Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p41600 Brassica napus HOM05D007030 ORTHO05D009159 1.9e-281 971.8 485 100.0
BcaNung06382 Brassica carinata HOM05D007030 ORTHO05D009159 6.7e-279 963.4 483 99.6
BolC8t51722H Brassica oleracea HOM05D007030 ORTHO05D009159 3.1e-276 954.5 488 98.4
BraA09t41218Z Brassica rapa HOM05D007030 ORTHO05D009159 1.3e-266 922.5 485 95.5
BcaNung06994 Brassica carinata HOM05D007030 ORTHO05D009159 1.1e-265 919.5 485 94.8
Thhalv10000118m.g Eutrema salsugineum HOM05D007030 ORTHO05D009159 2.8e-253 878.2 485 90.9
Sp4g00540 Schrenkiella parvula HOM05D007030 ORTHO05D009159 9.1e-252 873.2 490 90.0
AL4G10540 Arabidopsis lyrata HOM05D007030 ORTHO05D009159 3.8e-242 841.3 484 88.0
THA.LOC104824797 Tarenaya hassleriana HOM05D007030 ORTHO05D009159 6.3e-221 770.8 476 80.5
CARHR112250 Cardamine hirsuta HOM05D007030 ORTHO05D009159 7.8e-211 737.3 385 94.0
AT2G21370 Arabidopsis thaliana HOM05D007030 ORTHO05D009159 2.3e-207 725.7 386 92.0
Carub.0004s0040 Capsella rubella HOM05D007030 ORTHO05D009159 8.6e-202 707.2 390 89.2
BcaNung06381 Brassica carinata HOM05D007030 ORTHO05D009159 1.2e-200 703.4 359 97.5
Potri.009G122300 Populus trichocarpa HOM05D007030 ORTHO05D009159 2.1e-200 702.6 474 72.8
Manes.04G085100 Manihot esculenta HOM05D007030 ORTHO05D009159 5.2e-199 698.0 424 77.8
MD10G1065800 Malus domestica HOM05D007030 ORTHO05D009159 6.8e-199 697.6 425 77.9
FAN20G0390 Fragaria x ananassa HOM05D007030 ORTHO05D009159 1.7e-197 693.0 445 75.7
Gohir.D13G029100 Gossypium hirsutum HOM05D007030 ORTHO05D009159 2.2e-197 692.6 476 71.6
Ciclev10028302m.g Citrus clementina HOM05D007030 ORTHO05D009159 4.9e-197 691.4 479 71.0
FAN15G3154 Fragaria x ananassa HOM05D007030 ORTHO05D009159 1.4e-196 689.9 445 75.1
RcHm_v2.0_Chr6g0267041 Rosa chinensis HOM05D007030 ORTHO05D009159 2.4e-196 689.1 458 73.6
PGR142G2744 Punica granatum HOM05D007030 ORTHO05D009159 7.1e-196 687.6 477 70.6
GSVIVG01024202001 Vitis vinifera HOM05D007030 ORTHO05D009159 7.1e-196 687.6 473 71.0
Prupe.8G087700 Prunus persica HOM05D007030 ORTHO05D009159 9.2e-196 687.2 423 77.3
FAN24G1057 Fragaria x ananassa HOM05D007030 ORTHO05D009159 2.1e-195 686.0 458 73.1
ECA246G1002 Erigeron canadensis HOM05D007030 ORTHO05D009159 3.5e-195 685.3 420 77.1
Eucgr.I01312 Eucalyptus grandis HOM05D007030 ORTHO05D009159 6.0e-195 684.5 419 77.1
Nn6g32211 Nelumbo nucifera HOM05D007030 ORTHO05D009159 6.0e-195 684.5 477 69.6
Oeu008578.1 Olea europaea HOM05D007030 ORTHO05D009159 5.1e-194 681.4 422 75.6
