Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p39730 Brassica napus HOM05D003613 ORTHO05D004055 1.7e-105 386.0 188 100.0
BolC8t51544H Brassica oleracea HOM05D003613 ORTHO05D004055 4.0e-46 188.7 95 96.8
BcaC03g17203 Brassica carinata HOM05D003613 ORTHO05D004055 2.0e-45 186.4 95 94.7
BolC2t11219H Brassica oleracea HOM05D003613 ORTHO05D004055 2.0e-45 186.4 95 94.7
BolC2t08604H Brassica oleracea HOM05D003613 ORTHO05D004055 2.2e-44 183.0 95 93.7
BcaC03g14996 Brassica carinata HOM05D003613 ORTHO05D004055 3.2e-35 152.5 81 92.6
C02p25300 Brassica napus HOM05D003613 ORTHO05D004055 4.1e-35 152.1 81 91.4
BolC5t30160H Brassica oleracea HOM05D003613 ORTHO05D004055 2.5e-32 142.9 77 88.3
BcaC05g25604 Brassica carinata HOM05D003613 ORTHO05D004055 1.6e-31 140.2 77 87.0
C05p14290 Brassica napus HOM05D003613 ORTHO05D004055 2.1e-31 139.8 77 87.0
BcaB03g13047 Brassica carinata HOM05D003613 ORTHO05D004055 6.2e-31 138.3 76 90.8
Thhalv10009201m.g Eutrema salsugineum HOM05D003613 ORTHO05D004055 8.1e-31 137.9 77 88.3
Sp1g14410 Schrenkiella parvula HOM05D003613 ORTHO05D004055 1.8e-30 136.7 77 87.0
BcaC07g38803 Brassica carinata HOM05D003613 ORTHO05D004055 2.4e-30 136.3 79 84.8
C08p17390 Brassica napus HOM05D003613 ORTHO05D004055 2.4e-30 136.3 79 84.8
BolC8t49365H Brassica oleracea HOM05D003613 ORTHO05D004055 2.4e-30 136.3 79 84.8
A08p31400 Brassica napus HOM05D003613 ORTHO05D004055 6.8e-30 134.8 82 80.5
BraA08t35063Z Brassica rapa HOM05D003613 ORTHO05D004055 6.8e-30 134.8 82 80.5
BcaB02g06598 Brassica carinata HOM05D003613 ORTHO05D004055 2.0e-29 133.3 78 87.2
CARHR016650 Cardamine hirsuta HOM05D003613 ORTHO05D004055 2.6e-29 132.9 77 84.4
A06p12110 Brassica napus HOM05D003613 ORTHO05D004055 5.8e-29 131.7 78 83.3
BraA06t24380Z Brassica rapa HOM05D003613 ORTHO05D004055 5.8e-29 131.7 78 83.3
Carub.0001s1593 Capsella rubella HOM05D003613 ORTHO05D004055 5.8e-29 131.7 77 81.8
BraA09t41473Z Brassica rapa HOM05D003613 ORTHO05D004055 1.4e-27 127.1 118 60.2
AT1G16170 Arabidopsis thaliana HOM05D003613 ORTHO05D004055 7.1e-27 124.8 80 76.2
AL1G28300 Arabidopsis lyrata HOM05D003613 ORTHO05D004055 1.2e-26 124.0 77 77.9
A09p61000 Brassica napus HOM05D003613 ORTHO05D004055 1.6e-26 123.6 78 79.5
Thhalv10019378m.g Eutrema salsugineum HOM05D003613 ORTHO05D004055 2.1e-26 123.2 77 74.0
C08p44600 Brassica napus HOM05D003613 ORTHO05D004055 2.7e-26 122.9 81 76.5
BolC8t52006H Brassica oleracea HOM05D003613 ORTHO05D004055 2.7e-26 122.9 81 76.5
AL2G40350 Arabidopsis lyrata HOM05D003613 ORTHO05D004055 3.5e-26 122.5 77 72.7
