4
Hund02633 Selenicereus undatus HOM05D004701 ORTHO05D005220 3.8e-182 642.5 694 48.1
Solyc03g115840.4 Solanum lycopersicum HOM05D004701 ORTHO05D005220 1.2e-180 637.5 711 47.8
Psat5g195480 Pisum sativum HOM05D004701 ORTHO05D005220 3.5e-180 636.0 698 47.7
Peaxi162Scf00274g00452 Petunia axillaris HOM05D004701 ORTHO05D005220 1.3e-179 634.0 708 48.4
arahy.Tifrunner.gnm1.ann1.UQ68S4 Arachis hypogaea HOM05D004701 ORTHO05D005220 1.7e-179 633.6 701 49.1
CSS0005828 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 7.3e-178 628.2 707 47.9
FAN13G1597 Fragaria x ananassa HOM05D004701 ORTHO05D005220 8.1e-177 624.8 703 47.5
Lj4g0017943 Lotus japonicus HOM05D004701 ORTHO05D005220 3.1e-176 622.9 647 49.1
CAN.G479.72 Capsicum annuum HOM05D004701 ORTHO05D005220 2.9e-174 616.3 728 47.0
vmacro17562 Vaccinium macrocarpon HOM05D004701 ORTHO05D005220 4.9e-174 615.5 733 46.7
Nitab4.5_0001211g0300 Nicotiana tabacum HOM05D004701 ORTHO05D005220 2.7e-172 609.8 706 48.3
EL10Ac5g11047 Beta vulgaris HOM05D004701 ORTHO05D005220 1.3e-171 607.4 692 44.9
Nitab4.5_0005900g0110 Nicotiana tabacum HOM05D004701 ORTHO05D005220 1.1e-170 604.4 707 48.4
COL.COLO4_36922 Corchorus olitorius HOM05D004701 ORTHO05D005220 1.4e-165 587.4 649 48.5
Cc00_g08370 Coffea canephora HOM05D004701 ORTHO05D005220 1.6e-164 583.9 600 50.5
AUR62021651 Chenopodium quinoa HOM05D004701 ORTHO05D005220 4.2e-157 559.3 717 43.0
AUR62008439 Chenopodium quinoa HOM05D004701 ORTHO05D005220 1.1e-154 551.2 747 41.1
Os07g0632600 Oryza sativa ssp. japonica HOM05D004701 ORTHO05D005220 1.3e-153 547.7 700 42.3
Zm00001eb110080 Zea mays HOM05D004701 ORTHO05D005220 4.2e-149 532.7 690 41.4
Lj2g0020469 Lotus japonicus HOM05D004701 ORTHO05D005220 3.6e-132 476.5 648 40.0
CARHR019320 Cardamine hirsuta HOM05D004701 ORTHO05D005220 6.1e-132 475.7 264 86.4
ClCG06G016050 Citrullus lanatus HOM05D004701 ORTHO05D005220 1.8e-128 464.2 455 51.6
Lj5A108G55 Lonicera japonica HOM05D004701 ORTHO05D005220 7.0e-128 462.2 590 43.7
DCAR_010367 Daucus carota HOM05D004701 ORTHO05D005220 1.3e-126 458.0 690 39.1
Ah.11g048260 Amaranthus hybridus HOM05D004701 ORTHO05D005220 8.5e-126 455.3 558 43.5
Actinidia04876 Actinidia chinensis HOM05D004701 ORTHO05D005220 2.5e-125 453.8 378 55.6
CDE02G4120 Ceratophyllum demersum HOM05D004701 ORTHO05D005220 2.4e-120 437.2 454 49.1
TAR629G0729 Trochodendron aralioides HOM05D004701 ORTHO05D005220 3.1e-120 436.8 427 52.7
Mapoly0021s0150 Marchantia polymorpha HOM05D004701 ORTHO05D005220 4.7e-116 422.9 597 38.9
Sopen03g034820 Solanum pennellii HOM05D004701 ORTHO05D005220 3.7e-113 413.3 472 48.9
HPP92_019783 Vanilla planifolia HOM05D004701 ORTHO05D005220 7.7e-111 405.6 694 34.9
MBI02_g20482_MAGBIO Magnolia biondii HOM05D004701 ORTHO05D005220 1.4e-104 384.8 332 57.5
Pp3c17_15290 Physcomitrium patens HOM05D004701 ORTHO05D005220 1.8e-96 357.8 588 37.2
AagrBONN_evm.TU.Sc2ySwM_344.3797 Anthoceros agrestis HOM05D004701 ORTHO05D005220 1.5e-90 338.2 540 35.6
SMO117G0311 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 4.3e-77 293.5 348 42.5
MD14G1203500 Malus domestica HOM05D004701 ORTHO05D005220 4.0e-75 287.0 319 45.8
Cpa.g.sc341.2 Carica papaya HOM05D004701 ORTHO05D005220 1.5e-69 268.5 275 51.6
Ca_14652_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 5.3e-59 233.4 257 47.1
Oeu052445.1 Olea europaea HOM05D004701 ORTHO05D005220 2.4e-56 224.6 251 45.4
Actinidia04875 Actinidia chinensis HOM05D004701 ORTHO05D005220 3.2e-56 224.2 277 45.1
SMO286G0020 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.6e-52 211.8 312 38.1
Sopen03g034830 Solanum pennellii HOM05D004701 ORTHO05D005220 2.1e-52 211.5 219 48.4
MD14G1203400 Malus domestica HOM05D004701 ORTHO05D005220 1.4e-48 198.7 198 53.5
PGSC0003DMG400019522 Solanum tuberosum HOM05D004701 ORTHO05D005220 4.8e-44 183.7 291 44.3
