Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p39290 Brassica napus HOM05D003702 ORTHO05D014526 2.3e-108 395.6 198 100.0
C07p19070 Brassica napus HOM05D003702 ORTHO05D014526 1.2e-90 336.7 215 81.4
BolC4t27595H Brassica oleracea HOM05D003702 ORTHO05D014526 3.4e-88 328.6 165 99.4
BolC3t21317H Brassica oleracea HOM05D003702 ORTHO05D014526 3.2e-86 322.0 165 98.2
BolC7t42416H Brassica oleracea HOM05D003702 ORTHO05D014526 5.3e-81 304.7 197 80.7
C05p31130 Brassica napus HOM05D003702 ORTHO05D014526 6.9e-81 304.3 191 81.2
BcaC01g03963 Brassica carinata HOM05D003702 ORTHO05D014526 3.8e-79 298.5 148 99.3
BolC5t33656H Brassica oleracea HOM05D003702 ORTHO05D014526 6.4e-71 271.2 177 78.5
BcaC07g40935 Brassica carinata HOM05D003702 ORTHO05D014526 6.1e-45 184.9 91 97.8
C04p61090 Brassica napus HOM05D038349 ORTHO05D014526 7.7e-40 167.9 124 71.0
C03p89980 Brassica napus HOM05D038349 ORTHO05D014526 7.2e-38 161.4 124 69.4
Carub.0001s1487 Capsella rubella HOM05D003702 ORTHO05D004653 7.0e-25 118.2 103 62.1
Sp1g13450 Schrenkiella parvula HOM05D003702 ORTHO05D004653 9.1e-25 117.9 103 62.1
AT1G15110 Arabidopsis thaliana HOM05D003702 ORTHO05D004653 1.2e-24 117.5 103 62.1
AL1G27170 Arabidopsis lyrata HOM05D003702 ORTHO05D004653 1.6e-24 117.1 103 61.2
BcaB02g06576 Brassica carinata HOM05D003702 ORTHO05D004653 1.6e-24 117.1 103 62.1
BcaC05g25442 Brassica carinata HOM05D003702 ORTHO05D004653 1.6e-24 117.1 103 62.1
A06p11110 Brassica napus HOM05D003702 ORTHO05D004653 1.6e-24 117.1 103 62.1
C05p13230 Brassica napus HOM05D003702 ORTHO05D004653 1.6e-24 117.1 103 62.1
BolC5t30060H Brassica oleracea HOM05D003702 ORTHO05D004653 1.6e-24 117.1 103 62.1
BraA06t24290Z Brassica rapa HOM05D003702 ORTHO05D004653 1.6e-24 117.1 103 62.1
CARHR015630 Cardamine hirsuta HOM05D003702 ORTHO05D004653 2.0e-24 116.7 103 61.2
Thhalv10007726m.g Eutrema salsugineum HOM05D003702 ORTHO05D004653 2.0e-24 116.7 103 61.2
PGR102G2387 Punica granatum HOM05D003702 ORTHO05D004653 2.7e-24 116.3 103 58.3
BcaB03g14561 Brassica carinata HOM05D003702 ORTHO05D004653 4.5e-24 115.5 72 76.4
BcaNung05515 Brassica carinata HOM05D003702 ORTHO05D004653 4.5e-24 115.5 72 76.4
A09p61570 Brassica napus HOM05D003702 ORTHO05D004653 4.5e-24 115.5 72 76.4
C08p45160 Brassica napus HOM05D003702 ORTHO05D004653 4.5e-24 115.5 72 76.4
BolC8t52064H Brassica oleracea HOM05D003702 ORTHO05D004653 4.5e-24 115.5 72 76.4
BraA09t41530Z Brassica rapa HOM05D003702 ORTHO05D004653 4.5e-24 115.5 72 76.4
Nn4g24020 Nelumbo nucifera HOM05D003702 ORTHO05D004653 1.7e-23 113.6 103 59.2
Cfa015818 Carpinus fangiana HOM05D003702 ORTHO05D004653 2.2e-23 113.2 103 59.2
ClCG05G022350 Citrullus lanatus HOM05D003702 ORTHO05D004653 2.2e-23 113.2 93 55.9
Dinv04909 Davidia involucrata HOM05D003702 ORTHO05D004653 2.2e-23 113.2 103 58.3
QL01p003075 Quercus lobata HOM05D003702 ORTHO05D004653 2.2e-23 113.2 103 58.3
Atru.chr11.329 Acer truncatum HOM05D003702 ORTHO05D004653 2.9e-23 112.8 101 60.4