Sp5g34740 Schrenkiella parvula HOM05D003613 ORTHO05D004055 3.5e-26 122.5 77 72.7
Carub.0002s2654 Capsella rubella HOM05D003613 ORTHO05D004055 1.0e-25 120.9 77 71.4
AT1G79660 Arabidopsis thaliana HOM05D003613 ORTHO05D004055 1.7e-25 120.2 77 71.4
BcaB03g14503 Brassica carinata HOM05D003613 ORTHO05D004055 1.7e-25 120.2 78 78.2
Aa31LG4G1310 Aethionema arabicum HOM05D003613 ORTHO05D004055 3.0e-25 119.4 80 67.5
CARHR073400 Cardamine hirsuta HOM05D003613 ORTHO05D004055 3.9e-25 119.0 77 70.1
Aa31LG7G710 Aethionema arabicum HOM05D003613 ORTHO05D004055 8.6e-25 117.9 80 73.8
BolC8t48485H Brassica oleracea HOM05D053536 ORTHO05D016675 2.5e-24 116.3 63 87.3
BcaC08g47525 Brassica carinata HOM05D003613 ORTHO05D004055 5.6e-24 115.2 77 71.4
BolC6t40365H Brassica oleracea HOM05D003613 ORTHO05D004055 5.6e-24 115.2 77 71.4
A07p44660 Brassica napus HOM05D003613 ORTHO05D004055 2.1e-23 113.2 77 70.1
BraA07t31975Z Brassica rapa HOM05D003613 ORTHO05D004055 2.1e-23 113.2 77 70.1
C06p37910 Brassica napus HOM05D053536 ORTHO05D016675 6.2e-23 111.7 74 75.7
BolC9t56627H Brassica oleracea HOM05D000598 ORTHO05D016675 1.1e-22 110.9 62 80.6
BcaC08g47524 Brassica carinata HOM05D003613 ORTHO05D004055 1.4e-22 110.5 77 67.5
THA.LOC104813597 Tarenaya hassleriana HOM05D003613 ORTHO05D004055 1.3e-20 104.0 80 65.0
BolC4t26296H Brassica oleracea HOM05D000008 ORTHO05D000005 2.9e-20 102.8 53 90.6
C02p24450 Brassica napus HOM05D001250 ORTHO05D000627 1.9e-19 100.1 148 45.3
C07p59130 Brassica napus HOM05D002754 ORTHO05D003271 9.3e-19 97.8 48 91.7
Cpa.g.sc68.45 Carica papaya HOM05D003613 ORTHO05D004055 3.5e-18 95.9 77 63.6
Thecc.06G133700 Theobroma cacao HOM05D003613 ORTHO05D004055 3.5e-18 95.9 76 65.8
TWI75G1756 Tripterygium wilfordii HOM05D003613 ORTHO05D004055 6.6e-17 91.7 77 63.6
Atru.chr1.2819 Acer truncatum HOM05D003613 ORTHO05D004055 1.1e-16 90.9 79 59.5
ClCG09G003430 Citrullus lanatus HOM05D003613 ORTHO05D004055 1.1e-16 90.9 82 58.5
MELO3C029246.2 Cucumis melo HOM05D003613 ORTHO05D004055 1.1e-16 90.9 81 60.5
CsaV3_7G031790 Cucumis sativus L. HOM05D003613 ORTHO05D004055 1.5e-16 90.5 81 60.5
Manes.11G070600 Manihot esculenta HOM05D003613 ORTHO05D004055 2.5e-16 89.7 82 58.5
FAN14G0884 Fragaria x ananassa HOM05D008004 ORTHO05D004055 3.3e-16 89.4 78 59.0
COL.COLO4_30901 Corchorus olitorius HOM05D003613 ORTHO05D004055 4.3e-16 89.0 76 59.2
MELO3C024884.2 Cucumis melo HOM05D003613 ORTHO05D004055 5.6e-16 88.6 77 58.4
CsaV3_3G032670 Cucumis sativus L. HOM05D003613 ORTHO05D004055 5.6e-16 88.6 77 58.4
Manes.04G099000 Manihot esculenta HOM05D003613 ORTHO05D004055 5.6e-16 88.6 78 59.0
