Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p41150 Brassica napus HOM05D002293 ORTHO05D005475 5.5e-125 451.1 241 100.0
BcaB08g35009 Brassica carinata HOM05D002293 ORTHO05D005475 2.3e-123 445.7 241 98.8
BcaC07g41114 Brassica carinata HOM05D002293 ORTHO05D005475 8.8e-123 443.7 242 99.2
BolC8t51682H Brassica oleracea HOM05D002293 ORTHO05D005475 8.8e-123 443.7 242 99.2
BraA04t17281Z Brassica rapa HOM05D002293 ORTHO05D005475 1.5e-122 443.0 241 98.3
A04p16460 Brassica napus HOM05D002293 ORTHO05D005475 9.8e-122 440.3 242 98.3
BcaB06g27791 Brassica carinata HOM05D002293 ORTHO05D005475 2.8e-121 438.7 241 97.1
BcaC02g08759 Brassica carinata HOM05D002293 ORTHO05D005475 3.7e-121 438.3 241 97.5
C04p50970 Brassica napus HOM05D002293 ORTHO05D005475 3.7e-121 438.3 241 97.5
BraA09t41184Z Brassica rapa HOM05D002293 ORTHO05D005475 1.8e-120 436.0 244 97.5
Sp4g00960 Schrenkiella parvula HOM05D002293 ORTHO05D005475 4.1e-120 434.9 241 96.3
A09p57920 Brassica napus HOM05D002293 ORTHO05D005475 1.2e-119 433.3 244 97.1
BolC4t26688H Brassica oleracea HOM05D002293 ORTHO05D005475 3.5e-119 431.8 246 95.1
Thhalv10000307m.g Eutrema salsugineum HOM05D002293 ORTHO05D005475 3.5e-119 431.8 241 95.0
Carub.0004s0090 Capsella rubella HOM05D002293 ORTHO05D005475 6.1e-116 421.0 241 92.9
AT2G21870 Arabidopsis thaliana HOM05D002293 ORTHO05D005475 1.8e-115 419.5 241 92.1
CARHR112910 Cardamine hirsuta HOM05D002293 ORTHO05D005475 3.4e-114 415.2 241 91.3
Aa31LG7G14740 Aethionema arabicum HOM05D002293 ORTHO05D005475 3.8e-110 401.7 241 87.1
THA.LOC104804134 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 1.6e-100 369.8 241 81.3
THA.LOC104824852 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 2.8e-100 369.0 241 81.3
THA.LOC104807725 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 3.1e-99 365.5 243 81.1
GSVIVG01022249001 Vitis vinifera HOM05D002293 ORTHO05D005475 3.6e-92 342.0 241 73.4
AL4G11180 Arabidopsis lyrata HOM05D002293 ORTHO05D005475 1.1e-91 340.5 196 91.8
Manes.12G143700 Manihot esculenta HOM05D002293 ORTHO05D005475 1.1e-91 340.5 241 74.3
QL06p031785 Quercus lobata HOM05D002293 ORTHO05D005475 1.4e-91 340.1 240 72.9
CiPaw.04G090200 Carya illinoinensis HOM05D002293 ORTHO05D005475 5.2e-91 338.2 243 73.3
CiPaw.03G133000 Carya illinoinensis HOM05D002293 ORTHO05D005475 2.6e-90 335.9 241 72.6
MD01G1021000 Malus domestica HOM05D002293 ORTHO05D005475 7.5e-90 334.3 241 72.6
MD15G1331100 Malus domestica HOM05D002293 ORTHO05D005475 7.5e-90 334.3 241 73.0
Eucgr.H04880 Eucalyptus grandis HOM05D002293 ORTHO05D005475 9.8e-90 334.0 241 71.4
TWI75G0492 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 1.3e-89 333.6 241 73.0
Prupe.6G169300 Prunus persica HOM05D002293 ORTHO05D005475 3.7e-89 332.0 241 72.6