CSS0038999 Camellia sinensis var. sinensis HOM05D003702 ORTHO05D004653 2.9e-23 112.8 103 57.3
CSS0044058 Camellia sinensis var. sinensis HOM05D003702 ORTHO05D004653 2.9e-23 112.8 103 57.3
Hund20721 Selenicereus undatus HOM05D003702 ORTHO05D004653 2.9e-23 112.8 103 58.3
THA.LOC104805051 Tarenaya hassleriana HOM05D003702 ORTHO05D004653 2.9e-23 112.8 103 57.3
MD13G1033100 Malus domestica HOM05D003702 ORTHO05D004653 3.8e-23 112.5 103 57.3
vmacro12220 Vaccinium macrocarpon HOM05D003702 ORTHO05D004653 3.8e-23 112.5 104 56.7
CsaV3_5G028680 Cucumis sativus L. HOM05D003702 ORTHO05D004653 5.0e-23 112.1 103 56.3
Prupe.1G319700 Prunus persica HOM05D003702 ORTHO05D004653 5.0e-23 112.1 103 57.3
Nitab4.5_0003886g0040 Nicotiana tabacum HOM05D003702 ORTHO05D004653 6.5e-23 111.7 103 57.3
Sc04g0005900 Simmondsia chinensis HOM05D003702 ORTHO05D004653 6.5e-23 111.7 103 56.3
Sc14g0007250 Simmondsia chinensis HOM05D003702 ORTHO05D004653 6.5e-23 111.7 103 57.3
CDE06G0787 Ceratophyllum demersum HOM05D003702 ORTHO05D004653 8.5e-23 111.3 102 57.8
HanXRQChr17g0553131 Helianthus annuus HOM05D003702 ORTHO05D004653 8.5e-23 111.3 103 55.3
MD16G1035000 Malus domestica HOM05D003702 ORTHO05D004653 8.5e-23 111.3 103 58.3
Nitab4.5_0000350g0060 Nicotiana tabacum HOM05D003702 ORTHO05D004653 8.5e-23 111.3 103 56.3
DCAR_030184 Daucus carota HOM05D003702 ORTHO05D004653 1.1e-22 110.9 103 56.3
Manes.14G109300 Manihot esculenta HOM05D003702 ORTHO05D004653 1.1e-22 110.9 103 57.3
Peaxi162Scf00205g01127 Petunia axillaris HOM05D003702 ORTHO05D004653 1.1e-22 110.9 103 56.3
SGA_v2.0_scaffold170G38819 Striga asiatica HOM05D003702 ORTHO05D004653 1.1e-22 110.9 103 60.2
Thecc.02G215000 Theobroma cacao HOM05D003702 ORTHO05D004653 1.1e-22 110.9 103 57.3
GSVIVG01011808001 Vitis vinifera HOM05D003702 ORTHO05D004653 1.1e-22 110.9 103 57.3
Aqoxy5G03879 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 1.5e-22 110.5 103 57.3
Ciclev10015341m.g Citrus clementina HOM05D003702 ORTHO05D004653 1.5e-22 110.5 101 58.4
Cc11_g09310 Coffea canephora HOM05D003702 ORTHO05D004653 1.5e-22 110.5 103 55.3
MELO3C005332.2 Cucumis melo HOM05D003702 ORTHO05D004653 1.5e-22 110.5 103 56.3
ECA233G3005 Erigeron canadensis HOM05D003702 ORTHO05D004653 1.5e-22 110.5 103 55.3
Gohir.A09G005100 Gossypium hirsutum HOM05D003702 ORTHO05D004653 1.5e-22 110.5 103 55.3
Gohir.D09G004400 Gossypium hirsutum HOM05D003702 ORTHO05D004653 1.5e-22 110.5 103 55.3
Gorai.006G006000 Gossypium raimondii HOM05D003702 ORTHO05D004653 1.5e-22 110.5 103 55.3
Potri.010G117500 Populus trichocarpa HOM05D003702 ORTHO05D004653 1.5e-22 110.5 103 56.3
Sabra10G0086900 Salix brachista HOM05D003702 ORTHO05D004653 1.5e-22 110.5 102 56.9
Sabra10G0088500 Salix brachista HOM05D003702 ORTHO05D004653 1.5e-22 110.5 102 56.9
ATR0691G123 Amborella trichopoda HOM05D003702 ORTHO05D004653 1.9e-22 110.2 103 56.3
Aqoxy6G00508 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 1.9e-22 110.2 103 57.3
