Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p39400 Brassica napus HOM05D005503 ORTHO05D007451 2.1e-149 532.3 266 100.0
BcaC07g40948 Brassica carinata HOM05D005503 ORTHO05D007451 7.9e-141 503.8 277 93.5
BolC8t51514H Brassica oleracea HOM05D005503 ORTHO05D007451 7.9e-141 503.8 277 93.5
A09p56430 Brassica napus HOM05D005503 ORTHO05D007451 1.9e-134 482.6 277 87.4
BraA09t41037Z Brassica rapa HOM05D005503 ORTHO05D007451 1.9e-134 482.6 277 87.4
C08p39580 Brassica napus HOM05D005503 ORTHO05D007451 7.2e-134 480.7 277 87.7
A09p56630 Brassica napus HOM05D005503 ORTHO05D007451 1.4e-132 476.5 274 86.9
BraA09t41054Z Brassica rapa HOM05D005503 ORTHO05D007451 1.4e-132 476.5 274 86.9
BcaC07g40964 Brassica carinata HOM05D005503 ORTHO05D007451 6.7e-132 474.2 277 86.6
BcaC02g08721 Brassica carinata HOM05D005503 ORTHO05D007451 2.7e-117 425.6 284 76.1
C04p51340 Brassica napus HOM05D005503 ORTHO05D007451 6.1e-117 424.5 284 76.8
BolC4t26724H Brassica oleracea HOM05D005503 ORTHO05D007451 8.0e-117 424.1 286 75.9
Sp6g38750 Schrenkiella parvula HOM05D005503 ORTHO05D007451 5.4e-113 411.4 269 78.1
Thhalv10027188m.g Eutrema salsugineum HOM05D005503 ORTHO05D007451 3.7e-98 362.1 278 68.3
Thhalv10015674m.g Eutrema salsugineum HOM05D005503 ORTHO05D007451 5.9e-96 354.8 292 66.1
BolC8t51531H Brassica oleracea HOM05D005503 ORTHO05D007451 1.7e-95 353.2 210 86.2
Thhalv10027472m.g Eutrema salsugineum HOM05D005503 ORTHO05D007451 3.3e-94 349.0 278 67.3
BraA10t45255Z Brassica rapa HOM05D005503 ORTHO05D008949 2.1e-93 346.3 272 67.3
C09p72840 Brassica napus HOM05D005503 ORTHO05D008949 2.0e-91 339.7 270 67.4
Thhalv10015413m.g Eutrema salsugineum HOM05D005503 ORTHO05D007451 3.4e-91 339.0 292 63.0
BolC9t60020H Brassica oleracea HOM05D005503 ORTHO05D008949 4.4e-91 338.6 272 68.4
A10p32120 Brassica napus HOM05D005503 ORTHO05D008949 9.8e-91 337.4 272 66.5
Thhalv10023018m.g Eutrema salsugineum HOM05D005503 ORTHO05D007451 1.9e-86 323.2 247 69.2
BcaC06g32102 Brassica carinata HOM05D005503 ORTHO05D008949 3.4e-83 312.4 272 63.6
AL6G13600 Arabidopsis lyrata HOM05D005503 ORTHO05D007451 1.4e-65 253.8 285 50.9
AT5G04010 Arabidopsis thaliana HOM05D005503 ORTHO05D007451 2.1e-64 250.0 250 53.2
Carub.0006s0294 Capsella rubella HOM05D005503 ORTHO05D007451 3.3e-62 242.7 284 48.9
CARHR209270 Cardamine hirsuta HOM05D005503 ORTHO05D007451 9.6e-62 241.1 250 50.8
Aa31LG6G5380 Aethionema arabicum HOM05D005503 ORTHO05D007451 2.4e-49 199.9 266 45.9
THA.LOC104816403 Tarenaya hassleriana HOM05D007529 ORTHO05D007451 8.2e-29 131.7 292 35.6
Aa31LG6G5360 Aethionema arabicum HOM05D005503 ORTHO05D007451 5.9e-27 125.6 280 35.7
Lalb_Chr02g0156441 Lupinus albus HOM05D007529 ORTHO05D007451 1.1e-22 111.3 258 30.2
CANSAT80G2089 Cannabis sativa HOM05D007529 ORTHO05D007451 2.2e-21 107.1 243 32.5
Atru.chr1.1251 Acer truncatum HOM05D007529 ORTHO05D007451 1.1e-20 104.8 252 32.1
Nn2g15054 Nelumbo nucifera HOM05D007529 ORTHO05D007451 1.1e-20 104.8 249 32.5
CANSAT80G1192 Cannabis sativa HOM05D007529 ORTHO05D007451 1.8e-20 104.0 243 32.1
