Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p40320 Brassica napus HOM05D003137 ORTHO05D003433 1.1e-65 253.1 121 100.0
BolC8t51600H Brassica oleracea HOM05D003137 ORTHO05D003433 1.1e-65 253.1 121 100.0
BcaB01g03986 Brassica carinata HOM05D003137 ORTHO05D003433 5.7e-46 187.6 118 75.4
BcaC01g05910 Brassica carinata HOM05D003137 ORTHO05D003433 7.5e-46 187.2 129 70.5
BolC3t14499H Brassica oleracea HOM05D003137 ORTHO05D003433 7.5e-46 187.2 129 70.5
C03p21160 Brassica napus HOM05D003137 ORTHO05D003433 1.3e-45 186.4 129 69.8
C04p61380 Brassica napus HOM05D003137 ORTHO05D003433 1.3e-45 186.4 123 74.0
A03p18130 Brassica napus HOM05D003137 ORTHO05D003433 3.7e-45 184.9 129 69.8
BraA03t11072Z Brassica rapa HOM05D003137 ORTHO05D003433 3.7e-45 184.9 129 69.8
Thhalv10016614m.g Eutrema salsugineum HOM05D003137 ORTHO05D003433 2.4e-44 182.2 118 72.9
AL4G27690 Arabidopsis lyrata HOM05D003137 ORTHO05D003433 5.4e-44 181.0 118 72.9
CARHR126140 Cardamine hirsuta HOM05D003137 ORTHO05D003433 5.4e-44 181.0 118 72.0
Sp4g14700 Schrenkiella parvula HOM05D003137 ORTHO05D003433 1.6e-43 179.5 118 72.0
C02p21320 Brassica napus HOM05D003137 ORTHO05D003433 1.3e-42 176.4 114 71.9
BolC4t27622H Brassica oleracea HOM05D003137 ORTHO05D003433 6.5e-42 174.1 116 72.4
Carub.0004s1367 Capsella rubella HOM05D003137 ORTHO05D003433 1.1e-41 173.3 118 67.8
C08p43710 Brassica napus HOM05D003137 ORTHO05D003433 1.9e-41 172.6 101 80.2
AT2G32295 Arabidopsis thaliana HOM05D003137 ORTHO05D003433 4.2e-41 171.4 118 68.6
Aa31LG5G4220 Aethionema arabicum HOM05D003137 ORTHO05D003433 2.1e-40 169.1 118 66.9
BolC5t32375H Brassica oleracea HOM05D003137 ORTHO05D003433 6.1e-40 167.5 114 68.4
BraA03t13076Z Brassica rapa HOM05D003137 ORTHO05D003433 1.3e-37 159.8 114 68.4
C09p54190 Brassica napus HOM05D003137 ORTHO05D003433 6.6e-34 147.5 128 59.4
THA.LOC104800980 Tarenaya hassleriana HOM05D003137 ORTHO05D003433 5.6e-33 144.4 122 56.6
BolC9t58293H Brassica oleracea HOM05D003137 ORTHO05D003433 7.3e-33 144.1 97 71.1
Atru.chr6.3141 Acer truncatum HOM05D003137 ORTHO05D003433 9.2e-28 127.1 117 49.6
CiPaw.03G163200 Carya illinoinensis HOM05D003137 ORTHO05D003433 1.2e-27 126.7 108 52.8
CANSAT64G2088 Cannabis sativa HOM05D003137 ORTHO05D003433 1.6e-27 126.3 126 50.0
Prupe.3G220700 Prunus persica HOM05D003137 ORTHO05D003433 2.0e-27 125.9 108 52.8
Thecc.02G162600 Theobroma cacao HOM05D003137 ORTHO05D003433 2.0e-27 125.9 122 49.2
Dinv39684 Davidia involucrata HOM05D003137 ORTHO05D003433 2.7e-27 125.6 108 53.7
MD09G1104800 Malus domestica HOM05D003137 ORTHO05D003433 2.7e-27 125.6 117 48.7