PGR102G1541 Punica granatum HOM05D002293 ORTHO05D005475 3.7e-89 332.0 241 72.2
Nn3g18603 Nelumbo nucifera HOM05D002293 ORTHO05D005475 8.3e-89 330.9 241 71.8
Sc03g0004490 Simmondsia chinensis HOM05D002293 ORTHO05D005475 8.3e-89 330.9 241 72.2
Atru.chr4.451 Acer truncatum HOM05D002293 ORTHO05D005475 1.9e-88 329.7 241 72.2
CSS0016943 Camellia sinensis var. sinensis HOM05D002293 ORTHO05D005475 3.2e-88 328.9 242 70.2
Cfa002767 Carpinus fangiana HOM05D002293 ORTHO05D005475 4.1e-88 328.6 241 71.0
Ciclev10026373m.g Citrus clementina HOM05D002293 ORTHO05D005475 4.1e-88 328.6 241 72.2
Sed0002744 Sechium edule HOM05D002293 ORTHO05D005475 4.1e-88 328.6 241 69.7
Gohir.A11G054000 Gossypium hirsutum HOM05D002293 ORTHO05D005475 5.4e-88 328.2 241 71.4
Hma1.2p1_2282F.1_g318820 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 7.1e-88 327.8 242 71.9
Dinv42674 Davidia involucrata HOM05D002293 ORTHO05D005475 9.2e-88 327.4 241 71.0
RcHm_v2.0_Chr2g0117231 Rosa chinensis HOM05D002293 ORTHO05D005475 9.2e-88 327.4 241 71.8
vmacro08972 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 9.2e-88 327.4 241 71.4
Aqoxy6G00441 Aquilegia oxysepala HOM05D002293 ORTHO05D005475 1.2e-87 327.0 242 70.7
TWI31G0415 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 1.2e-87 327.0 241 71.4
CsaV3_6G042260 Cucumis sativus L. HOM05D002293 ORTHO05D005475 2.1e-87 326.2 241 68.9
Haze_25060 Corylus avellana HOM05D002293 ORTHO05D005475 2.7e-87 325.9 241 70.5
Gohir.D11G057500 Gossypium hirsutum HOM05D002293 ORTHO05D005475 2.7e-87 325.9 241 71.0
Dinv41022 Davidia involucrata HOM05D002293 ORTHO05D005475 4.6e-87 325.1 242 71.5
Actinidia12214 Actinidia chinensis HOM05D002293 ORTHO05D005475 6.0e-87 324.7 241 71.4
ClCG01G015980 Citrullus lanatus HOM05D002293 ORTHO05D005475 7.8e-87 324.3 235 70.2
Cpa.g.sc72.4 Carica papaya HOM05D002293 ORTHO05D005475 1.7e-86 323.2 241 70.5
Gohir.A11G196900 Gossypium hirsutum HOM05D002293 ORTHO05D005475 2.3e-86 322.8 242 71.1
Glyma.05G184800 Glycine max HOM05D002293 ORTHO05D005475 6.6e-86 321.2 242 70.7
Gorai.007G062700 Gossypium raimondii HOM05D002293 ORTHO05D005475 6.6e-86 321.2 241 70.5
SalBow6G4022 Salvia bowleyana HOM05D002293 ORTHO05D005475 6.6e-86 321.2 245 70.6
Gohir.D11G228400 Gossypium hirsutum HOM05D002293 ORTHO05D005475 1.5e-85 320.1 242 69.4
PSO675G2787 Papaver somniferum HOM05D002293 ORTHO05D005475 2.5e-85 319.3 242 69.8
Potri.007G079500 Populus trichocarpa HOM05D002293 ORTHO05D005475 3.3e-85 318.9 241 68.0
Duzib264G1168 Durio zibethinus HOM05D002293 ORTHO05D005475 5.6e-85 318.2 241 68.0
HanXRQChr04g0115601 Helianthus annuus HOM05D002293 ORTHO05D005475 7.3e-85 317.8 239 71.5
Actinidia05381 Actinidia chinensis HOM05D002293 ORTHO05D005475 9.5e-85 317.4 242 69.0
