Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p58620 Brassica napus HOM05D005689 ORTHO05D007060 1.5e-74 282.7 138 100.0
C08p41910 Brassica napus HOM05D005689 ORTHO05D007060 1.5e-74 282.7 138 100.0
BolC8t51754H Brassica oleracea HOM05D005689 ORTHO05D007060 1.5e-74 282.7 138 100.0
BraA09t41249Z Brassica rapa HOM05D005689 ORTHO05D007060 1.5e-74 282.7 138 100.0
BcaB08g34950 Brassica carinata HOM05D005689 ORTHO05D007060 6.3e-73 277.3 141 97.9
BcaC07g41181 Brassica carinata HOM05D005689 ORTHO05D007060 6.3e-73 277.3 141 97.9
AT2G20930 Arabidopsis thaliana HOM05D005689 ORTHO05D007060 1.5e-71 272.7 141 95.0
Carub.0004s0002 Capsella rubella HOM05D005689 ORTHO05D007060 1.5e-71 272.7 141 95.0
CARHR174210 Cardamine hirsuta HOM05D005689 ORTHO05D007060 3.4e-71 271.6 141 95.0
AL4G10060 Arabidopsis lyrata HOM05D005689 ORTHO05D007060 4.5e-71 271.2 141 94.3
Sp4g00120 Schrenkiella parvula HOM05D005689 ORTHO05D007060 5.9e-71 270.8 141 95.0
Thhalv10000369m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 7.9e-68 260.4 141 90.8
Thhalv10026520m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 1.8e-67 259.2 141 90.1
Aa31LG6G16620 Aethionema arabicum HOM05D005689 ORTHO05D007060 3.9e-67 258.1 141 87.9
Sp7g37220 Schrenkiella parvula HOM05D005689 ORTHO05D007060 6.7e-67 257.3 138 89.1
THA.LOC104824758 Tarenaya hassleriana HOM05D005689 ORTHO05D007060 6.7e-67 257.3 141 89.4
Aa31LG7G15690 Aethionema arabicum HOM05D005689 ORTHO05D007060 1.5e-66 256.1 169 78.1
BcaNung01978 Brassica carinata HOM05D005689 ORTHO05D007060 4.3e-66 254.6 141 87.2
CANSAT25G1424 Cannabis sativa HOM05D005689 ORTHO05D007060 9.7e-66 253.4 140 87.1
A06p48990 Brassica napus HOM05D005689 ORTHO05D007060 1.3e-65 253.1 141 86.5
BraA06t27765Z Brassica rapa HOM05D005689 ORTHO05D007060 1.3e-65 253.1 141 86.5
Potri.009G136800 Populus trichocarpa HOM05D005689 ORTHO05D007060 1.7e-65 252.7 140 87.1
Manes.04G071800 Manihot esculenta HOM05D005689 ORTHO05D007060 2.2e-65 252.3 140 86.4
Sc18g0006380 Simmondsia chinensis HOM05D005689 ORTHO05D007060 2.2e-65 252.3 139 87.8
Duzib132G1056 Durio zibethinus HOM05D005689 ORTHO05D007060 2.8e-65 251.9 140 87.1
Hund06443 Selenicereus undatus HOM05D005689 ORTHO05D007060 2.8e-65 251.9 139 87.8
C07p63680 Brassica napus HOM05D005689 ORTHO05D007060 3.7e-65 251.5 141 85.1
BolC7t46781H Brassica oleracea HOM05D005689 ORTHO05D007060 3.7e-65 251.5 141 85.1
CSS0016500 Camellia sinensis var. sinensis HOM05D005689 ORTHO05D007060 3.7e-65 251.5 140 86.4
Gohir.A03G205500 Gossypium hirsutum HOM05D005689 ORTHO05D007060 4.8e-65 251.1 140 87.1
Gohir.D02G226800 Gossypium hirsutum HOM05D005689 ORTHO05D007060 4.8e-65 251.1 140 87.1
Gorai.005G254700 Gossypium raimondii HOM05D005689 ORTHO05D007060 4.8e-65 251.1 140 87.1
Actinidia20518 Actinidia chinensis HOM05D005689 ORTHO05D007060 6.3e-65 250.8 140 86.4
BcaC07g41184 Brassica carinata HOM05D005689 ORTHO05D007060 6.3e-65 250.8 138 91.3