THA.LOC104825175 Tarenaya hassleriana HOM05D007529 ORTHO05D007451 1.5e-19 100.9 236 31.8
Prupe.7G049500 Prunus persica HOM05D007529 ORTHO05D007451 2.6e-19 100.1 246 29.3
QL07p004579 Quercus lobata HOM05D007529 ORTHO05D007451 4.5e-19 99.4 250 30.4
TWI74G0965 Tripterygium wilfordii HOM05D007529 ORTHO05D007451 2.2e-18 97.1 253 30.8
Gohir.D01G183900 Gossypium hirsutum HOM05D007529 ORTHO05D007451 1.4e-17 94.4 240 28.8
MBI19_g17527_MAGBIO Magnolia biondii HOM05D007529 ORTHO05D007451 1.4e-17 94.4 246 30.9
Ca_23805_v3 Cicer arietinum L. HOM05D007529 ORTHO05D007451 1.9e-17 94.0 251 30.7
Glyma.02G191900 Glycine max HOM05D007529 ORTHO05D007451 4.2e-17 92.8 248 27.8
Sed0023165 Sechium edule HOM05D007529 ORTHO05D007451 4.2e-17 92.8 261 26.8
Sc19g0008410 Simmondsia chinensis HOM05D007529 ORTHO05D007451 5.5e-17 92.4 257 29.6
TPR.G19652 Trifolium pratense HOM05D007529 ORTHO05D007451 5.5e-17 92.4 271 31.4
Dinv30288 Davidia involucrata HOM05D007529 ORTHO05D007451 7.2e-17 92.0 245 27.8
MD14G1081300 Malus domestica HOM05D007529 ORTHO05D007451 9.4e-17 91.7 243 29.6
Medtr1g041810 Medicago truncatula HOM05D007529 ORTHO05D007451 9.4e-17 91.7 253 30.0
PGR142G2784 Punica granatum HOM05D007529 ORTHO05D007451 1.2e-16 91.3 258 29.1
VMungo0720G2145 Vigna mungo HOM05D007529 ORTHO05D007451 1.6e-16 90.9 243 29.6
Gorai.002G227400 Gossypium raimondii HOM05D007529 ORTHO05D007451 2.1e-16 90.5 240 28.3
Phvul.007G249000 Phaseolus vulgaris HOM05D007529 ORTHO05D007451 2.7e-16 90.1 183 32.2
Ah.13g076730 Amaranthus hybridus HOM05D007529 ORTHO05D007451 3.6e-16 89.7 250 28.4
Gohir.A01G193700 Gossypium hirsutum HOM05D007529 ORTHO05D007451 3.6e-16 89.7 240 28.3
Lsat_1_v5_gn_5_161020 Lactuca sativa HOM05D007529 ORTHO05D007451 6.1e-16 89.0 246 30.5
RcHm_v2.0_Chr3g0484581 Rosa chinensis HOM05D007529 ORTHO05D007451 1.0e-15 88.2 241 27.8
Potri.006G044801 Populus trichocarpa HOM05D007529 ORTHO05D007451 1.4e-15 87.8 253 28.5
Nitab4.5_0011420g0010 Nicotiana tabacum HOM05D007529 ORTHO05D007451 1.8e-15 87.4 258 28.3
Potri.004G076800 Populus trichocarpa HOM05D007529 ORTHO05D007451 2.3e-15 87.0 264 26.5
Migut.K00115 Erythranthe guttata HOM05D007529 ORTHO05D007451 3.9e-15 86.3 249 29.3
FAN22G0851 Fragaria x ananassa HOM05D007529 ORTHO05D007451 3.9e-15 86.3 179 33.0
AT5G03920 Arabidopsis thaliana HOM05D021302 ORTHO05D021386 5.2e-15 85.9 146 41.1
Nitab4.5_0001618g0110 Nicotiana tabacum HOM05D007529 ORTHO05D007451 5.2e-15 85.9 248 28.6
arahy.Tifrunner.gnm1.ann1.5P9T4R Arachis hypogaea HOM05D007529 ORTHO05D007451 1.1e-14 84.7 127 37.8
Sabra06G0031000 Salix brachista HOM05D005255 ORTHO05D006276 1.1e-14 84.7 242 26.9
Eucgr.K01581 Eucalyptus grandis HOM05D007529 ORTHO05D007451 1.5e-14 84.3 185 33.0
ECA248G1753 Erigeron canadensis HOM05D007529 ORTHO05D007451 2.0e-14 84.0 246 28.5
COL.COLO4_30902 Corchorus olitorius HOM05D007529 ORTHO05D007451 5.7e-14 82.4 254 26.8
CsaV3_4G021910 Cucumis sativus L. HOM05D007529 ORTHO05D007451 7.4e-14 82.0 273 26.7
EL10Ac3g07171 Beta vulgaris HOM05D007529 ORTHO05D007451 1.3e-13 81.3 257 26.5