Sed0002741 Sechium edule HOM05D003137 ORTHO05D003433 2.7e-27 125.6 122 50.0
Ciclev10015128m.g Citrus clementina HOM05D003137 ORTHO05D003433 3.5e-27 125.2 108 51.9
Actinidia11210 Actinidia chinensis HOM05D003137 ORTHO05D003433 4.6e-27 124.8 126 48.4
PGR042G2833 Punica granatum HOM05D003137 ORTHO05D003433 4.6e-27 124.8 117 48.7
MD17G1092500 Malus domestica HOM05D003137 ORTHO05D003433 5.9e-27 124.4 108 50.9
MELO3C019066.2 Cucumis melo HOM05D003137 ORTHO05D003433 7.8e-27 124.0 110 53.6
CsaV3_4G029720 Cucumis sativus L. HOM05D003137 ORTHO05D003433 7.8e-27 124.0 110 53.6
FAN05G0260 Fragaria x ananassa HOM05D003137 ORTHO05D003433 7.8e-27 124.0 117 47.9
FAN09G4236 Fragaria x ananassa HOM05D003137 ORTHO05D003433 7.8e-27 124.0 117 47.9
THA.LOC104802010 Tarenaya hassleriana HOM05D003137 ORTHO05D003433 7.8e-27 124.0 106 52.8
Ciclev10020261m.g Citrus clementina HOM05D003137 ORTHO05D003433 1.0e-26 123.6 133 48.9
ECA233G5037 Erigeron canadensis HOM05D003137 ORTHO05D003433 1.3e-26 123.2 122 50.0
Gohir.D01G014700 Gossypium hirsutum HOM05D003137 ORTHO05D003433 1.3e-26 123.2 122 47.5
Gorai.002G016400 Gossypium raimondii HOM05D003137 ORTHO05D003433 1.3e-26 123.2 122 47.5
RcHm_v2.0_Chr2g0160141 Rosa chinensis HOM05D003137 ORTHO05D003433 1.3e-26 123.2 122 47.5
THA.LOC104827598 Tarenaya hassleriana HOM05D003137 ORTHO05D003433 1.3e-26 123.2 106 53.8
Gohir.A01G013400 Gossypium hirsutum HOM05D003137 ORTHO05D003433 1.7e-26 122.9 122 46.7
AL7G44570 Arabidopsis lyrata HOM05D003137 ORTHO05D003433 2.3e-26 122.5 117 47.9
BcaB06g26976 Brassica carinata HOM05D003137 ORTHO05D003433 2.3e-26 122.5 117 47.9
BcaC02g09490 Brassica carinata HOM05D003137 ORTHO05D003433 2.3e-26 122.5 117 47.9
A04p09900 Brassica napus HOM05D003137 ORTHO05D003433 2.3e-26 122.5 117 47.9
C04p43380 Brassica napus HOM05D003137 ORTHO05D003433 2.3e-26 122.5 117 47.9
BolC4t25916H Brassica oleracea HOM05D003137 ORTHO05D003433 2.3e-26 122.5 117 47.9
BraA04t16653Z Brassica rapa HOM05D003137 ORTHO05D003433 2.3e-26 122.5 117 47.9
Eucgr.K00863 Eucalyptus grandis HOM05D003137 ORTHO05D003433 2.3e-26 122.5 120 48.3
Thhalv10004243m.g Eutrema salsugineum HOM05D003137 ORTHO05D003433 2.3e-26 122.5 117 47.9
Aa31LG5G17560 Aethionema arabicum HOM05D003137 ORTHO05D003433 3.0e-26 122.1 122 47.5
Carub.0007s3147 Capsella rubella HOM05D003137 ORTHO05D003433 3.0e-26 122.1 117 47.9
Cc10_g03200 Coffea canephora HOM05D003137 ORTHO05D003433 3.0e-26 122.1 108 51.9
Rhsim07G0131000 Rhododendron simsii HOM05D003137 ORTHO05D003433 3.0e-26 122.1 108 52.8
Sp7g06520 Schrenkiella parvula HOM05D003137 ORTHO05D003433 3.0e-26 122.1 117 47.9