Hma1.2p1_0358F.1_g134890 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 9.5e-85 317.4 242 69.4
MSTRG.24489 Avicennia marina HOM05D002293 ORTHO05D005475 1.2e-84 317.0 244 68.4
CANSAT01G0963 Cannabis sativa HOM05D002293 ORTHO05D005475 1.2e-84 317.0 242 67.8
ECA247G2680 Erigeron canadensis HOM05D002293 ORTHO05D005475 1.6e-84 316.6 238 71.0
FvH4_1g22890 Fragaria vesca HOM05D002293 ORTHO05D005475 1.6e-84 316.6 241 69.7
PSO541G6166 Papaver somniferum HOM05D002293 ORTHO05D005475 1.6e-84 316.6 242 69.4
Glyma.08G142800 Glycine max HOM05D002293 ORTHO05D005475 3.6e-84 315.5 242 68.2
HanXRQChr02g0042411 Helianthus annuus HOM05D002293 ORTHO05D005475 4.7e-84 315.1 239 70.7
Nn5g28871 Nelumbo nucifera HOM05D002293 ORTHO05D005475 6.2e-84 314.7 244 70.1
Migut.N02943 Erythranthe guttata HOM05D002293 ORTHO05D005475 8.1e-84 314.3 244 68.4
Oeu046075.1 Olea europaea HOM05D002293 ORTHO05D005475 8.1e-84 314.3 244 68.0
Lj4g0016673 Lotus japonicus HOM05D002293 ORTHO05D005475 1.1e-83 313.9 242 68.6
Thecc.01G115200 Theobroma cacao HOM05D002293 ORTHO05D005475 2.3e-83 312.8 241 67.2
Rhsim08G0005300 Rhododendron simsii HOM05D002293 ORTHO05D005475 1.2e-82 310.5 282 62.1
Medtr8g092040 Medicago truncatula HOM05D002293 ORTHO05D005475 1.5e-82 310.1 245 68.2
Ca_17689_v3 Cicer arietinum L. HOM05D002293 ORTHO05D005475 3.4e-82 308.9 242 68.6
Potri.005G085500 Populus trichocarpa HOM05D002293 ORTHO05D005475 1.3e-81 307.0 241 66.4
HPP92_010855 Vanilla planifolia HOM05D002293 ORTHO05D005475 1.3e-81 307.0 244 68.0
ATR0736G207 Amborella trichopoda HOM05D002293 ORTHO05D005475 1.7e-81 306.6 242 66.9
Phvul.002G265700 Phaseolus vulgaris HOM05D002293 ORTHO05D005475 2.2e-81 306.2 242 65.3
EL10Ac6g14774 Beta vulgaris HOM05D002293 ORTHO05D005475 2.9e-81 305.8 241 66.0
Lsat_1_v5_gn_9_42461 Lactuca sativa HOM05D002293 ORTHO05D005475 3.7e-81 305.4 237 68.4
Sabra07G0066700 Salix brachista HOM05D002293 ORTHO05D005475 3.7e-81 305.4 270 61.5
AUR62003295 Chenopodium quinoa HOM05D002293 ORTHO05D005475 4.9e-81 305.1 243 66.7
PGSC0003DMG400025052 Solanum tuberosum HOM05D002293 ORTHO05D005475 8.4e-81 304.3 243 67.5
arahy.Tifrunner.gnm1.ann1.GC7XSK Arachis hypogaea HOM05D002293 ORTHO05D005475 1.1e-80 303.9 242 67.8
Lalb_Chr07g0184761 Lupinus albus HOM05D002293 ORTHO05D005475 1.1e-80 303.9 241 65.6
VMungo0251G0649 Vigna mungo HOM05D002293 ORTHO05D005475 1.4e-80 303.5 242 65.3
Nn2g12418 Nelumbo nucifera HOM05D002293 ORTHO05D005475 1.9e-80 303.1 241 68.9
unitig_8.g4827 Utricularia gibba HOM05D002293 ORTHO05D005475 3.2e-80 302.4 243 67.5
Sopen04g028170 Solanum pennellii HOM05D002293 ORTHO05D005475 3.5e-79 298.9 243 66.3
SGA_v2.0_scaffold54G19692 Striga asiatica HOM05D002293 ORTHO05D005475 3.5e-79 298.9 243 66.3