CAN.G1489.18 Capsicum annuum HOM05D003702 ORTHO05D004653 1.9e-22 110.2 103 54.4
COL.COLO4_38548 Corchorus olitorius HOM05D003702 ORTHO05D004653 1.9e-22 110.2 103 55.3
Haze_00678 Corylus avellana HOM05D003702 ORTHO05D004653 1.9e-22 110.2 103 58.3
Lsat_1_v5_gn_8_41841 Lactuca sativa HOM05D003702 ORTHO05D004653 1.9e-22 110.2 103 55.3
Lj6A750T93 Lonicera japonica HOM05D003702 ORTHO05D004653 1.9e-22 110.2 103 56.3
MBI10_g06746_MAGBIO Magnolia biondii HOM05D003702 ORTHO05D004653 1.9e-22 110.2 103 55.3
Potri.008G126100 Populus trichocarpa HOM05D003702 ORTHO05D004653 1.9e-22 110.2 102 56.9
Rhsim09G0102000 Rhododendron simsii HOM05D003702 ORTHO05D004653 1.9e-22 110.2 72 70.8
TAR371G0966 Trochodendron aralioides HOM05D003702 ORTHO05D004653 1.9e-22 110.2 103 56.3
Ca_30213_v3 Cicer arietinum L. HOM05D003702 ORTHO05D004653 2.5e-22 109.8 103 53.4
Duzib268G1865 Durio zibethinus HOM05D003702 ORTHO05D004653 2.5e-22 109.8 103 56.3
Manes.06G063400 Manihot esculenta HOM05D003702 ORTHO05D004653 2.5e-22 109.8 103 55.3
TPR.G4874 Trifolium pratense HOM05D003702 ORTHO05D004653 2.5e-22 109.8 103 53.4
Actinidia16697 Actinidia chinensis HOM05D003702 ORTHO05D004653 3.2e-22 109.4 103 57.3
Dinv16161 Davidia involucrata HOM05D003702 ORTHO05D004653 3.2e-22 109.4 72 72.2
FvH4_4g26430 Fragaria vesca HOM05D003702 ORTHO05D004653 3.2e-22 109.4 103 54.4
FAN07G0957 Fragaria x ananassa HOM05D003702 ORTHO05D004653 3.2e-22 109.4 103 54.4
FAN12G0213 Fragaria x ananassa HOM05D003702 ORTHO05D004653 3.2e-22 109.4 103 54.4
FAN12G3413 Fragaria x ananassa HOM05D003702 ORTHO05D004653 3.2e-22 109.4 103 54.4
FAN17G2320 Fragaria x ananassa HOM05D003702 ORTHO05D004653 3.2e-22 109.4 103 54.4
FAN22G0804 Fragaria x ananassa HOM05D003702 ORTHO05D004653 3.2e-22 109.4 103 54.4
Lsat_1_v5_gn_3_56601 Lactuca sativa HOM05D003702 ORTHO05D004653 3.2e-22 109.4 103 55.3
PSO017G5274 Papaver somniferum HOM05D003702 ORTHO05D004653 3.2e-22 109.4 103 57.3
PSO478G4444 Papaver somniferum HOM05D003702 ORTHO05D004653 3.2e-22 109.4 103 57.3
RcHm_v2.0_Chr4g0434061 Rosa chinensis HOM05D003702 ORTHO05D004653 3.2e-22 109.4 103 54.4
TWI75G1265 Tripterygium wilfordii HOM05D003702 ORTHO05D004653 3.2e-22 109.4 103 55.3
vmacro10616 Vaccinium macrocarpon HOM05D003702 ORTHO05D004653 3.2e-22 109.4 103 55.3
Ah.05g167700 Amaranthus hybridus HOM05D003702 ORTHO05D004653 4.2e-22 109.0 72 68.1
MSTRG.2203 Avicennia marina HOM05D003702 ORTHO05D004653 4.2e-22 109.0 103 56.3
CAN.G139.1 Capsicum annuum HOM05D003702 ORTHO05D004653 4.2e-22 109.0 103 54.4
AUR62002771 Chenopodium quinoa HOM05D003702 ORTHO05D004653 4.2e-22 109.0 72 69.4
SGA_v2.0_scaffold14G06919 Striga asiatica HOM05D003702 ORTHO05D004653 4.2e-22 109.0 111 55.0
AUR62037259 Chenopodium quinoa HOM05D003702 ORTHO05D004653 5.5e-22 108.6 72 68.1
MELO3C012286.2 Cucumis melo HOM05D003702 ORTHO05D004653 5.5e-22 108.6 103 53.4