CARHR216920 Cardamine hirsuta HOM05D003137 ORTHO05D003433 3.9e-26 121.7 117 47.9
FvH4_6g43560 Fragaria vesca HOM05D003137 ORTHO05D003433 3.9e-26 121.7 108 50.9
FAN14G4002 Fragaria x ananassa HOM05D003137 ORTHO05D003433 3.9e-26 121.7 108 50.9
Glyma.12G196001 Glycine max HOM05D003137 ORTHO05D003433 3.9e-26 121.7 122 48.4
QL08p033861 Quercus lobata HOM05D003137 ORTHO05D003433 3.9e-26 121.7 108 52.8
AT5G35730 Arabidopsis thaliana HOM05D003137 ORTHO05D003433 5.0e-26 121.3 117 47.0
COL.COLO4_12992 Corchorus olitorius HOM05D003137 ORTHO05D003433 5.0e-26 121.3 122 47.5
Gohir.D11G088700 Gossypium hirsutum HOM05D003137 ORTHO05D003433 5.0e-26 121.3 108 50.9
Actinidia32508 Actinidia chinensis HOM05D003137 ORTHO05D003433 6.6e-26 120.9 126 47.6
CiPaw.04G118000 Carya illinoinensis HOM05D003137 ORTHO05D003433 6.6e-26 120.9 108 52.8
Migut.C00698 Erythranthe guttata HOM05D003137 ORTHO05D003433 6.6e-26 120.9 122 47.5
Thecc.01G369700 Theobroma cacao HOM05D003137 ORTHO05D003433 6.6e-26 120.9 108 51.9
CSS0047433 Camellia sinensis var. sinensis HOM05D003137 ORTHO05D003433 8.6e-26 120.6 122 47.5
COL.COLO4_12634 Corchorus olitorius HOM05D003137 ORTHO05D003433 8.6e-26 120.6 106 53.8
Glyma.09G263700 Glycine max HOM05D003137 ORTHO05D003433 8.6e-26 120.6 117 48.7
Gorai.007G094800 Gossypium raimondii HOM05D003137 ORTHO05D003433 8.6e-26 120.6 108 50.9
Nn4g22018 Nelumbo nucifera HOM05D003137 ORTHO05D003433 8.6e-26 120.6 122 48.4
Nn7g38434 Nelumbo nucifera HOM05D003137 ORTHO05D003433 8.6e-26 120.6 122 48.4
Sc21g0001670 Simmondsia chinensis HOM05D003137 ORTHO05D003433 8.6e-26 120.6 108 51.9
CAN.G1126.28 Capsicum annuum HOM05D003137 ORTHO05D003433 1.1e-25 120.2 122 48.4
Manes.13G073300 Manihot esculenta HOM05D003137 ORTHO05D003433 1.1e-25 120.2 108 50.9
GSVIVG01030627001 Vitis vinifera HOM05D003137 ORTHO05D003433 1.1e-25 120.2 126 48.4
AUR62035796 Chenopodium quinoa HOM05D003137 ORTHO05D003433 1.5e-25 119.8 124 49.2
Glyma.13G306500 Glycine max HOM05D003137 ORTHO05D003433 1.5e-25 119.8 108 50.9
Lsat_1_v5_gn_8_129381 Lactuca sativa HOM05D003137 ORTHO05D003433 1.5e-25 119.8 122 48.4
PGSC0003DMG402027860 Solanum tuberosum HOM05D003137 ORTHO05D003433 1.5e-25 119.8 106 53.8
Gohir.A12G103350 Gossypium hirsutum HOM05D003137 ORTHO05D003433 1.9e-25 119.4 117 47.0
Gorai.008G116200 Gossypium raimondii HOM05D003137 ORTHO05D003433 1.9e-25 119.4 117 47.0
Os12g0595000 Oryza sativa ssp. japonica HOM05D003137 ORTHO05D003433 1.9e-25 119.4 126 49.2
arahy.Tifrunner.gnm1.ann1.HIPE1N Arachis hypogaea HOM05D003137 ORTHO05D003433 2.5e-25 119.0 116 48.3
arahy.Tifrunner.gnm1.ann1.U40R6G Arachis hypogaea HOM05D003137 ORTHO05D003433 2.5e-25 119.0 116 48.3