Cc00_g08360 Coffea canephora HOM05D004701 ORTHO05D005220 9.7e-37 159.5 162 48.8
SMO274G0023 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 4.8e-36 157.1 328 31.7
HPP92_019730 Vanilla planifolia HOM05D004701 ORTHO05D005220 1.4e-35 155.6 516 28.1
SMO240G0047 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.2e-34 152.5 400 28.0
SMO274G0026 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.6e-34 151.4 327 31.5
CSS0033275 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 7.6e-34 149.8 212 42.9
Ca_14653_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 8.5e-33 146.4 233 35.6
SMO202G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 7.2e-32 143.3 185 41.1
Cpa.g.c36787.2 Carica papaya HOM05D004701 ORTHO05D005220 7.9e-31 139.8 87 71.3
SMO122G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 4.3e-29 134.0 240 35.8
SMO364G0054 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.8e-28 131.3 197 35.5
Cre02.g118450 Chlamydomonas reinhardtii HOM05D004701 ORTHO05D005220 1.4e-27 129.0 480 26.7
SMO183G0003 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.4e-27 128.3 330 31.2
SEGI_05265 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 2.4e-27 128.3 173 43.4
SEGI_06018 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 3.2e-24 117.9 143 39.2
SMO077G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 7.2e-24 116.7 240 32.5
SMO274G0004 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 7.9e-23 113.2 277 30.0
Hma1.2p1_0060F.1_g033570 Hydrangea macrophylla HOM05D004701 ORTHO05D005220 1.0e-22 112.8 160 42.5
PRCOL_00003726 Prasinoderma coloniale HOM05D004701 ORTHO05D005220 1.4e-22 112.5 439 25.1
MD14G1203300 Malus domestica HOM05D004701 ORTHO05D005220 1.5e-21 109.0 122 47.5
SMO274G0001 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.1e-19 102.8 158 41.1
AagrBONN_evm.TU.Sc2ySwM_344.2753 Anthoceros agrestis HOM05D004701 ORTHO05D005220 5.0e-17 94.0 418 24.4
SMO077G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 6.5e-17 93.6 257 28.8
SMO212G0008 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 6.5e-17 93.6 136 39.0
Oeu052446.1 Olea europaea HOM05D004701 ORTHO05D005220 6.7e-14 83.6 150 34.0
Cpa.g.sc3599.1 Carica papaya HOM05D004701 ORTHO05D005220 1.5e-13 82.4 62 66.1
Haze_06052 Corylus avellana HOM05D022078 ORTHO05D024871 2.2e-12 78.6 58 62.1
Lsat_1_v5_gn_3_76880 Lactuca sativa HOM05D005083 ORTHO05D006310 2.8e-12 78.2 102 44.1
MD14G1127800 Malus domestica HOM05D004701 ORTHO05D005220 2.8e-12 78.2 76 47.4
AagrBONN_evm.TU.Sc2ySwM_344.2754 Anthoceros agrestis HOM05D004701 ORTHO05D005220 3.7e-12 77.8 144 29.9
Oeu052444.1 Olea europaea HOM05D004701 ORTHO05D005220 3.7e-12 77.8 65 53.8
Lj5A108T60 Lonicera japonica HOM05D004701 ORTHO05D005220 2.4e-11 75.1 134 38.1
Ah.11g048280 Amaranthus hybridus HOM05D004701 ORTHO05D005220 7.0e-11 73.6 87 43.7
SMO032G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.6e-10 72.4 172 32.0
SGA_v2.0_scaffold313G48342 Striga asiatica HOM05D004701 ORTHO05D005220 2.6e-10 71.6 132 50.0
Haze_06050 Corylus avellana HOM05D022078 ORTHO05D024871 1.0e-09 69.7 58 58.6
MBI18_g07590_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D015058 1.7e-09 68.9 55 52.7
SMO286G0021 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.9e-08 65.5 173 28.9
MELO3C028766.2 Cucumis melo HOM05D001162 ORTHO05D022475 7.2e-08 63.5 46 56.5
CSS0009827 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.6e-07 62.4 72 50.0
CSS0027371 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 6.1e-07 60.5 41 61.0
CSS0048671 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.4e-06 59.3 72 43.1
CSS0018594 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.8e-06 58.9 41 58.5
CSS0034852 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 8.8e-06 56.6 72 41.7


User provided reference genes

Program Settings