ClCG04G003960 Citrullus lanatus HOM05D007529 ORTHO05D007451 1.3e-13 81.3 269 27.5
FvH4_6g24810 Fragaria vesca HOM05D007529 ORTHO05D007451 1.7e-13 80.9 247 27.1
FAN07G2804 Fragaria x ananassa HOM05D007529 ORTHO05D007451 2.8e-13 80.1 179 30.7
HPP92_011341 Vanilla planifolia HOM05D007529 ORTHO05D007451 2.8e-13 80.1 252 28.6
FAN22G0252 Fragaria x ananassa HOM05D007529 ORTHO05D007451 6.3e-13 79.0 179 29.6
FvH4_4g15570 Fragaria vesca HOM05D007529 ORTHO05D007451 8.2e-13 78.6 179 29.1
Manes.09G016732 Manihot esculenta HOM05D007529 ORTHO05D007451 1.4e-12 77.8 251 28.3
AL6G13530 Arabidopsis lyrata HOM05D021302 ORTHO05D021386 1.8e-12 77.4 160 33.8
AUR62030393 Chenopodium quinoa HOM05D007529 ORTHO05D007451 1.8e-12 77.4 251 25.5
FvH4_4g15460 Fragaria vesca HOM05D007529 ORTHO05D007451 1.8e-12 77.4 178 28.1
Solyc04g017670.3 Solanum lycopersicum HOM05D007529 ORTHO05D007451 1.8e-12 77.4 266 27.1
Manes.09G016600 Manihot esculenta HOM05D007529 ORTHO05D007451 2.4e-12 77.0 251 28.3
FAN14G0143 Fragaria x ananassa HOM05D007529 ORTHO05D007451 3.1e-12 76.6 179 30.7
FAN12G3128 Fragaria x ananassa HOM05D007529 ORTHO05D007451 4.1e-12 76.3 178 28.1
Peaxi162Scf00130g00112 Petunia axillaris HOM05D007529 ORTHO05D007451 4.1e-12 76.3 242 26.9
PSO384G2280 Papaver somniferum HOM05D007529 ORTHO05D007451 5.3e-12 75.9 267 27.0
FAN17G0712 Fragaria x ananassa HOM05D007529 ORTHO05D007451 1.2e-11 74.7 179 29.6
Sopen04g008750 Solanum pennellii HOM05D007529 ORTHO05D007451 1.2e-11 74.7 267 26.6
Actinidia38146 Actinidia chinensis HOM05D000001 ORTHO05D009995 1.6e-11 74.3 243 28.4
Haze_19755 Corylus avellana HOM05D007529 ORTHO05D007451 2.6e-11 73.6 182 28.6
HanXRQChr17g0545881 Helianthus annuus HOM05D007529 ORTHO05D007451 2.6e-11 73.6 250 25.6
MELO3C014209.2 Cucumis melo HOM05D007529 ORTHO05D007451 5.9e-11 72.4 209 26.8
Carub.0006s0288 Capsella rubella HOM05D021302 ORTHO05D021386 7.7e-11 72.0 151 35.8
AL6G13510 Arabidopsis lyrata HOM05D021302 ORTHO05D021386 1.0e-10 71.6 132 37.1
Cfa016748 Carpinus fangiana HOM05D002613 ORTHO05D003140 1.3e-10 71.2 182 29.1
Psat6g093280 Pisum sativum HOM05D007529 ORTHO05D007451 1.7e-10 70.9 111 37.8
HPP92_011264 Vanilla planifolia HOM05D007529 ORTHO05D007451 1.7e-10 70.9 158 31.6
HanXRQChr01g0008291 Helianthus annuus HOM05D007529 ORTHO05D007451 3.8e-10 69.7 247 26.3
Nitab4.5_0005195g0010 Nicotiana tabacum HOM05D007529 ORTHO05D007451 1.5e-09 67.8 254 26.0
Cc06_g18420 Coffea canephora HOM05D007529 ORTHO05D007451 3.2e-09 66.6 251 25.9
SGA_v2.0_scaffold21G09330 Striga asiatica HOM05D007529 ORTHO05D007451 7.2e-09 65.5 256 26.6
AT5G03930 Arabidopsis thaliana HOM05D021302 ORTHO05D021386 9.4e-09 65.1 158 31.6
Zm00001eb150670 Zea mays HOM05D007529 ORTHO05D007451 3.0e-07 60.1 46 54.3
Os01g0800900 Oryza sativa ssp. japonica HOM05D007529 ORTHO05D007451 2.6e-06 57.0 266 24.8
unitig_899.g15088 Utricularia gibba HOM05D007529 ORTHO05D007451 7.5e-06 55.5 190 27.4


User provided reference genes

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