Duzib138G0678 Durio zibethinus HOM05D003137 ORTHO05D003433 2.5e-25 119.0 126 47.6
Hma1.2p1_0613F.1_g189210 Hydrangea macrophylla HOM05D003137 ORTHO05D003433 2.5e-25 119.0 119 48.7
Potri.017G039000 Populus trichocarpa HOM05D003137 ORTHO05D003433 2.5e-25 119.0 108 50.9
CSS0004570 Camellia sinensis var. sinensis HOM05D003137 ORTHO05D003433 3.3e-25 118.6 106 50.9
Glyma.18G228400 Glycine max HOM05D003137 ORTHO05D003433 3.3e-25 118.6 106 52.8
Lj3g0011099 Lotus japonicus HOM05D003137 ORTHO05D003433 3.3e-25 118.6 122 49.2
Solyc04g080050.4 Solanum lycopersicum HOM05D003137 ORTHO05D003433 3.3e-25 118.6 106 52.8
Sopen04g033640 Solanum pennellii HOM05D003137 ORTHO05D003433 3.3e-25 118.6 106 52.8
AUR62027561 Chenopodium quinoa HOM05D003137 ORTHO05D003433 4.3e-25 118.2 107 52.3
Duzib133G1508 Durio zibethinus HOM05D003137 ORTHO05D003433 4.3e-25 118.2 108 50.9
Phvul.005G113400 Phaseolus vulgaris HOM05D003137 ORTHO05D003433 4.3e-25 118.2 122 47.5
TWI18G1074 Tripterygium wilfordii HOM05D003137 ORTHO05D003433 4.3e-25 118.2 108 49.1
A03p39250 Brassica napus HOM05D001420 ORTHO05D003433 5.6e-25 117.9 133 48.9
Medtr2g088870 Medicago truncatula HOM05D003137 ORTHO05D003433 5.6e-25 117.9 107 52.3
SGA_v2.0_scaffold24G10245 Striga asiatica HOM05D003137 ORTHO05D003433 5.6e-25 117.9 102 54.9
VMungo1080G0481 Vigna mungo HOM05D003137 ORTHO05D003433 5.6e-25 117.9 121 47.1
MSTRG.25153 Avicennia marina HOM05D003137 ORTHO05D003433 7.3e-25 117.5 129 46.5
Zm00001eb135290 Zea mays HOM05D003137 ORTHO05D003433 7.3e-25 117.5 126 48.4
A01p22150 Brassica napus HOM05D001420 ORTHO05D003433 9.5e-25 117.1 133 48.9
Gohir.A11G084600 Gossypium hirsutum HOM05D003137 ORTHO05D003433 1.2e-24 116.7 108 50.0
Lj8C37T5 Lonicera japonica HOM05D003137 ORTHO05D003433 1.2e-24 116.7 105 52.4
Phvul.008G069800 Phaseolus vulgaris HOM05D003137 ORTHO05D003433 1.2e-24 116.7 107 50.5
EL10Ac8g19786 Beta vulgaris HOM05D003137 ORTHO05D003433 1.6e-24 116.3 108 50.9
TPR.G4191 Trifolium pratense HOM05D003137 ORTHO05D003433 1.6e-24 116.3 107 49.5
HanXRQChr17g0560951 Helianthus annuus HOM05D003137 ORTHO05D003433 2.1e-24 115.9 122 47.5
Nn6g34282 Nelumbo nucifera HOM05D003137 ORTHO05D003433 2.1e-24 115.9 108 51.9
Medtr7g076560 Medicago truncatula HOM05D003137 ORTHO05D003433 2.8e-24 115.5 117 47.0
arahy.Tifrunner.gnm1.ann1.VG7JT5 Arachis hypogaea HOM05D003137 ORTHO05D003433 3.6e-24 115.2 129 45.0
Lj1g0004776 Lotus japonicus HOM05D003137 ORTHO05D003433 3.6e-24 115.2 106 50.9
Lalb_Chr01g0005541 Lupinus albus HOM05D003137 ORTHO05D003433 3.6e-24 115.2 122 47.5