Solyc04g072047.1 Solanum lycopersicum HOM05D002293 ORTHO05D005475 4.6e-79 298.5 243 65.8
Dinv19470 Davidia involucrata HOM05D002293 ORTHO05D005475 6.0e-79 298.1 220 70.5
Hund19634 Selenicereus undatus HOM05D002293 ORTHO05D005475 7.8e-79 297.7 243 65.8
Nitab4.5_0004252g0010 Nicotiana tabacum HOM05D002293 ORTHO05D005475 6.6e-78 294.7 258 64.3
TPR.G20796 Trifolium pratense HOM05D002293 ORTHO05D005475 1.5e-77 293.5 246 65.4
Lalb_Chr12g0203481 Lupinus albus HOM05D002293 ORTHO05D005475 3.3e-77 292.4 226 67.7
Lsat_1_v5_gn_1_5861 Lactuca sativa HOM05D002293 ORTHO05D005475 5.6e-77 291.6 281 60.1
CAN.G1252.8 Capsicum annuum HOM05D002293 ORTHO05D005475 9.6e-77 290.8 222 68.5
Gorai.007G246300 Gossypium raimondii HOM05D002293 ORTHO05D005475 2.8e-76 289.3 221 68.3
AUR62027167 Chenopodium quinoa HOM05D002293 ORTHO05D005475 3.6e-76 288.9 246 62.6
Nitab4.5_0001000g0170 Nicotiana tabacum HOM05D002293 ORTHO05D005475 3.6e-76 288.9 258 63.6
Sabra05G0070400 Salix brachista HOM05D002293 ORTHO05D005475 1.8e-75 286.6 290 55.5
Duzib147G0641 Durio zibethinus HOM05D002293 ORTHO05D005475 3.1e-75 285.8 222 68.9
TAR376G0974 Trochodendron aralioides HOM05D002293 ORTHO05D005475 3.1e-75 285.8 197 75.1
Ah.03g141640 Amaranthus hybridus HOM05D002293 ORTHO05D005475 4.0e-75 285.4 223 66.8
SGA_v2.0_scaffold364G49965 Striga asiatica HOM05D002293 ORTHO05D005475 8.9e-75 284.3 202 70.3
Zm00001eb231220 Zea mays HOM05D002293 ORTHO05D005475 3.4e-74 282.3 244 61.9
Lj7A386T88 Lonicera japonica HOM05D002293 ORTHO05D005475 5.8e-74 281.6 196 74.5
Lj2A567T21 Lonicera japonica HOM05D002293 ORTHO05D005475 7.6e-74 281.2 196 73.5
Zm00001eb209000 Zea mays HOM05D002293 ORTHO05D005475 9.9e-74 280.8 244 61.1
Sc16g0004130 Simmondsia chinensis HOM05D002293 ORTHO05D005475 1.7e-73 280.0 196 73.0
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 1.1e-72 277.3 231 63.2
Ah.02g125930 Amaranthus hybridus HOM05D002293 ORTHO05D005475 7.1e-72 274.6 196 70.9
MELO3C007468.2 Cucumis melo HOM05D002293 ORTHO05D005475 9.3e-72 274.2 196 69.9
FAN26G3412 Fragaria x ananassa HOM05D002293 ORTHO05D005475 9.3e-72 274.2 199 71.4
FAN28G2749 Fragaria x ananassa HOM05D002293 ORTHO05D005475 1.6e-71 273.5 199 71.9
FAN19G1282 Fragaria x ananassa HOM05D002293 ORTHO05D005475 2.1e-71 273.1 204 70.1
FAN23G0553 Fragaria x ananassa HOM05D002293 ORTHO05D005475 2.1e-71 273.1 199 71.4
Duzib187G0135 Durio zibethinus HOM05D002293 ORTHO05D005475 4.6e-71 271.9 196 71.9
arahy.Tifrunner.gnm1.ann1.LE5EW2 Arachis hypogaea HOM05D002293 ORTHO05D005475 1.3e-70 270.4 197 71.1
Oeu061454.1 Olea europaea HOM05D002293 ORTHO05D005475 8.7e-70 267.7 276 55.4
Psat0s281g0080 Pisum sativum HOM05D002293 ORTHO05D005475 2.1e-63 246.5 242 57.9