CsaV3_5G034740 Cucumis sativus L. HOM05D003702 ORTHO05D004653 5.5e-22 108.6 103 53.4
ECA246G4421 Erigeron canadensis HOM05D003702 ORTHO05D004653 5.5e-22 108.6 103 56.3
GSVIVG01008367001 Vitis vinifera HOM05D003702 ORTHO05D004653 5.5e-22 108.6 72 69.4
EL10Ac1g01504 Beta vulgaris HOM05D003702 ORTHO05D004653 7.2e-22 108.2 72 69.4
CiPaw.05G244900 Carya illinoinensis HOM05D003702 ORTHO05D004653 7.2e-22 108.2 101 56.4
Duzib248G1136 Durio zibethinus HOM05D003702 ORTHO05D004653 7.2e-22 108.2 103 56.3
Oeu031392.1 Olea europaea HOM05D003702 ORTHO05D004653 7.2e-22 108.2 103 56.3
Sabra08G0095000 Salix brachista HOM05D003702 ORTHO05D004653 7.2e-22 108.2 102 54.9
Sed0016261 Sechium edule HOM05D003702 ORTHO05D004653 7.2e-22 108.2 101 56.4
Sed0022429 Sechium edule HOM05D003702 ORTHO05D004653 7.2e-22 108.2 103 55.3
CiPaw.06G015200 Carya illinoinensis HOM05D003702 ORTHO05D004653 9.4e-22 107.8 104 53.8
Migut.E00388 Erythranthe guttata HOM05D003702 ORTHO05D004653 9.4e-22 107.8 103 57.3
Zm00001eb125990 Zea mays HOM05D003702 ORTHO05D004653 9.4e-22 107.8 103 51.5
ClCG01G006000 Citrullus lanatus HOM05D003702 ORTHO05D004653 1.2e-21 107.5 72 66.7
Eucgr.B02865 Eucalyptus grandis HOM05D003702 ORTHO05D004653 1.2e-21 107.5 72 66.7
Lalb_Chr06g0165751 Lupinus albus HOM05D003702 ORTHO05D004653 1.2e-21 107.5 103 53.4
Solyc04g007520.3 Solanum lycopersicum HOM05D003702 ORTHO05D004653 1.2e-21 107.5 103 54.4
Sopen04g002600 Solanum pennellii HOM05D003702 ORTHO05D004653 1.2e-21 107.5 103 54.4
MSTRG.7632 Avicennia marina HOM05D003702 ORTHO05D004653 2.1e-21 106.7 103 55.3
MSTRG.874 Avicennia marina HOM05D003702 ORTHO05D004653 2.1e-21 106.7 103 54.4
CDE07G1100 Ceratophyllum demersum HOM05D003702 ORTHO05D004653 2.1e-21 106.7 71 69.0
Lalb_Chr21g0308661 Lupinus albus HOM05D003702 ORTHO05D004653 2.1e-21 106.7 103 54.4
Nitab4.5_0000881g0100 Nicotiana tabacum HOM05D003702 ORTHO05D004653 2.1e-21 106.7 72 65.3
Solyc05g008580.3 Solanum lycopersicum HOM05D003702 ORTHO05D004653 2.1e-21 106.7 103 54.4
Sopen05g004420 Solanum pennellii HOM05D003702 ORTHO05D004653 2.1e-21 106.7 103 54.4
PGSC0003DMG400030564 Solanum tuberosum HOM05D003702 ORTHO05D004653 2.1e-21 106.7 103 54.4
Nitab4.5_0004597g0050 Nicotiana tabacum HOM05D003702 ORTHO05D004653 2.7e-21 106.3 72 63.9
SalBow8G2252 Salvia bowleyana HOM05D003702 ORTHO05D004653 2.7e-21 106.3 103 54.4
Glyma.10G268300 Glycine max HOM05D003702 ORTHO05D004653 3.6e-21 105.9 103 53.4
Glyma.20G122800 Glycine max HOM05D003702 ORTHO05D004653 3.6e-21 105.9 103 53.4
Gohir.A12G141400 Gossypium hirsutum HOM05D003702 ORTHO05D004653 3.6e-21 105.9 103 55.3
Gohir.D12G146300 Gossypium hirsutum HOM05D003702 ORTHO05D004653 3.6e-21 105.9 103 55.3
Gorai.008G157600 Gossypium raimondii HOM05D003702 ORTHO05D004653 3.6e-21 105.9 103 55.3
Phvul.007G034000 Phaseolus vulgaris HOM05D003702 ORTHO05D004653 3.6e-21 105.9 103 53.4
SalBow8G5575 Salvia bowleyana HOM05D003702 ORTHO05D004653 3.6e-21 105.9 103 55.3