Potri.007G121400 Populus trichocarpa HOM05D003137 ORTHO05D003433 3.6e-24 115.2 108 50.0
Psat3g112160 Pisum sativum HOM05D003137 ORTHO05D003433 4.7e-24 114.8 106 48.1
Prupe.2G153500 Prunus persica HOM05D003137 ORTHO05D003433 4.7e-24 114.8 108 50.9
Ah.09g232930 Amaranthus hybridus HOM05D001132 ORTHO05D003433 6.2e-24 114.4 103 53.4
PSO478G0754 Papaver somniferum HOM05D003137 ORTHO05D003433 6.2e-24 114.4 107 49.5
Aqoxy7G03817 Aquilegia oxysepala HOM05D003137 ORTHO05D003433 1.0e-23 113.6 122 44.3
PSO782G4462 Papaver somniferum HOM05D003137 ORTHO05D003433 1.0e-23 113.6 107 48.6
HPP92_010507 Vanilla planifolia HOM05D003137 ORTHO05D003433 1.4e-23 113.2 122 44.3
Solyc07g022830.3 Solanum lycopersicum HOM05D003137 ORTHO05D003433 1.8e-23 112.8 118 47.5
Lalb_Chr01g0021071 Lupinus albus HOM05D003137 ORTHO05D003433 2.3e-23 112.5 108 47.2
ATR0787G213 Amborella trichopoda HOM05D003137 ORTHO05D003433 5.2e-23 111.3 108 48.1
Sopen07g012160 Solanum pennellii HOM05D003137 ORTHO05D003433 5.2e-23 111.3 118 46.6
VMungo1383G1713 Vigna mungo HOM05D003137 ORTHO05D003433 5.2e-23 111.3 133 43.6
CDE09G0481 Ceratophyllum demersum HOM05D003137 ORTHO05D003433 8.9e-23 110.5 124 45.2
Oeu016738.1 Olea europaea HOM05D003137 ORTHO05D003433 8.9e-23 110.5 122 45.1
Lalb_Chr24g0393061 Lupinus albus HOM05D003137 ORTHO05D003433 1.7e-21 106.3 123 43.9
SHI10274 Sapria himalayana HOM05D003137 ORTHO05D003433 2.2e-21 105.9 103 47.6
Pp3c15_24780 Physcomitrium patens HOM05D003137 ORTHO05D003433 1.4e-20 103.2 118 40.7
FAN08G1693 Fragaria x ananassa HOM05D003137 ORTHO05D003433 2.4e-20 102.4 97 47.4
Pp3c9_25080 Physcomitrium patens HOM05D003137 ORTHO05D003433 2.4e-20 102.4 118 42.4
BolC9t57445H Brassica oleracea HOM05D003137 ORTHO05D003433 5.4e-20 101.3 45 97.8
SEGI_18577 Sequoiadendron giganteum HOM05D003137 ORTHO05D003433 3.5e-19 98.6 109 45.9
BcaC01g01866 Brassica carinata HOM05D003137 ORTHO05D003433 1.1e-17 93.6 81 58.0
TAR365G0865 Trochodendron aralioides HOM05D003137 ORTHO05D003433 1.2e-14 83.6 54 68.5
Gohir.D12G106800 Gossypium hirsutum HOM05D003137 ORTHO05D003433 2.6e-14 82.4 54 63.0
Mapoly0060s0006 Marchantia polymorpha HOM05D003137 ORTHO05D003433 5.8e-14 81.3 118 37.3
Mapoly0008s0085 Marchantia polymorpha HOM05D003137 ORTHO05D003433 1.9e-12 76.3 118 33.1
Hund21479 Selenicereus undatus HOM05D003137 ORTHO05D003433 1.9e-12 76.3 65 47.7
Duzib132G0891 Durio zibethinus HOM05D003137 ORTHO05D003433 7.1e-12 74.3 110 32.7
FAN12G2421 Fragaria x ananassa HOM05D003137 ORTHO05D003433 9.2e-12 73.9 56 58.9
Dinv15027 Davidia involucrata HOM05D003137 ORTHO05D003433 1.6e-11 73.2 87 40.2
