Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p41580 Brassica napus HOM05D005703 ORTHO05D006643 4.7e-183 644.4 332 100.0
BolC8t51720H Brassica oleracea HOM05D005703 ORTHO05D006643 9.2e-179 630.2 333 98.2
A09p58290 Brassica napus HOM05D005703 ORTHO05D006643 6.8e-174 614.0 333 95.8
BraA09t41216Z Brassica rapa HOM05D005703 ORTHO05D006643 8.3e-172 607.1 334 95.2
Sp4g00560 Schrenkiella parvula HOM05D005703 ORTHO05D006643 7.3e-160 567.4 332 89.2
Carub.0004s0043 Capsella rubella HOM05D005703 ORTHO05D006643 3.7e-156 555.1 332 85.8
CARHR112270 Cardamine hirsuta HOM05D005703 ORTHO05D006643 1.4e-155 553.1 332 86.7
AL4G10560 Arabidopsis lyrata HOM05D005703 ORTHO05D006643 4.1e-155 551.6 332 84.6
AT2G21385 Arabidopsis thaliana HOM05D005703 ORTHO05D006643 2.8e-151 538.9 333 83.8
Aa31LG7G15130 Aethionema arabicum HOM05D005703 ORTHO05D001153 6.0e-146 521.2 332 81.9
THA.LOC104824803 Tarenaya hassleriana HOM05D005703 ORTHO05D006643 4.9e-132 474.9 332 75.9
Thhalv10000241m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 2.2e-124 449.5 252 90.1
Cpa.g.sc150.43 Carica papaya HOM05D005703 ORTHO05D006643 9.6e-120 434.1 341 67.4
QL11p045612 Quercus lobata HOM05D005703 ORTHO05D006643 6.5e-116 421.4 332 68.1
Potri.004G160800 Populus trichocarpa HOM05D005703 ORTHO05D006643 8.4e-116 421.0 280 75.0
Thecc.02G078100 Theobroma cacao HOM05D005703 ORTHO05D006643 1.4e-115 420.2 280 74.6
Atru.chr5.3109 Acer truncatum HOM05D005703 ORTHO05D006643 2.5e-115 419.5 310 69.4
Manes.11G087800 Manihot esculenta HOM05D005703 ORTHO05D006643 2.5e-115 419.5 280 75.7
Eucgr.D00178 Eucalyptus grandis HOM05D005703 ORTHO05D006643 4.6e-114 415.2 280 74.6
TWI31G0330 Tripterygium wilfordii HOM05D005703 ORTHO05D006643 2.3e-113 412.9 315 67.3
Peaxi162Scf00016g00231 Petunia axillaris HOM05D005703 ORTHO05D006643 3.3e-112 409.1 295 70.8
Sopen01g052320 Solanum pennellii HOM05D005703 ORTHO05D006643 3.3e-112 409.1 330 65.8
MD10G1066100 Malus domestica HOM05D005703 ORTHO05D006643 7.4e-112 407.9 325 66.5
RcHm_v2.0_Chr6g0266981 Rosa chinensis HOM05D005703 ORTHO05D006643 7.4e-112 407.9 283 71.7
Gohir.D12G030600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 9.7e-112 407.5 316 68.4
GSVIVG01024205001 Vitis vinifera HOM05D005703 ORTHO05D006643 9.7e-112 407.5 280 73.6
Sabra04G0107600 Salix brachista HOM05D005703 ORTHO05D006643 1.6e-111 406.8 278 73.7
Solyc01g110160.4 Solanum lycopersicum HOM05D005703 ORTHO05D006643 1.6e-111 406.8 330 65.5
PGSC0003DMG400030971 Solanum tuberosum HOM05D005703 ORTHO05D006643 1.6e-111 406.8 330 65.2
MELO3C002791.2 Cucumis melo HOM05D005703 ORTHO05D006643 6.3e-111 404.8 293 71.3
FvH4_2g10050 Fragaria vesca HOM05D005703 ORTHO05D006643 8.2e-111 404.4 300 68.7
Gorai.008G031500 Gossypium raimondii HOM05D005703 ORTHO05D006643 8.2e-111 404.4 280 73.6
Hma1.2p1_0066F.1_g035910 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 8.2e-111 404.4 282 71.6
CiPaw.06G130900 Carya illinoinensis HOM05D005703 ORTHO05D006643 1.1e-110 404.1 323 65.6