Dinv41928 Davidia involucrata HOM05D005689 ORTHO05D007060 6.3e-65 250.8 140 86.4
Peaxi162Scf00362g00537 Petunia axillaris HOM05D005689 ORTHO05D007060 8.2e-65 250.4 140 86.4
PGSC0003DMG400006181 Solanum tuberosum HOM05D005689 ORTHO05D007060 1.1e-64 250.0 140 86.4
EL10Ac9g21356 Beta vulgaris HOM05D005689 ORTHO05D007060 1.4e-64 249.6 139 87.1
MSTRG.19983 Avicennia marina HOM05D005689 ORTHO05D007060 1.8e-64 249.2 140 85.7
CiPaw.05G083600 Carya illinoinensis HOM05D005689 ORTHO05D007060 1.8e-64 249.2 140 86.4
Nitab4.5_0003698g0100 Nicotiana tabacum HOM05D005689 ORTHO05D007060 1.8e-64 249.2 140 86.4
Solyc01g111690.3 Solanum lycopersicum HOM05D005689 ORTHO05D007060 1.8e-64 249.2 140 86.4
Sopen01g053730 Solanum pennellii HOM05D005689 ORTHO05D007060 1.8e-64 249.2 140 86.4
vmacro02282 Vaccinium macrocarpon HOM05D005689 ORTHO05D007060 1.8e-64 249.2 140 85.7
GSVIVG01024004001 Vitis vinifera HOM05D005689 ORTHO05D007060 1.8e-64 249.2 140 85.7
QL11p051049 Quercus lobata HOM05D005689 ORTHO05D007060 2.4e-64 248.8 138 87.0
TWI31G0315 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 2.4e-64 248.8 140 85.7
Aqoxy6G02106 Aquilegia oxysepala HOM05D005689 ORTHO05D007060 3.1e-64 248.4 140 85.0
Ciclev10029529m.g Citrus clementina HOM05D005689 ORTHO05D007060 3.1e-64 248.4 140 85.0
Duzib248G0128 Durio zibethinus HOM05D005689 ORTHO05D007060 3.1e-64 248.4 140 85.7
Thecc.02G057800 Theobroma cacao HOM05D005689 ORTHO05D007060 3.1e-64 248.4 140 85.7
Cpa.g.sc20.100 Carica papaya HOM05D005689 ORTHO05D007060 4.1e-64 248.1 140 85.0
CAN.G588.89 Capsicum annuum HOM05D005689 ORTHO05D007060 5.3e-64 247.7 140 85.7
Cfa005260 Carpinus fangiana HOM05D005689 ORTHO05D007060 5.3e-64 247.7 140 85.0
AUR62013016 Chenopodium quinoa HOM05D005689 ORTHO05D007060 5.3e-64 247.7 139 86.3
Cc09_g09830 Coffea canephora HOM05D005689 ORTHO05D007060 5.3e-64 247.7 140 85.0
Atru.chr5.3380 Acer truncatum HOM05D005689 ORTHO05D007060 6.9e-64 247.3 140 85.0
Actinidia00628 Actinidia chinensis HOM05D005689 ORTHO05D007060 6.9e-64 247.3 140 85.0
Prupe.8G167200 Prunus persica HOM05D005689 ORTHO05D007060 9.1e-64 246.9 140 84.3
CiPaw.06G120900 Carya illinoinensis HOM05D005689 ORTHO05D007060 1.5e-63 246.1 140 85.0
Eucgr.I01435 Eucalyptus grandis HOM05D005689 ORTHO05D007060 1.5e-63 246.1 140 83.6
MD05G1123300 Malus domestica HOM05D005689 ORTHO05D007060 1.5e-63 246.1 140 83.6
AUR62010026 Chenopodium quinoa HOM05D005689 ORTHO05D007060 2.0e-63 245.7 139 86.3
PGR142G2796 Punica granatum HOM05D005689 ORTHO05D007060 2.0e-63 245.7 140 84.3
Migut.B00070 Erythranthe guttata HOM05D005689 ORTHO05D007060 2.6e-63 245.4 140 83.6
Glyma.18G247400 Glycine max HOM05D005689 ORTHO05D007060 2.6e-63 245.4 140 84.3
MD10G1126300 Malus domestica HOM05D005689 ORTHO05D007060 3.4e-63 245.0 140 82.9
ClCG02G003990 Citrullus lanatus HOM05D005689 ORTHO05D007060 4.5e-63 244.6 140 82.9
MELO3C013345.2 Cucumis melo HOM05D005689 ORTHO05D007060 4.5e-63 244.6 140 82.9