Haze_12901 Corylus avellana HOM05D003137 ORTHO05D003433 2.1e-11 72.8 84 42.9
SGA_v2.0_scaffold48G18065 Striga asiatica HOM05D003137 ORTHO05D003433 2.7e-11 72.4 92 41.3
FAN07G0373 Fragaria x ananassa HOM05D003137 ORTHO05D003433 3.5e-11 72.0 57 59.6
Sabra17G0026100 Salix brachista HOM05D003137 ORTHO05D003433 3.5e-11 72.0 92 38.0
Cpa.g.sc8.238 Carica papaya HOM05D003137 ORTHO05D003433 6.0e-11 71.2 105 36.2
DCAR_020205 Daucus carota HOM05D003137 ORTHO05D003433 1.0e-10 70.5 107 36.4
Cfa014440 Carpinus fangiana HOM05D003137 ORTHO05D003433 2.3e-10 69.3 75 42.7
Nitab4.5_0000110g0420 Nicotiana tabacum HOM05D003137 ORTHO05D003433 3.9e-10 68.6 83 42.2
ClCG04G004390 Citrullus lanatus HOM05D003137 ORTHO05D003433 6.6e-10 67.8 71 43.7
arahy.Tifrunner.gnm1.ann1.D87ERS Arachis hypogaea HOM05D003137 ORTHO05D003433 8.6e-10 67.4 87 34.5
Ah.14g086720 Amaranthus hybridus HOM05D003137 ORTHO05D003433 2.5e-09 65.9 88 39.8
MBI13_g32436_MAGBIO Magnolia biondii HOM05D003137 ORTHO05D003433 3.3e-09 65.5 87 37.9
Nitab4.5_0003246g0110 Nicotiana tabacum HOM05D003137 ORTHO05D003433 3.3e-09 65.5 74 43.2
Peaxi162Scf00057g00421 Petunia axillaris HOM05D003137 ORTHO05D003433 4.3e-09 65.1 90 36.7
SalBow6G6965 Salvia bowleyana HOM05D003137 ORTHO05D003433 4.3e-09 65.1 88 37.5
FAN02G1637 Fragaria x ananassa HOM05D003137 ORTHO05D003433 7.3e-09 64.3 97 30.9
CAN.G655.3 Capsicum annuum HOM05D003137 ORTHO05D003433 1.2e-08 63.5 71 40.8
vmacro14192 Vaccinium macrocarpon HOM05D003137 ORTHO05D003433 1.6e-08 63.2 70 40.0
TWI75G1854 Tripterygium wilfordii HOM05D003137 ORTHO05D003433 2.1e-08 62.8 75 38.7
AagrBONN_evm.TU.Sc2ySwM_117.2028 Anthoceros agrestis HOM05D003137 ORTHO05D003433 2.8e-08 62.4 119 28.6
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 2.8e-08 62.4 90 35.6
SalBow7G2186 Salvia bowleyana HOM05D003137 ORTHO05D003433 3.6e-08 62.0 88 36.4
Psat5g265400 Pisum sativum HOM05D003137 ORTHO05D003433 4.7e-08 61.6 113 37.2
PGSC0003DMG400031494 Solanum tuberosum HOM05D003137 ORTHO05D003433 4.7e-08 61.6 71 39.4
RcHm_v2.0_Chr2g0127371 Rosa chinensis HOM05D003137 ORTHO05D003433 3.1e-07 58.9 67 43.3
MBI11_g02542_MAGBIO Magnolia biondii HOM05D003137 ORTHO05D003433 8.9e-07 57.4 109 27.5
A07p21300 Brassica napus HOM05D002159 ORTHO05D007297 2.0e-06 56.2 29 79.3
BraA01t03371Z Brassica rapa HOM05D002159 ORTHO05D007297 2.0e-06 56.2 29 79.3
BraA04t16695Z Brassica rapa HOM05D002159 ORTHO05D007297 2.0e-06 56.2 29 79.3
CBR_g2888 Chara braunii HOM05D000019 ORTHO05D000002 2.0e-06 56.2 83 36.1
RcHm_v2.0_Chr1g0352051 Rosa chinensis HOM05D003137 ORTHO05D003433 3.4e-06 55.5 107 30.8


User provided reference genes

Program Settings