Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p40910 Brassica napus HOM05D003386 ORTHO05D000129 2.4e-178 628.6 304 100.0
Thhalv10000539m.g Eutrema salsugineum HOM05D000209 ORTHO05D000129 2.1e-49 200.3 231 48.1
BcaB08g37407 Brassica carinata HOM05D000209 ORTHO05D000129 3.5e-44 183.0 260 43.5
CARHR011920 Cardamine hirsuta HOM05D000209 ORTHO05D000129 1.9e-42 177.2 275 40.0
AL1G22750 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 2.2e-38 163.7 267 38.6
Carub.0001s1125 Capsella rubella HOM05D000209 ORTHO05D000129 2.5e-37 160.2 268 37.7
BcaC07g41089 Brassica carinata HOM05D007232 ORTHO05D000129 3.2e-37 159.8 74 98.6
Carub.0001s1126 Capsella rubella HOM05D000209 ORTHO05D000129 1.3e-35 154.5 263 39.2
BolC8t51657H Brassica oleracea HOM05D007232 ORTHO05D000652 1.5e-34 151.0 209 45.9
AT1G11620 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 5.7e-34 149.1 262 36.6
AT1G31510 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 1.6e-28 131.0 223 39.9
Thhalv10000316m.g Eutrema salsugineum HOM05D003386 ORTHO05D004061 2.4e-16 90.5 86 59.3
AL5G30970 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 3.5e-15 86.7 256 28.9
BcaB01g00583 Brassica carinata HOM05D000209 ORTHO05D000129 3.5e-15 86.7 271 27.7
BcaB08g35050 Brassica carinata HOM05D003386 ORTHO05D004061 5.9e-15 85.9 61 70.5
AL4G11710 Arabidopsis lyrata HOM05D003386 ORTHO05D004061 7.7e-15 85.5 61 72.1
BcaC07g39531 Brassica carinata HOM05D000209 ORTHO05D000129 7.7e-15 85.5 261 28.0
BcaB01g00584 Brassica carinata HOM05D000209 ORTHO05D000129 1.0e-14 85.1 277 27.4
A09p43750 Brassica napus HOM05D000209 ORTHO05D000129 1.0e-14 85.1 189 31.2
BraA03t10482Z Brassica rapa HOM05D000209 ORTHO05D000129 1.0e-14 85.1 274 28.5
Carub.0004s0137 Capsella rubella HOM05D003386 ORTHO05D004061 1.0e-14 85.1 74 66.2
A03p11710 Brassica napus HOM05D000209 ORTHO05D000129 1.3e-14 84.7 274 28.5
BcaB01g04573 Brassica carinata HOM05D000209 ORTHO05D000129 1.7e-14 84.3 270 27.4
A09p43800 Brassica napus HOM05D000209 ORTHO05D000129 3.8e-14 83.2 217 29.5
C08p25790 Brassica napus HOM05D000209 ORTHO05D000129 3.8e-14 83.2 261 28.0
BolC8t50202H Brassica oleracea HOM05D000209 ORTHO05D000129 3.8e-14 83.2 226 29.6
Sp4g01270 Schrenkiella parvula HOM05D003386 ORTHO05D004061 5.0e-14 82.8 61 68.9
AT2G22230 Arabidopsis thaliana HOM05D003386 ORTHO05D004061 6.5e-14 82.4 61 68.9
Thhalv10011016m.g Eutrema salsugineum HOM05D000209 ORTHO05D000129 1.5e-13 81.3 268 23.5
C08p25810 Brassica napus HOM05D000209 ORTHO05D000129 2.5e-13 80.5 196 29.1
C08p25820 Brassica napus HOM05D000209 ORTHO05D000129 2.5e-13 80.5 189 29.6
C08p48120 Brassica napus HOM05D000507 ORTHO05D000416 2.5e-13 80.5 74 54.1
BolC8t50198H Brassica oleracea HOM05D000209 ORTHO05D000129 2.5e-13 80.5 196 29.1
BcaC07g39535 Brassica carinata HOM05D000209 ORTHO05D000129 3.2e-13 80.1 217 29.0
A09p43770 Brassica napus HOM05D000209 ORTHO05D000129 3.2e-13 80.1 216 28.7
BraA09t39832Z Brassica rapa HOM05D000209 ORTHO05D000129 3.2e-13 80.1 217 28.6
A09p43820 Brassica napus HOM05D000209 ORTHO05D000129 4.2e-13 79.7 217 28.6
BcaC07g39532 Brassica carinata HOM05D000209 ORTHO05D000129 5.5e-13 79.3 196 29.1
BcaC07g39534 Brassica carinata HOM05D000209 ORTHO05D000129 5.5e-13 79.3 196 29.1
A04p16740 Brassica napus HOM05D003386 ORTHO05D004061 5.5e-13 79.3 61 67.2