TWI31G0693 Tripterygium wilfordii HOM05D007030 ORTHO05D009159 8.6e-194 680.6 477 70.9
HanXRQChr15g0479121 Helianthus annuus HOM05D007030 ORTHO05D009159 3.3e-193 678.7 463 71.7
Cpa.g.sc150.40 Carica papaya HOM05D007030 ORTHO05D009159 4.3e-193 678.3 444 72.5
Nitab4.5_0003006g0030 Nicotiana tabacum HOM05D007030 ORTHO05D009159 4.3e-193 678.3 454 72.0
Lj5A191G48 Lonicera japonica HOM05D007030 ORTHO05D009159 1.2e-192 676.8 460 70.9
Dinv23472 Davidia involucrata HOM05D007030 ORTHO05D009159 2.8e-192 675.6 470 70.2
Migut.B00189 Erythranthe guttata HOM05D007030 ORTHO05D009159 2.8e-192 675.6 457 71.6
vmacro02066 Vaccinium macrocarpon HOM05D007030 ORTHO05D009159 3.6e-192 675.2 421 74.8
PGSC0003DMG400009584 Solanum tuberosum HOM05D007030 ORTHO05D009159 4.7e-192 674.9 420 75.5
Gorai.013G033100 Gossypium raimondii HOM05D007030 ORTHO05D009159 1.1e-191 673.7 518 65.6
Sopen11g019320 Solanum pennellii HOM05D007030 ORTHO05D009159 1.1e-191 673.7 420 75.7
Rhsim11G0182100 Rhododendron simsii HOM05D007030 ORTHO05D009159 2.3e-191 672.5 428 74.1
CSS0044633 Camellia sinensis var. sinensis HOM05D007030 ORTHO05D009159 1.5e-190 669.8 421 75.3
CiPaw.05G072000 Carya illinoinensis HOM05D007030 ORTHO05D009159 3.4e-190 668.7 457 70.2
Nitab4.5_0001413g0070 Nicotiana tabacum HOM05D007030 ORTHO05D009159 4.4e-190 668.3 420 75.2
MBI05_g05431_MAGBIO Magnolia biondii HOM05D007030 ORTHO05D009159 7.6e-190 667.5 441 72.3
QL11p045675 Quercus lobata HOM05D007030 ORTHO05D009159 9.9e-190 667.2 444 73.2
Gohir.A13G031100 Gossypium hirsutum HOM05D007030 ORTHO05D009159 1.3e-189 666.8 474 70.7
CsaV3_2G015180 Cucumis sativus L. HOM05D007030 ORTHO05D009159 4.9e-189 664.8 448 72.5
Aqoxy5G01506 Aquilegia oxysepala HOM05D007030 ORTHO05D009159 6.4e-189 664.5 422 74.6
Hund06268 Selenicereus undatus HOM05D007030 ORTHO05D009159 8.4e-189 664.1 454 69.6
CANSAT11G0427 Cannabis sativa HOM05D007030 ORTHO05D009159 1.1e-188 663.7 433 73.9
Lj3g0022597 Lotus japonicus HOM05D007030 ORTHO05D009159 1.1e-188 663.7 419 75.7
Cc02_g17050 Coffea canephora HOM05D007030 ORTHO05D009159 4.1e-188 661.8 423 74.0
Lalb_Chr01g0002251 Lupinus albus HOM05D007030 ORTHO05D009159 7.1e-188 661.0 419 75.4
TAR381G1513 Trochodendron aralioides HOM05D007030 ORTHO05D009159 1.2e-187 660.2 431 72.2
Haze_02305 Corylus avellana HOM05D007030 ORTHO05D009159 1.6e-187 659.8 482 67.2
SalBow6G2462 Salvia bowleyana HOM05D007030 ORTHO05D009159 2.7e-187 659.1 472 68.4
Glyma.11G112600 Glycine max HOM05D007030 ORTHO05D009159 6.6e-186 654.4 424 73.3