Dinv21437 Davidia involucrata HOM05D003613 ORTHO05D004055 7.3e-16 88.2 84 59.5
Gohir.D06G146000 Gossypium hirsutum HOM05D003613 ORTHO05D004055 7.3e-16 88.2 76 63.2
Gorai.010G170200 Gossypium raimondii HOM05D003613 ORTHO05D004055 7.3e-16 88.2 76 63.2
Nitab4.5_0005437g0020 Nicotiana tabacum HOM05D003613 ORTHO05D004055 7.3e-16 88.2 91 56.0
RcHm_v2.0_Chr2g0131951 Rosa chinensis HOM05D003613 ORTHO05D004055 7.3e-16 88.2 77 59.7
Actinidia36859 Actinidia chinensis HOM05D000338 ORTHO05D003721 9.6e-16 87.8 91 54.9
ClCG10G012830 Citrullus lanatus HOM05D003613 ORTHO05D004055 9.6e-16 87.8 77 58.4
TWI31G1088 Tripterygium wilfordii HOM05D003613 ORTHO05D004055 9.6e-16 87.8 77 61.0
Potri.001G040300 Populus trichocarpa HOM05D003613 ORTHO05D004055 1.3e-15 87.4 82 57.3
Gohir.A10G049000 Gossypium hirsutum HOM05D003613 ORTHO05D004055 1.6e-15 87.0 76 63.2
Gohir.D10G049600 Gossypium hirsutum HOM05D003613 ORTHO05D004055 1.6e-15 87.0 76 63.2
Gorai.011G053100 Gossypium raimondii HOM05D003613 ORTHO05D004055 1.6e-15 87.0 76 63.2
Lsat_1_v5_gn_4_84900 Lactuca sativa HOM05D003613 ORTHO05D004055 1.6e-15 87.0 89 57.3
Lsat_1_v5_gn_5_9061 Lactuca sativa HOM05D003613 ORTHO05D004055 1.6e-15 87.0 94 53.2
Duzib192G0866 Durio zibethinus HOM05D003613 ORTHO05D004055 2.1e-15 86.7 76 60.5
Eucgr.F03989 Eucalyptus grandis HOM05D003613 ORTHO05D004055 2.1e-15 86.7 81 58.0
Gohir.A06G141700 Gossypium hirsutum HOM05D003613 ORTHO05D004055 3.6e-15 85.9 76 61.8
HanXRQChr05g0157501 Helianthus annuus HOM05D003613 ORTHO05D004055 3.6e-15 85.9 84 57.1
Sabra03G0136400 Salix brachista HOM05D003613 ORTHO05D004055 3.6e-15 85.9 82 54.9
Duzib235G1294 Durio zibethinus HOM05D003613 ORTHO05D004055 6.2e-15 85.1 76 60.5
Prupe.3G105500 Prunus persica HOM05D003613 ORTHO05D004055 6.2e-15 85.1 77 59.7
HanXRQChr04g0100011 Helianthus annuus HOM05D003613 ORTHO05D004055 8.1e-15 84.7 84 56.0
MD09G1229400 Malus domestica HOM05D003613 ORTHO05D004055 8.1e-15 84.7 82 56.1
Potri.001G038200 Populus trichocarpa HOM05D003613 ORTHO05D004055 8.1e-15 84.7 82 54.9
Potri.001G038750 Populus trichocarpa HOM05D003613 ORTHO05D004055 8.1e-15 84.7 82 54.9
SGA_v2.0_scaffold515G52657 Striga asiatica HOM05D003613 ORTHO05D004055 1.1e-14 84.3 86 58.1
FvH4_6g28090 Fragaria vesca HOM05D008004 ORTHO05D011218 1.4e-14 84.0 73 60.3
FAN02G4453 Fragaria x ananassa HOM05D003613 ORTHO05D004055 1.4e-14 84.0 79 57.0
Lalb_Chr19g0125611 Lupinus albus HOM05D003613 ORTHO05D004055 1.8e-14 83.6 77 61.0
Rhsim12G0183300 Rhododendron simsii HOM05D003613 ORTHO05D004055 1.8e-14 83.6 85 55.3