Lj3g0017018 Lotus japonicus HOM05D005703 ORTHO05D006643 1.1e-110 404.1 286 69.9
COL.COLO4_26014 Corchorus olitorius HOM05D005703 ORTHO05D006643 1.8e-110 403.3 280 72.9
CsaV3_7G000370 Cucumis sativus L. HOM05D005703 ORTHO05D006643 1.8e-110 403.3 293 71.0
HanXRQChr12g0373591 Helianthus annuus HOM05D005703 ORTHO05D006643 2.4e-110 402.9 330 66.4
CSS0001334 Camellia sinensis var. sinensis HOM05D005703 ORTHO05D006643 3.1e-110 402.5 317 66.2
Ciclev10028680m.g Citrus clementina HOM05D005703 ORTHO05D006643 5.3e-110 401.7 324 64.8
Glyma.11G112900 Glycine max HOM05D005703 ORTHO05D006643 6.9e-110 401.4 280 71.1
Actinidia02238 Actinidia chinensis HOM05D005703 ORTHO05D006643 2.6e-109 399.4 290 70.0
ECA234G1754 Erigeron canadensis HOM05D005703 ORTHO05D006643 3.4e-109 399.1 287 73.9
Lalb_Chr03g0025421 Lupinus albus HOM05D005703 ORTHO05D006643 7.6e-109 397.9 280 71.4
Actinidia27862 Actinidia chinensis HOM05D005703 ORTHO05D006643 1.0e-108 397.5 288 69.8
arahy.Tifrunner.gnm1.ann1.YBLQ63 Arachis hypogaea HOM05D005703 ORTHO05D006643 2.9e-108 396.0 296 66.6
PSO170G4951 Papaver somniferum HOM05D005703 ORTHO05D006643 2.9e-108 396.0 316 64.9
Aqoxy5G01507 Aquilegia oxysepala HOM05D005703 ORTHO05D006643 1.1e-107 394.0 331 63.1
Ca_20918_v3 Cicer arietinum L. HOM05D005703 ORTHO05D006643 1.1e-107 394.0 283 70.7
Medtr4g071190 Medicago truncatula HOM05D005703 ORTHO05D006643 1.4e-107 393.7 280 71.4
Rhsim05G0069500 Rhododendron simsii HOM05D005703 ORTHO05D006643 1.9e-107 393.3 286 67.1
Glyma.12G038800 Glycine max HOM05D005703 ORTHO05D006643 5.5e-107 391.7 280 69.3
TPR.G16235 Trifolium pratense HOM05D005703 ORTHO05D006643 1.2e-106 390.6 280 70.0
VMungo1127G0812 Vigna mungo HOM05D005703 ORTHO05D006643 2.1e-106 389.8 291 67.0
Nn6g32200 Nelumbo nucifera HOM05D005703 ORTHO05D006643 3.6e-106 389.0 279 69.9
Sc14g0002020 Simmondsia chinensis HOM05D005703 ORTHO05D006643 7.9e-106 387.9 280 70.0
Psat7g139960 Pisum sativum HOM05D005703 ORTHO05D006643 2.5e-104 382.9 279 71.3
FAN15G0097 Fragaria x ananassa HOM05D005703 ORTHO05D006643 7.4e-104 381.3 352 58.8
MSTRG.20056 Avicennia marina HOM05D005703 ORTHO05D006643 1.7e-103 380.2 280 68.9
Migut.B00193 Erythranthe guttata HOM05D005703 ORTHO05D006643 1.7e-103 380.2 277 70.4
Prupe.8G088000 Prunus persica HOM05D005703 ORTHO05D006643 2.2e-103 379.8 280 71.1
AUR62010417 Chenopodium quinoa HOM05D005703 ORTHO05D006643 2.8e-103 379.4 354 58.2
ATR0661G148 Amborella trichopoda HOM05D005703 ORTHO05D006643 6.3e-103 378.3 280 68.9
Lsat_1_v5_gn_5_125081 Lactuca sativa HOM05D005703 ORTHO05D006643 2.4e-102 376.3 338 62.1
AUR62016798 Chenopodium quinoa HOM05D005703 ORTHO05D006643 3.1e-102 375.9 369 56.6
Os09g0531100 Oryza sativa ssp. japonica HOM05D005703 ORTHO05D006643 3.1e-102 375.9 282 67.0
CDE09G1081 Ceratophyllum demersum HOM05D005703 ORTHO05D006643 4.1e-102 375.6 315 62.9
HPP92_025877 Vanilla planifolia HOM05D005703 ORTHO05D006643 2.0e-101 373.2 278 68.3