Phvul.011G040600 Phaseolus vulgaris HOM05D007030 ORTHO05D009159 6.6e-186 654.4 423 73.8
AUR62010413 Chenopodium quinoa HOM05D007030 ORTHO05D009159 1.1e-185 653.7 432 71.5
DCAR_022800 Daucus carota HOM05D007030 ORTHO05D009159 1.9e-185 652.9 421 72.7
CAN.G341.5 Capsicum annuum HOM05D007030 ORTHO05D009159 3.3e-185 652.1 481 66.5
Medtr4g071230 Medicago truncatula HOM05D007030 ORTHO05D009159 2.1e-184 649.4 456 68.9
arahy.Tifrunner.gnm1.ann1.X71KKA Arachis hypogaea HOM05D007030 ORTHO05D009159 3.6e-184 648.7 422 73.2
EL10Ac9g21613 Beta vulgaris HOM05D007030 ORTHO05D009159 6.9e-183 644.4 477 65.6
Lsat_1_v5_gn_3_43860 Lactuca sativa HOM05D007030 ORTHO05D009159 1.6e-179 633.3 444 70.5
Aa31LG7G15160 Aethionema arabicum HOM05D007030 ORTHO05D009159 4.6e-179 631.7 355 86.5
COL.COLO4_26024 Corchorus olitorius HOM05D007030 ORTHO05D009159 1.3e-178 630.2 564 58.9
FvH4_2g10090 Fragaria vesca HOM05D007030 ORTHO05D009159 1.3e-176 623.6 382 77.7
Ca_20921_v3 Cicer arietinum L. HOM05D007030 ORTHO05D009159 3.4e-174 615.5 424 70.0
MELO3C023343.2 Cucumis melo HOM05D007030 ORTHO05D009159 3.8e-173 612.1 382 76.4
SGA_v2.0_scaffold58G20475 Striga asiatica HOM05D007030 ORTHO05D009159 4.9e-173 611.7 420 69.3
arahy.Tifrunner.gnm1.ann1.EU2PQ7 Arachis hypogaea HOM05D007030 ORTHO05D009159 4.2e-172 608.6 437 68.6
Sed0020159 Sechium edule HOM05D007030 ORTHO05D009159 4.2e-172 608.6 383 76.0
Thecc.02G077800 Theobroma cacao HOM05D007030 ORTHO05D009159 1.2e-171 607.1 380 76.8
ClCG11G003990 Citrullus lanatus HOM05D007030 ORTHO05D009159 1.6e-171 606.7 494 64.0
Actinidia11760 Actinidia chinensis HOM05D007030 ORTHO05D009159 2.1e-171 606.3 473 64.9
PSO210G4381 Papaver somniferum HOM05D007030 ORTHO05D009159 3.4e-166 589.0 469 63.3
Hma1.2p1_0851F.1_g228290 Hydrangea macrophylla HOM05D007030 ORTHO05D009159 4.9e-165 585.1 421 68.6
ATR0661G201 Amborella trichopoda HOM05D007030 ORTHO05D009159 4.8e-160 568.5 420 66.4
AUR62016803 Chenopodium quinoa HOM05D007030 ORTHO05D009159 1.1e-159 567.4 428 65.9
TPR.G16229 Trifolium pratense HOM05D007030 ORTHO05D009159 1.4e-159 567.0 385 70.6
Atru.chr5.3113 Acer truncatum HOM05D007030 ORTHO05D009159 9.0e-159 564.3 337 79.2
Psat7g182480 Pisum sativum HOM05D007030 ORTHO05D009159 1.0e-157 560.8 398 69.1
SMO115G0266 Selaginella moellendorffii HOM05D007030 ORTHO05D009159 1.0e-157 560.8 440 62.0
Zm00001eb094750 Zea mays HOM05D007030 ORTHO05D009159 2.2e-152 543.1 421 64.8
Mapoly0010s0072 Marchantia polymorpha HOM05D007030 ORTHO05D009159 1.8e-151 540.0 421 62.7