MSTRG.22838 Avicennia marina HOM05D003613 ORTHO05D004055 2.4e-14 83.2 88 54.5
ECA232G3259 Erigeron canadensis HOM05D003613 ORTHO05D004055 2.4e-14 83.2 84 58.3
Potri.003G186400 Populus trichocarpa HOM05D003613 ORTHO05D004055 2.4e-14 83.2 77 55.8
Sed0006875 Sechium edule HOM05D003613 ORTHO05D004055 2.4e-14 83.2 79 57.0
ECA246G2284 Erigeron canadensis HOM05D003613 ORTHO05D004055 4.0e-14 82.4 84 57.1
MD17G1228300 Malus domestica HOM05D003613 ORTHO05D004055 4.0e-14 82.4 77 57.1
SGA_v2.0_scaffold74G24606 Striga asiatica HOM05D003613 ORTHO05D004055 5.3e-14 82.0 86 55.8
ECA247G1662 Erigeron canadensis HOM05D003613 ORTHO05D004055 6.9e-14 81.6 83 55.4
Sabra03G0136500 Salix brachista HOM05D003613 ORTHO05D004055 6.9e-14 81.6 82 51.2
Sed0012530 Sechium edule HOM05D003613 ORTHO05D004055 6.9e-14 81.6 74 58.1
Sed0021976 Sechium edule HOM05D003613 ORTHO05D004055 6.9e-14 81.6 82 54.9
Ciclev10026842m.g Citrus clementina HOM05D003613 ORTHO05D004055 1.2e-13 80.9 77 55.8
CAN.G1008.14 Capsicum annuum HOM05D003613 ORTHO05D004055 1.5e-13 80.5 85 55.3
CiPaw.01G052100 Carya illinoinensis HOM05D003613 ORTHO05D004055 1.5e-13 80.5 77 58.4
VMungo0540G1949 Vigna mungo HOM05D003613 ORTHO05D004055 1.5e-13 80.5 79 54.4
Cfa004173 Carpinus fangiana HOM05D003613 ORTHO05D004055 2.0e-13 80.1 82 53.7
Nn8g40130 Nelumbo nucifera HOM05D003613 ORTHO05D004055 2.0e-13 80.1 84 58.3
Sopen03g036670 Solanum pennellii HOM05D003613 ORTHO05D004055 2.0e-13 80.1 86 55.8
MSTRG.9389 Avicennia marina HOM05D003613 ORTHO05D004055 2.6e-13 79.7 88 54.5
PGSC0003DMG400014217 Solanum tuberosum HOM05D003613 ORTHO05D004055 2.6e-13 79.7 86 54.7
Nitab4.5_0002700g0020 Nicotiana tabacum HOM05D003613 ORTHO05D004055 3.4e-13 79.3 63 66.7
vmacro19080 Vaccinium macrocarpon HOM05D003613 ORTHO05D004055 4.5e-13 79.0 87 54.0
GSVIVG01016088001 Vitis vinifera HOM05D003613 ORTHO05D004055 4.5e-13 79.0 76 59.2
Oeu033454.1 Olea europaea HOM05D003613 ORTHO05D004055 5.8e-13 78.6 84 54.8
Rhsim08G0202400 Rhododendron simsii HOM05D003613 ORTHO05D004055 5.8e-13 78.6 87 51.7
CSS0042010 Camellia sinensis var. sinensis HOM05D003613 ORTHO05D004055 7.6e-13 78.2 89 51.7
Glyma.15G063700 Glycine max HOM05D003613 ORTHO05D004055 7.6e-13 78.2 79 53.2
Duzib160G0323 Durio zibethinus HOM05D003613 ORTHO05D004055 9.9e-13 77.8 76 57.9
Phvul.006G195900 Phaseolus vulgaris HOM05D003613 ORTHO05D004055 9.9e-13 77.8 76 55.3
Oeu051549.1 Olea europaea HOM05D003613 ORTHO05D004055 1.3e-12 77.4 85 54.1
TAR383G0763 Trochodendron aralioides HOM05D003613 ORTHO05D004055 1.3e-12 77.4 94 51.1
Glyma.13G250700 Glycine max HOM05D003613 ORTHO05D004055 1.7e-12 77.0 76 55.3