Phvul.011G040900 Phaseolus vulgaris HOM05D005703 ORTHO05D006643 1.6e-98 363.6 256 68.8
Nitab4.5_0011132g0020 Nicotiana tabacum HOM05D005703 ORTHO05D006643 3.6e-98 362.5 289 65.7
Zm00001eb353590 Zea mays HOM05D005703 ORTHO05D006643 3.6e-98 362.5 281 65.8
arahy.Tifrunner.gnm1.ann1.R55P3J Arachis hypogaea HOM05D005703 ORTHO05D006643 3.3e-96 355.9 269 66.2
Haze_02308 Corylus avellana HOM05D005703 ORTHO05D006643 1.1e-94 350.9 323 59.1
Dinv23475 Davidia involucrata HOM05D005703 ORTHO05D006643 1.0e-92 344.4 252 70.6
SalBow6G5125 Salvia bowleyana HOM05D005703 ORTHO05D006643 2.9e-92 342.8 328 57.3
MELO3C013421.2 Cucumis melo HOM05D005703 ORTHO05D006643 1.1e-91 340.9 278 65.5
BcaB06g27102 Brassica carinata HOM05D005703 ORTHO05D006643 3.6e-90 335.9 260 72.3
Hma1.2p1_0066F.1_g035920 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 3.6e-90 335.9 278 62.9
ClCG02G004580 Citrullus lanatus HOM05D005703 ORTHO05D006643 1.0e-89 334.3 293 63.1
SGA_v2.0_scaffold58G20483 Striga asiatica HOM05D005703 ORTHO05D006643 1.0e-89 334.3 280 62.1
EL10Ac9g21670 Beta vulgaris HOM05D005703 ORTHO05D006643 2.4e-86 323.2 355 53.5
DCAR_022931 Daucus carota HOM05D005703 ORTHO05D006643 2.4e-86 323.2 278 61.9
Nitab4.5_0002723g0090 Nicotiana tabacum HOM05D005703 ORTHO05D006643 7.2e-83 311.6 277 61.0
BraA01t01909Z Brassica rapa HOM05D005703 ORTHO05D006643 3.6e-82 309.3 207 80.7
Hund00227 Selenicereus undatus HOM05D005703 ORTHO05D006643 6.1e-82 308.5 332 54.2
FAN24G3327 Fragaria x ananassa HOM05D005703 ORTHO05D006643 5.2e-81 305.4 300 55.7
vmacro17444 Vaccinium macrocarpon HOM05D005703 ORTHO05D006643 5.2e-81 305.4 298 55.7
FAN20G2472 Fragaria x ananassa HOM05D005703 ORTHO05D006643 1.2e-80 304.3 300 55.7
FAN27G2042 Fragaria x ananassa HOM05D005703 ORTHO05D006643 2.6e-80 303.1 300 55.0
CANSAT11G2682 Cannabis sativa HOM05D005703 ORTHO05D006643 7.5e-80 301.6 314 56.4
Thhalv10005656m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 4.8e-79 298.9 183 85.8
Sed0007704 Sechium edule HOM05D005703 ORTHO05D006643 6.3e-79 298.5 223 70.0
Mapoly0084s0041 Marchantia polymorpha HOM05D005703 ORTHO05D006643 1.8e-78 297.0 279 54.8
Pp3c22_4620 Physcomitrium patens HOM05D005703 ORTHO05D006643 1.6e-77 293.9 314 50.6
Lj5C191G8 Lonicera japonica HOM05D005703 ORTHO05D006643 7.7e-77 291.6 292 55.8
Cc02_g17090 Coffea canephora HOM05D005703 ORTHO05D006643 2.2e-76 290.0 198 71.7
Cfa005074 Carpinus fangiana HOM05D005703 ORTHO05D006643 3.0e-73 279.6 244 63.5
SMO356G0671 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 5.2e-73 278.9 268 54.5
SMO290G0004 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 1.5e-72 277.3 269 53.9
SMO290G0013 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 2.0e-72 276.9 269 54.3
unitig_0.g54 Utricularia gibba HOM05D005703 ORTHO05D006643 5.4e-70 268.9 198 68.2
SMO356G0278 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 4.2e-67 259.2 269 52.4