VMungo1127G1504 Vigna mungo HOM05D007030 ORTHO05D009159 2.4e-151 539.7 424 63.9
Duzib052G0475 Durio zibethinus HOM05D007030 ORTHO05D009159 2.2e-149 533.1 481 58.6
Sc14g0001940 Simmondsia chinensis HOM05D007030 ORTHO05D009159 7.4e-145 518.1 313 78.0
unitig_744.g24262 Utricularia gibba HOM05D007030 ORTHO05D009159 2.0e-137 493.4 428 58.4
CDE09G0328 Ceratophyllum demersum HOM05D007030 ORTHO05D009159 4.5e-126 455.7 482 50.8
Cre02.g098150 Chlamydomonas reinhardtii HOM05D007030 ORTHO05D009159 1.3e-117 427.6 463 49.0
Peaxi162Scf00684g00133 Petunia axillaris HOM05D007030 ORTHO05D009159 7.2e-108 395.2 242 74.8
Os07g0409200 Oryza sativa ssp. japonica HOM05D007030 ORTHO05D009159 2.8e-107 393.3 252 73.4
MCO15G291 Micromonas commoda HOM05D007030 ORTHO05D009159 8.9e-98 361.7 438 46.3
Solyc11g042950.1 Solanum lycopersicum HOM05D007030 ORTHO05D009159 4.6e-86 322.8 202 72.8
AagrBONN_evm.TU.Sc2ySwM_117.2558 Anthoceros agrestis HOM05D007030 ORTHO05D009159 7.8e-86 322.0 283 57.6
Haze_02254 Corylus avellana HOM05D007030 ORTHO05D009159 1.0e-85 321.6 326 52.8
Haze_02264 Corylus avellana HOM05D007030 ORTHO05D009159 3.9e-85 319.7 326 52.8
RcHm_v2.0_Chr4g0423361 Rosa chinensis HOM05D007030 ORTHO05D009159 1.3e-77 294.7 224 67.0
THA.LOC104804536 Tarenaya hassleriana HOM05D007030 ORTHO05D009159 3.1e-74 283.5 179 77.7
Haze_02269 Corylus avellana HOM05D007030 ORTHO05D009159 3.9e-69 266.5 210 63.3
PRCOL_00006836 Prasinoderma coloniale HOM05D007030 ORTHO05D009159 8.1e-59 232.3 449 36.7
RcHm_v2.0_Chr3g0496591 Rosa chinensis HOM05D007030 ORTHO05D009159 9.0e-58 228.8 302 47.0
TPR.G30522 Trifolium pratense HOM05D007030 ORTHO05D000007 1.1e-52 211.8 164 63.4
THA.LOC104804117 Tarenaya hassleriana HOM05D007030 ORTHO05D009159 2.3e-45 187.6 115 78.3
arahy.Tifrunner.gnm1.ann1.L6T79S Arachis hypogaea HOM05D007030 ORTHO05D009159 9.7e-36 155.6 93 76.3
PGSC0003DMG400009674 Solanum tuberosum HOM05D007030 ORTHO05D028676 4.2e-31 140.2 89 77.5
Glyma.12G038500 Glycine max HOM05D007030 ORTHO05D028676 7.4e-28 129.4 88 69.3
Aa31LG7G15150 Aethionema arabicum HOM05D007030 ORTHO05D009159 1.5e-20 105.1 100 60.0
CDE09G1160 Ceratophyllum demersum HOM05D007030 ORTHO05D028676 9.4e-15 85.9 58 67.2
QL11p045724 Quercus lobata HOM05D007030 ORTHO05D028676 4.5e-09 67.0 43 74.4
AagrBONN_evm.TU.Sc2ySwM_228.1076 Anthoceros agrestis HOM05D001656 ORTHO05D005043 5.5e-07 60.1 244 23.8


User provided reference genes

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