CsaV3_7G001110 Cucumis sativus L. HOM05D005689 ORTHO05D007060 4.5e-63 244.6 140 82.9
Sed0024195 Sechium edule HOM05D005689 ORTHO05D007060 4.5e-63 244.6 140 82.9
Glyma.09G245600 Glycine max HOM05D005689 ORTHO05D007060 5.9e-63 244.2 140 83.6
Lj1g0014054 Lotus japonicus HOM05D005689 ORTHO05D007060 5.9e-63 244.2 140 83.6
RcHm_v2.0_Chr6g0278501 Rosa chinensis HOM05D005689 ORTHO05D007060 7.7e-63 243.8 140 82.9
FAN24G0830 Fragaria x ananassa HOM05D005689 ORTHO05D007060 1.0e-62 243.4 140 82.1
TWI75G0361 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 1.0e-62 243.4 140 83.6
FvH4_2g15500 Fragaria vesca HOM05D005689 ORTHO05D007060 1.3e-62 243.0 140 82.1
FAN15G3340 Fragaria x ananassa HOM05D005689 ORTHO05D007060 1.3e-62 243.0 140 82.1
Medtr7g081040 Medicago truncatula HOM05D005689 ORTHO05D007060 1.3e-62 243.0 140 82.9
unitig_0.g36 Utricularia gibba HOM05D005689 ORTHO05D007060 1.3e-62 243.0 140 82.9
Ca_08042_v3 Cicer arietinum L. HOM05D005689 ORTHO05D007060 1.7e-62 242.7 140 82.9
TPR.G32114 Trifolium pratense HOM05D005689 ORTHO05D007060 1.7e-62 242.7 140 82.9
VMungo1383G2472 Vigna mungo HOM05D005689 ORTHO05D007060 1.7e-62 242.7 140 82.9
Phvul.008G049900 Phaseolus vulgaris HOM05D005689 ORTHO05D007060 2.2e-62 242.3 140 82.9
FAN27G1498 Fragaria x ananassa HOM05D005689 ORTHO05D007060 2.9e-62 241.9 140 81.4
Hma1.2p1_0032F.1_g019300 Hydrangea macrophylla HOM05D005689 ORTHO05D007060 3.8e-62 241.5 140 82.9
FAN20G0310 Fragaria x ananassa HOM05D005689 ORTHO05D007060 6.5e-62 240.7 140 81.4
Lsat_1_v5_gn_8_123161 Lactuca sativa HOM05D005689 ORTHO05D007060 6.5e-62 240.7 140 81.4
Lalb_Chr21g0306961 Lupinus albus HOM05D005689 ORTHO05D007060 6.5e-62 240.7 140 81.4
PSO541G0653 Papaver somniferum HOM05D005689 ORTHO05D007060 6.5e-62 240.7 139 84.2
HanXRQChr03g0080211 Helianthus annuus HOM05D005689 ORTHO05D007060 8.5e-62 240.4 136 83.8
TAR376G1105 Trochodendron aralioides HOM05D005689 ORTHO05D007060 1.1e-61 240.0 138 84.1
ECA233G5373 Erigeron canadensis HOM05D005689 ORTHO05D007060 1.4e-61 239.6 136 83.8
PSO675G8512 Papaver somniferum HOM05D005689 ORTHO05D007060 1.4e-61 239.6 139 83.5
MBI12_g17551_MAGBIO Magnolia biondii HOM05D005689 ORTHO05D007060 3.2e-61 238.4 140 80.7
Nitab4.5_0000283g0450 Nicotiana tabacum HOM05D005689 ORTHO05D007060 3.2e-61 238.4 150 80.0
Os09g0541500 Oryza sativa ssp. japonica HOM05D005689 ORTHO05D007060 5.5e-61 237.7 138 83.3
Zm00001eb331790 Zea mays HOM05D005689 ORTHO05D007060 7.2e-61 237.3 138 82.6
SalBow5G2226 Salvia bowleyana HOM05D005689 ORTHO05D007060 2.1e-60 235.7 163 73.0
DCAR_003179 Daucus carota HOM05D005689 ORTHO05D007060 3.6e-60 235.0 138 82.6
DCAR_030423 Daucus carota HOM05D005689 ORTHO05D007060 4.7e-60 234.6 138 83.3
CDE02G0259 Ceratophyllum demersum HOM05D005689 ORTHO05D007060 7.9e-60 233.8 138 80.4
Oeu019918.2 Olea europaea HOM05D005689 ORTHO05D007060 1.4e-59 233.0 166 70.5
Psat3g100360 Pisum sativum HOM05D005689 ORTHO05D007060 3.9e-59 231.5 128 85.9