AT3G16590 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 9.4e-13 78.6 265 27.2
BraA04t17306Z Brassica rapa HOM05D003386 ORTHO05D004061 9.4e-13 78.6 61 65.6
BraA09t39838Z Brassica rapa HOM05D000209 ORTHO05D000129 1.2e-12 78.2 217 28.1
CARHR113420 Cardamine hirsuta HOM05D003386 ORTHO05D004061 3.6e-12 76.6 76 60.5
A09p57710 Brassica napus HOM05D007232 ORTHO05D000652 4.7e-12 76.3 41 87.8
BraA09t41164Z Brassica rapa HOM05D007232 ORTHO05D000652 4.7e-12 76.3 41 87.8
Carub.0005s2293 Capsella rubella HOM05D000209 ORTHO05D000129 1.4e-11 74.7 256 27.7
BcaC02g08725 Brassica carinata HOM05D003386 ORTHO05D004061 1.8e-11 74.3 61 62.3
C04p51290 Brassica napus HOM05D003386 ORTHO05D004061 1.8e-11 74.3 61 62.3
BolC4t26719H Brassica oleracea HOM05D003386 ORTHO05D004061 1.8e-11 74.3 61 62.3
THA.LOC104824866 Tarenaya hassleriana HOM05D003386 ORTHO05D004061 2.3e-11 73.9 60 65.0
AL3G29510 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 2.6e-10 70.5 264 26.9
BraA09t41163Z Brassica rapa HOM05D003386 ORTHO05D004061 2.8e-09 67.0 50 66.0
AT3G21410 Arabidopsis thaliana HOM05D000209 ORTHO05D000129 4.8e-09 66.2 266 25.2
A09p43790 Brassica napus HOM05D000209 ORTHO05D000129 4.8e-09 66.2 161 28.0
Carub.0003s1632 Capsella rubella HOM05D000209 ORTHO05D000129 1.4e-08 64.7 251 24.3
AL1G22740 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 1.8e-08 64.3 92 40.2
AL3G35490 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 7.0e-08 62.4 283 24.4
C08p25850 Brassica napus HOM05D000209 ORTHO05D000129 1.6e-07 61.2 153 30.1
BolC8t50200H Brassica oleracea HOM05D000209 ORTHO05D000129 1.6e-07 61.2 207 27.5
Thhalv10011043m.g Eutrema salsugineum HOM05D000209 ORTHO05D000129 1.6e-07 61.2 154 31.8
BcaB01g05546 Brassica carinata HOM05D003386 ORTHO05D004061 3.5e-07 60.1 70 50.0
C03p04930 Brassica napus HOM05D003386 ORTHO05D004061 3.5e-07 60.1 70 50.0
BolC3t13024H Brassica oleracea HOM05D003386 ORTHO05D004061 3.5e-07 60.1 70 50.0
A02p00360 Brassica napus HOM05D003386 ORTHO05D004061 1.0e-06 58.5 78 50.0
C02p04300 Brassica napus HOM05D003386 ORTHO05D004061 1.0e-06 58.5 78 50.0
BolC2t06394H Brassica oleracea HOM05D003386 ORTHO05D004061 1.0e-06 58.5 78 50.0
BraA02t05021Z Brassica rapa HOM05D003386 ORTHO05D004061 1.0e-06 58.5 64 53.1
FvH4_1g29150 Fragaria vesca HOM05D000007 ORTHO05D000521 1.0e-06 58.5 257 25.7
PGR102G0128 Punica granatum HOM05D003386 ORTHO05D004061 1.3e-06 58.2 72 51.4
A03p04440 Brassica napus HOM05D003386 ORTHO05D004061 2.2e-06 57.4 70 50.0
A03p40450 Brassica napus HOM05D000209 ORTHO05D000129 2.2e-06 57.4 294 23.1
BcaC06g31389 Brassica carinata HOM05D000209 ORTHO05D000129 2.9e-06 57.0 296 23.6
BraA03t09789Z Brassica rapa HOM05D003386 ORTHO05D004061 3.8e-06 56.6 70 48.6
BraA03t13203Z Brassica rapa HOM05D000209 ORTHO05D000129 6.5e-06 55.8 266 24.1
CANSAT54G2405 Cannabis sativa HOM05D000007 ORTHO05D000039 6.5e-06 55.8 215 23.7
Carub.0008s1027 Capsella rubella HOM05D000209 ORTHO05D000129 6.5e-06 55.8 275 23.3
Thhalv10002981m.g Eutrema salsugineum HOM05D000209 ORTHO05D000129 6.5e-06 55.8 239 23.8
Thhalv10014496m.g Eutrema salsugineum HOM05D003386 ORTHO05D004061 6.5e-06 55.8 76 47.4
Carub.0006s0862 Capsella rubella HOM05D003386 ORTHO05D004061 8.5e-06 55.5 78 43.6


User provided reference genes

Program Settings