Lalb_Chr16g0383261 Lupinus albus HOM05D003613 ORTHO05D004055 1.7e-12 77.0 77 54.5
Cc04_g05380 Coffea canephora HOM05D003613 ORTHO05D004055 2.2e-12 76.6 83 55.4
CSS0016880 Camellia sinensis var. sinensis HOM05D003613 ORTHO05D004055 2.9e-12 76.3 78 56.4
Haze_15237 Corylus avellana HOM05D003613 ORTHO05D004055 2.9e-12 76.3 77 54.5
Lj6g0025627 Lotus japonicus HOM05D003613 ORTHO05D004055 3.8e-12 75.9 76 55.3
Solyc12g042540.1 Solanum lycopersicum HOM05D003613 ORTHO05D004055 4.9e-12 75.5 86 53.5
Gohir.D09G076100 Gossypium hirsutum HOM05D003613 ORTHO05D004055 6.4e-12 75.1 77 50.6
QL12p003368 Quercus lobata HOM05D003613 ORTHO05D004055 8.4e-12 74.7 76 57.9
Sopen12g021630 Solanum pennellii HOM05D003613 ORTHO05D004055 8.4e-12 74.7 86 51.2
MSTRG.11218 Avicennia marina HOM05D003613 ORTHO05D004055 1.1e-11 74.3 85 50.6
Haze_16413 Corylus avellana HOM05D003613 ORTHO05D004055 1.1e-11 74.3 77 53.2
Haze_16416 Corylus avellana HOM05D003613 ORTHO05D004055 1.1e-11 74.3 77 53.2
SalBow1G4637 Salvia bowleyana HOM05D003613 ORTHO05D004055 1.1e-11 74.3 85 49.4
PGSC0003DMG400014438 Solanum tuberosum HOM05D003613 ORTHO05D004055 1.1e-11 74.3 86 53.5
arahy.Tifrunner.gnm1.ann1.DB50AT Arachis hypogaea HOM05D003613 ORTHO05D004055 1.4e-11 73.9 85 48.2
DCAR_025611 Daucus carota HOM05D003613 ORTHO05D004055 1.4e-11 73.9 83 48.2
QL10p043081 Quercus lobata HOM05D003613 ORTHO05D004055 1.4e-11 73.9 76 56.6
arahy.Tifrunner.gnm1.ann1.M9YY7V Arachis hypogaea HOM05D003613 ORTHO05D004055 1.9e-11 73.6 85 49.4
Gorai.006G091300 Gossypium raimondii HOM05D003613 ORTHO05D004055 1.9e-11 73.6 77 50.6
Lalb_Chr09g0327111 Lupinus albus HOM05D003613 ORTHO05D004055 1.9e-11 73.6 78 53.8
SHI11349 Sapria himalayana HOM05D003613 ORTHO05D004055 2.4e-11 73.2 75 49.3
Peaxi162Scf00195g00118 Petunia axillaris HOM05D003613 ORTHO05D004055 3.2e-11 72.8 67 59.7
Aqoxy5G00706 Aquilegia oxysepala HOM05D003613 ORTHO05D004055 4.2e-11 72.4 84 51.2
Glyma.01G154800 Glycine max HOM05D003613 ORTHO05D004055 4.2e-11 72.4 75 50.7
Phvul.002G218400 Phaseolus vulgaris HOM05D003613 ORTHO05D004055 4.2e-11 72.4 82 47.6
Nn2g12477 Nelumbo nucifera HOM05D003613 ORTHO05D004055 9.3e-11 71.2 88 53.4
TPR.G32634 Trifolium pratense HOM05D003613 ORTHO05D004055 9.3e-11 71.2 77 50.6
TAR626G0045 Trochodendron aralioides HOM05D003147 ORTHO05D004055 9.3e-11 71.2 75 61.3
MBI14_g16433_MAGBIO Magnolia biondii HOM05D003613 ORTHO05D004055 1.2e-10 70.9 81 49.4
Lalb_Chr20g0122601 Lupinus albus HOM05D003613 ORTHO05D004055 1.6e-10 70.5 76 55.3
Gohir.A09G076160 Gossypium hirsutum HOM05D003613 ORTHO05D004055 2.1e-10 70.1 77 46.8