SalBow1G8746 Salvia bowleyana HOM05D005689 ORTHO05D007060 1.1e-58 229.9 139 79.9
HPP92_012947 Vanilla planifolia HOM05D005689 ORTHO05D007060 2.6e-58 228.8 138 79.0
SEGI_29883 Sequoiadendron giganteum HOM05D005689 ORTHO05D007060 1.1e-56 223.4 138 76.8
Sabra09G0106300 Salix brachista HOM05D005689 ORTHO05D007060 1.8e-56 222.6 204 59.3
CARHR111830 Cardamine hirsuta HOM05D005689 ORTHO05D007060 3.5e-55 218.4 114 93.9
Mapoly0010s0009 Marchantia polymorpha HOM05D005689 ORTHO05D007060 5.9e-55 217.6 138 73.9
SalBow5G0288 Salvia bowleyana HOM05D005689 ORTHO05D007060 1.3e-54 216.5 152 72.4
arahy.Tifrunner.gnm1.ann1.9U6RFS Arachis hypogaea HOM05D005689 ORTHO05D007060 2.2e-54 215.7 200 58.5
Pp3c13_19460 Physcomitrium patens HOM05D005689 ORTHO05D007060 2.7e-52 208.8 138 69.6
Sed0010745 Sechium edule HOM05D005689 ORTHO05D007060 4.7e-52 208.0 140 72.1
ATR0315G041 Amborella trichopoda HOM05D005689 ORTHO05D007060 1.0e-51 206.8 135 73.3
HPP92_007243 Vanilla planifolia HOM05D005689 ORTHO05D007060 9.7e-50 200.3 122 78.7
Pp3c12_10830 Physcomitrium patens HOM05D005689 ORTHO05D007060 1.3e-49 199.9 138 67.4
SGA_v2.0_scaffold80G25838 Striga asiatica HOM05D005689 ORTHO05D007060 1.3e-46 189.9 160 63.8
CBR_g33926 Chara braunii HOM05D000604 ORTHO05D004856 2.2e-46 189.1 133 65.4
SMO228G0084 Selaginella moellendorffii HOM05D005689 ORTHO05D007060 4.2e-45 184.9 138 59.4
Nitab4.5_0000079g0270 Nicotiana tabacum HOM05D005689 ORTHO05D007060 5.7e-42 174.5 100 83.0
Nn6g31939 Nelumbo nucifera HOM05D005689 ORTHO05D007060 2.8e-41 172.2 97 84.5
arahy.Tifrunner.gnm1.ann1.B1HGXN Arachis hypogaea HOM05D005689 ORTHO05D007060 8.3e-41 170.6 99 82.8
Potri.004G176500 Populus trichocarpa HOM05D005689 ORTHO05D007060 1.6e-36 156.4 113 69.9
Rhsim11G0192800 Rhododendron simsii HOM05D005689 ORTHO05D007060 3.6e-28 128.6 70 87.1
Cre03.g165650 Chlamydomonas reinhardtii HOM05D005689 ORTHO05D007060 1.4e-27 126.7 138 47.8
AUR62017814 Chenopodium quinoa HOM05D005689 ORTHO05D007060 5.2e-27 124.8 69 88.4
AUR62003497 Chenopodium quinoa HOM05D005689 ORTHO05D007060 6.8e-27 124.4 69 85.5
Oeu028973.1 Olea europaea HOM05D005689 ORTHO05D007060 1.3e-25 120.2 70 80.0
RcHm_v2.0_Chr4g0392001 Rosa chinensis HOM05D005689 ORTHO05D007060 7.8e-23 110.9 140 47.9
Ah.01g023120 Amaranthus hybridus HOM05D005689 ORTHO05D007060 5.4e-16 88.2 43 88.4
SGA_v2.0_scaffold199G41205 Striga asiatica HOM05D005689 ORTHO05D007060 3.6e-12 75.5 53 69.8
Cfa022471 Carpinus fangiana HOM05D000441 ORTHO05D124224 6.2e-12 74.7 157 32.5
HanXRQChr05g0150591 Helianthus annuus HOM05D005689 ORTHO05D007060 7.5e-10 67.8 44 68.2
MCO02G011 Micromonas commoda HOM05D005689 ORTHO05D007060 1.3e-09 67.0 163 28.8
PRCOL_00005825 Prasinoderma coloniale HOM05D005689 ORTHO05D007060 1.3e-09 67.0 117 33.3
C03p66780 Brassica napus HOM05D046457 ORTHO05D032727 2.1e-07 59.7 80 42.5
SGA_v2.0_scaffold11G05770 Striga asiatica HOM05D005689 ORTHO05D004382 2.7e-07 59.3 36 69.4


User provided reference genes

Program Settings