Gohir.A12G041600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 1.6e-61 240.7 164 75.0
AagrBONN_evm.TU.Sc2ySwM_228.378 Anthoceros agrestis HOM05D005703 ORTHO05D006643 2.9e-55 219.9 201 58.2
BolC1t00937H Brassica oleracea HOM05D005703 ORTHO05D006643 2.9e-55 219.9 147 81.0
C01p09750 Brassica napus HOM05D005703 ORTHO05D006643 5.4e-54 215.7 185 67.0
Duzib132G0736 Durio zibethinus HOM05D005703 ORTHO05D006643 5.4e-54 215.7 319 43.3
BolC2t11489H Brassica oleracea HOM05D005703 ORTHO05D006643 6.2e-50 202.2 184 65.2
BolC4t23697H Brassica oleracea HOM05D005703 ORTHO05D006643 9.8e-48 194.9 182 61.5
BcaC04g19425 Brassica carinata HOM05D005703 ORTHO05D006643 3.7e-47 193.0 225 55.1
C04p21760 Brassica napus HOM05D005703 ORTHO05D006643 2.3e-44 183.7 206 54.9
C09p55850 Brassica napus HOM05D005703 ORTHO05D006643 8.6e-44 181.8 208 54.8
C02p54250 Brassica napus HOM05D005703 ORTHO05D006643 9.9e-40 168.3 210 53.8
MBI01_g29867_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 1.7e-39 167.5 134 66.4
TAR381G0871 Trochodendron aralioides HOM05D005703 ORTHO05D006643 2.9e-39 166.8 132 60.6
BcaC01g06448 Brassica carinata HOM05D005703 ORTHO05D006643 8.6e-36 155.2 135 67.4
CBR_g49480 Chara braunii HOM05D005703 ORTHO05D006643 3.0e-28 130.2 247 33.2
Potri.009G121902 Populus trichocarpa HOM05D005703 ORTHO05D006643 1.1e-27 128.3 106 64.2
Cre08.g372000 Chlamydomonas reinhardtii HOM05D005703 ORTHO05D006643 2.1e-26 124.0 260 32.7
C03p15450 Brassica napus HOM05D005703 ORTHO05D006643 1.4e-25 121.3 140 55.0
PRCOL_00000952 Prasinoderma coloniale HOM05D005703 ORTHO05D006643 1.8e-25 120.9 233 33.0
HanXRQChr14g0433731 Helianthus annuus HOM05D005703 ORTHO05D006643 6.9e-25 119.0 79 79.7
BcaC09g52221 Brassica carinata HOM05D005703 ORTHO05D006643 1.3e-23 114.8 66 86.4
QL11p045593 Quercus lobata HOM05D005703 ORTHO05D006643 1.3e-23 114.8 71 70.4
BolC1t00936H Brassica oleracea HOM05D005703 ORTHO05D006643 1.6e-21 107.8 60 90.0
C03p56750 Brassica napus HOM05D005703 ORTHO05D006643 6.0e-21 105.9 130 50.8
SEGI_33335 Sequoiadendron giganteum HOM05D005703 ORTHO05D006643 6.0e-21 105.9 90 54.4
C03p56740 Brassica napus HOM05D005703 ORTHO05D006643 1.0e-20 105.1 76 73.7
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 5.1e-20 102.8 71 70.4
Cc02_g17080 Coffea canephora HOM05D005703 ORTHO05D006643 9.6e-19 98.6 72 69.4
unitig_0.g53 Utricularia gibba HOM05D005703 ORTHO05D006643 9.0e-17 92.0 111 49.5
MBI01_g29866_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 1.5e-16 91.3 66 66.7
Lsat_1_v5_gn_1_61800 Lactuca sativa HOM05D005428 ORTHO05D002547 6.9e-09 65.9 57 63.2
MCO02G267 Micromonas commoda HOM05D005703 ORTHO05D006643 1.2e-08 65.1 141 31.9
CAN.G878.5 Capsicum annuum HOM05D000269 ORTHO05D000216 4.9e-07 59.7 40 65.0
Oeu037764.1 Olea europaea HOM05D005703 ORTHO05D006643 8.4e-07 58.9 36 69.4
AUR62033094 Chenopodium quinoa HOM05D005703 ORTHO05D006643 1.9e-06 57.8 49 59.2


User provided reference genes

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