VMungo0720G1815 Vigna mungo HOM05D003702 ORTHO05D004653 3.6e-21 105.9 103 53.4
Lj5g0010985 Lotus japonicus HOM05D003702 ORTHO05D004653 4.7e-21 105.5 103 52.4
HanXRQChr14g0459241 Helianthus annuus HOM05D003702 ORTHO05D004653 6.1e-21 105.1 103 52.4
Lalb_Chr02g0145651 Lupinus albus HOM05D003702 ORTHO05D004653 6.1e-21 105.1 103 54.4
Medtr1g109120 Medicago truncatula HOM05D003702 ORTHO05D004653 6.1e-21 105.1 72 65.3
Psat6g222840 Pisum sativum HOM05D003702 ORTHO05D004653 6.1e-21 105.1 72 65.3
Oeu036128.1 Olea europaea HOM05D003702 ORTHO05D004653 8.0e-21 104.8 103 54.4
Peaxi162Scf00897g00114 Petunia axillaris HOM05D003702 ORTHO05D004653 8.0e-21 104.8 103 53.4
Migut.L01016 Erythranthe guttata HOM05D003702 ORTHO05D004653 1.0e-20 104.4 72 66.7
arahy.Tifrunner.gnm1.ann1.8F881C Arachis hypogaea HOM05D003702 ORTHO05D004653 1.4e-20 104.0 72 65.3
arahy.Tifrunner.gnm1.ann1.A779NY Arachis hypogaea HOM05D003702 ORTHO05D004653 1.4e-20 104.0 72 65.3
Aa31LG1G40 Aethionema arabicum HOM05D003702 ORTHO05D004653 1.8e-20 103.6 63 73.0
Sed0021449 Sechium edule HOM05D003702 ORTHO05D004653 1.8e-20 103.6 104 51.0
Zm00001eb334750 Zea mays HOM05D003702 ORTHO05D004653 2.3e-20 103.2 103 49.5
HPP92_026069 Vanilla planifolia HOM05D003702 ORTHO05D004653 3.0e-20 102.8 103 51.5
Zm00001eb343120 Zea mays HOM05D003702 ORTHO05D004653 6.8e-20 101.7 103 50.5
BcaB01g00253 Brassica carinata HOM05D038349 ORTHO05D092297 1.5e-19 100.5 125 52.8
Zm00001eb295120 Zea mays HOM05D003702 ORTHO05D004653 1.5e-19 100.5 103 51.5
HPP92_008281 Vanilla planifolia HOM05D003702 ORTHO05D004653 2.0e-19 100.1 72 61.1
Os05g0554400 Oryza sativa ssp. japonica HOM05D003702 ORTHO05D004653 7.5e-19 98.2 103 48.5
unitig_746.g26864 Utricularia gibba HOM05D003702 ORTHO05D004653 2.2e-18 96.7 72 62.5
BcaC06g35173 Brassica carinata HOM05D005941 ORTHO05D007879 1.1e-17 94.4 80 58.8
Duzib251G0696 Durio zibethinus HOM05D003702 ORTHO05D004653 1.2e-16 90.9 59 69.5
Pp3c4_15740 Physcomitrium patens HOM05D003702 ORTHO05D004653 1.0e-15 87.8 96 49.0
SMO116G0260 Selaginella moellendorffii HOM05D003702 ORTHO05D004653 8.5e-15 84.7 72 56.9
HPP92_021847 Vanilla planifolia HOM05D003702 ORTHO05D004653 8.5e-15 84.7 102 45.1
Pp3c26_4170 Physcomitrium patens HOM05D003702 ORTHO05D004653 7.2e-14 81.6 86 46.5
AagrBONN_evm.TU.Sc2ySwM_117.3898 Anthoceros agrestis HOM05D003702 ORTHO05D004653 1.4e-12 77.4 103 41.7
BraA01t02377Z Brassica rapa HOM05D062043 ORTHO05D014526 2.3e-12 76.6 56 69.6
BraA05t19599Z Brassica rapa HOM05D062043 ORTHO05D014526 2.3e-12 76.6 56 69.6
BcaC02g07984 Brassica carinata HOM05D003702 ORTHO05D014526 3.4e-11 72.8 31 93.5
Mapoly0057s0110 Marchantia polymorpha HOM05D003702 ORTHO05D004653 1.3e-10 70.9 72 45.8
BolC6t37169H Brassica oleracea HOM05D003702 ORTHO05D019976 2.9e-07 59.7 43 55.8
BcaC01g05019 Brassica carinata HOM05D019496 ORTHO05D019976 3.8e-07 59.3 39 61.5


User provided reference genes

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