Glyma.14G174100 Glycine max HOM05D002293 ORTHO05D005475 4.6e-63 245.4 175 72.0
Hund03526 Selenicereus undatus HOM05D002293 ORTHO05D005475 6.6e-62 241.5 220 59.5
TAR381G0840 Trochodendron aralioides HOM05D002293 ORTHO05D005475 5.6e-61 238.4 179 67.6
COL.COLO4_10988 Corchorus olitorius HOM05D002293 ORTHO05D005475 8.1e-60 234.6 188 63.8
Peaxi162Scf17813g00005 Petunia axillaris HOM05D002293 ORTHO05D005475 6.7e-54 214.9 155 72.9
TAR625G1205 Trochodendron aralioides HOM05D002293 ORTHO05D005475 1.5e-53 213.8 196 61.2
CDE04G0337 Ceratophyllum demersum HOM05D002293 ORTHO05D005475 1.2e-50 204.1 210 54.8
Haze_25047 Corylus avellana HOM05D002293 ORTHO05D005475 3.0e-46 189.5 135 69.6
Zm00001eb114730 Zea mays HOM05D002293 ORTHO05D005475 1.1e-45 187.6 155 63.9
Lalb_Chr13g0296261 Lupinus albus HOM05D002293 ORTHO05D005475 3.6e-39 166.0 112 77.7
Lalb_Chr13g0296251 Lupinus albus HOM05D002293 ORTHO05D005475 6.9e-35 151.8 130 58.5
Rhsim10G0148500 Rhododendron simsii HOM05D002293 ORTHO05D005475 1.2e-34 151.0 149 56.4
HPP92_010897 Vanilla planifolia HOM05D002293 ORTHO05D005475 4.2e-32 142.5 223 45.7
vmacro12893 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 9.4e-32 141.4 161 49.7
Mapoly0014s0184 Marchantia polymorpha HOM05D002293 ORTHO05D005475 2.8e-28 129.8 198 38.9
Pp3c9_7910 Physcomitrium patens HOM05D002293 ORTHO05D005475 5.9e-26 122.1 217 36.4
Nn8g40924 Nelumbo nucifera HOM05D002293 ORTHO05D005475 1.7e-25 120.6 225 39.6
AagrBONN_evm.TU.Sc2ySwM_117.3341 Anthoceros agrestis HOM05D002293 ORTHO05D005475 5.5e-24 115.5 237 32.9
CBR_g39756 Chara braunii HOM05D002293 ORTHO05D005475 3.6e-23 112.8 193 36.8
CBR_g72646 Chara braunii HOM05D002293 ORTHO05D005475 6.1e-23 112.1 193 36.3
Peaxi162Scf00226g00011 Petunia axillaris HOM05D002293 ORTHO05D005475 8.8e-22 108.2 99 57.6
vmacro18642 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 1.1e-19 101.3 236 33.9
unitig_744.g24089 Utricularia gibba HOM05D002293 ORTHO05D005475 5.0e-17 92.4 84 63.1
ATR0736G144 Amborella trichopoda HOM05D006066 ORTHO05D007720 6.5e-17 92.0 97 50.5
Nn2g12848 Nelumbo nucifera HOM05D002293 ORTHO05D005475 2.8e-12 76.6 178 37.1
Gohir.D08G112008 Gossypium hirsutum HOM05D001556 ORTHO05D005475 6.3e-12 75.5 59 59.3
BcaC08g42952 Brassica carinata HOM05D004411 ORTHO05D032662 1.2e-10 71.2 50 82.0
BcaC09g49352 Brassica carinata HOM05D000853 ORTHO05D000723 1.6e-10 70.9 40 97.5
SEGI_39212 Sequoiadendron giganteum HOM05D002293 ORTHO05D005475 1.6e-10 70.9 64 60.9
C06p01940 Brassica napus HOM05D004411 ORTHO05D032662 5.0e-09 65.9 138 40.6
MCO03G035 Micromonas commoda HOM05D002293 ORTHO05D005475 1.6e-07 60.8 185 28.1


User provided reference genes

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