Os08g0266200 Oryza sativa ssp. japonica HOM05D003613 ORTHO05D004055 2.1e-10 70.1 84 47.6
unitig_22.g6276 Utricularia gibba HOM05D003613 ORTHO05D004055 2.1e-10 70.1 88 45.5
Psat1g210880 Pisum sativum HOM05D003613 ORTHO05D004055 2.7e-10 69.7 76 51.3
Migut.I00632 Erythranthe guttata HOM05D003613 ORTHO05D004055 3.5e-10 69.3 93 46.2
Medtr2g010880 Medicago truncatula HOM05D003613 ORTHO05D004055 3.5e-10 69.3 75 50.7
Ah.12g055300 Amaranthus hybridus HOM05D003613 ORTHO05D004055 4.6e-10 68.9 82 48.8
Potri.001G039700 Populus trichocarpa HOM05D003613 ORTHO05D004055 4.6e-10 68.9 59 59.3
Migut.D01149 Erythranthe guttata HOM05D003613 ORTHO05D004055 6.0e-10 68.6 84 50.0
Glyma.15G176700 Glycine max HOM05D003613 ORTHO05D004055 7.9e-10 68.2 76 48.7
unitig_8.g3041 Utricularia gibba HOM05D003613 ORTHO05D004055 1.0e-09 67.8 88 44.3
Zm00001eb412000 Zea mays HOM05D003613 ORTHO05D004055 2.3e-09 66.6 82 50.0
Ca_00210_v3 Cicer arietinum L. HOM05D003613 ORTHO05D004055 3.0e-09 66.2 77 51.9
Lj4g0025384 Lotus japonicus HOM05D003613 ORTHO05D004055 3.9e-09 65.9 78 50.0
Zm00001eb177920 Zea mays HOM05D003613 ORTHO05D004055 3.9e-09 65.9 77 54.5
EL10Ac5g12047 Beta vulgaris HOM05D003613 ORTHO05D004055 1.1e-08 64.3 73 50.7
BraA07t30345Z Brassica rapa HOM05D003613 ORTHO05D004055 1.5e-08 63.9 39 71.8
C06p29730 Brassica napus HOM05D003613 ORTHO05D004055 2.5e-08 63.2 37 75.7
Ca_18450_v3 Cicer arietinum L. HOM05D003613 ORTHO05D004055 2.5e-08 63.2 76 48.7
Glyma.08G062200 Glycine max HOM05D003613 ORTHO05D004055 3.3e-08 62.8 74 50.0
MBI15_g26076_MAGBIO Magnolia biondii HOM05D003613 ORTHO05D004055 5.6e-08 62.0 55 56.4
arahy.Tifrunner.gnm1.ann1.T22GZM Arachis hypogaea HOM05D003613 ORTHO05D004055 7.4e-08 61.6 52 63.5
arahy.Tifrunner.gnm1.ann1.XPM13Z Arachis hypogaea HOM05D003613 ORTHO05D004055 7.4e-08 61.6 52 63.5
AUR62018676 Chenopodium quinoa HOM05D003613 ORTHO05D004055 7.4e-08 61.6 81 44.4
DCAR_021377 Daucus carota HOM05D003613 ORTHO05D004055 1.3e-07 60.8 69 47.8
ATR0580G444 Amborella trichopoda HOM05D003613 ORTHO05D004055 2.1e-07 60.1 84 47.6
Glyma.07G187000 Glycine max HOM05D003613 ORTHO05D004055 2.1e-07 60.1 72 50.0
SEGI_37804 Sequoiadendron giganteum HOM05D003613 ORTHO05D004055 2.1e-07 60.1 78 44.9
ATR0068G040 Amborella trichopoda HOM05D003613 ORTHO05D004055 1.1e-06 57.8 84 46.4
DCAR_021376 Daucus carota HOM05D003613 ORTHO05D004055 1.4e-06 57.4 81 44.4
TPR.G13916 Trifolium pratense HOM05D003613 ORTHO05D004055 4.0e-06 55.8 64 46.9


User provided reference genes

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