Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p39020 Brassica napus HOM05D007019 ORTHO05D008398 4.7e-256 887.5 492 100.0
BolC8t51475H Brassica oleracea HOM05D007019 ORTHO05D008398 2.6e-254 881.7 492 99.6
A09p56030 Brassica napus HOM05D007019 ORTHO05D008398 2.9e-237 825.1 493 91.9
A09p56090 Brassica napus HOM05D007019 ORTHO05D008398 1.2e-235 819.7 500 91.4
BcaC07g40903 Brassica carinata HOM05D007019 ORTHO05D008398 5.6e-233 810.8 492 94.1
BraA09t41004Z Brassica rapa HOM05D007019 ORTHO05D008398 2.1e-232 808.9 500 89.4
Sp4g03850 Schrenkiella parvula HOM05D007019 ORTHO05D008398 1.1e-204 716.8 503 80.5
CARHR294580 Cardamine hirsuta HOM05D007019 ORTHO05D008398 7.4e-193 677.6 509 76.4
Thhalv10000137m.g Eutrema salsugineum HOM05D007019 ORTHO05D008398 1.4e-191 673.3 512 74.8
AT2G24830 Arabidopsis thaliana HOM05D007019 ORTHO05D008398 3.3e-185 652.1 506 74.5
Carub.0004s0445 Capsella rubella HOM05D007019 ORTHO05D008398 4.8e-184 648.3 508 72.6
AL4G15870 Arabidopsis lyrata HOM05D007019 ORTHO05D008398 1.1e-183 647.1 503 74.0
Aa31LG7G11570 Aethionema arabicum HOM05D007019 ORTHO05D008398 5.9e-174 614.8 516 71.5
THA.LOC104819948 Tarenaya hassleriana HOM05D007019 ORTHO05D008398 1.6e-158 563.5 520 67.9
Cfa013011 Carpinus fangiana HOM05D007019 ORTHO05D008398 7.0e-151 538.1 512 60.4
CiPaw.07G232900 Carya illinoinensis HOM05D007019 ORTHO05D008398 5.9e-150 535.0 513 59.6
Lj7A737G40 Lonicera japonica HOM05D007019 ORTHO05D008398 2.0e-145 520.0 525 57.1
arahy.Tifrunner.gnm1.ann1.SS16UG Arachis hypogaea HOM05D007019 ORTHO05D008398 2.6e-145 519.6 508 58.3
arahy.Tifrunner.gnm1.ann1.MG10WM Arachis hypogaea HOM05D007019 ORTHO05D008398 2.2e-144 516.5 508 58.3
Manes.16G132200 Manihot esculenta HOM05D007019 ORTHO05D008398 4.9e-144 515.4 510 57.8
Eucgr.C04032 Eucalyptus grandis HOM05D007019 ORTHO05D008398 7.0e-143 511.5 506 58.1
Gorai.009G064200 Gossypium raimondii HOM05D007019 ORTHO05D008398 7.0e-143 511.5 517 59.6
TWI32G0429 Tripterygium wilfordii HOM05D007019 ORTHO05D008398 1.6e-142 510.4 509 56.0
unitig_46.g18223 Utricularia gibba HOM05D007019 ORTHO05D008398 1.6e-142 510.4 500 56.8
Ciclev10008089m.g Citrus clementina HOM05D007019 ORTHO05D008398 4.6e-142 508.8 510 57.3
Lj6g0025581 Lotus japonicus HOM05D007019 ORTHO05D008398 4.6e-142 508.8 509 57.2
QL02p018053 Quercus lobata HOM05D007019 ORTHO05D008398 1.3e-141 507.3 508 58.3
Hma1.2p1_0737F.1_g210790 Hydrangea macrophylla HOM05D007019 ORTHO05D008398 2.3e-141 506.5 521 57.2
Atru.chr7.2574 Acer truncatum HOM05D007019 ORTHO05D008398 5.0e-141 505.4 507 57.6
Glyma.18G091000 Glycine max HOM05D007019 ORTHO05D008398 5.0e-141 505.4 511 57.7
Thecc.09G013400 Theobroma cacao HOM05D007019 ORTHO05D008398 6.6e-141 505.0 513 58.1
Duzib168G1437 Durio zibethinus HOM05D007019 ORTHO05D008398 1.1e-140 504.2 525 57.3
Actinidia14141 Actinidia chinensis HOM05D007019 ORTHO05D008398 4.3e-140 502.3 511 56.9
MSTRG.1627 Avicennia marina HOM05D007019 ORTHO05D008398 4.7e-139 498.8 505 56.8
Oeu021907.1 Olea europaea HOM05D007019 ORTHO05D008398 6.2e-139 498.4 509 57.6
CANSAT25G0065 Cannabis sativa HOM05D007019 ORTHO05D008398 1.1e-138 497.7 509 56.2
COL.COLO4_18972 Corchorus olitorius HOM05D007019 ORTHO05D008398 3.1e-138 496.1 514 58.4
Potri.018G016200 Populus trichocarpa HOM05D007019 ORTHO05D008398 4.0e-138 495.7 506 55.9
Prupe.1G396900 Prunus persica HOM05D007019 ORTHO05D008398 5.2e-138 495.4 512 57.2
Nn6g33490 Nelumbo nucifera HOM05D007019 ORTHO05D008398 1.2e-137 494.2 523 57.4
SGA_v2.0_scaffold169G38600 Striga asiatica HOM05D007019 ORTHO05D008398 2.0e-137 493.4 507 58.6
Glyma.08G321000 Glycine max HOM05D007019 ORTHO05D008398 2.6e-137 493.0 510 56.3
Rhsim02G0217600 Rhododendron simsii HOM05D007019 ORTHO05D008398 3.4e-137 492.7 509 58.3
Lalb_Chr15g0081591 Lupinus albus HOM05D007019 ORTHO05D008398 9.8e-137 491.1 510 55.5
Gohir.A05G061000 Gossypium hirsutum HOM05D007019 ORTHO05D008398 3.7e-136 489.2 517 57.4
FvH4_2g41350 Fragaria vesca HOM05D007019 ORTHO05D008398 8.3e-136 488.0 504 54.0
CSS0016918 Camellia sinensis var. sinensis HOM05D007019 ORTHO05D008398 1.1e-135 487.6 509 56.0
CSS0023374 Camellia sinensis var. sinensis HOM05D007019 ORTHO05D008398 1.1e-135 487.6 509 56.0
Cc00_g05220 Coffea canephora HOM05D007019 ORTHO05D008398 1.4e-135 487.3 511 56.4
Psat5g174160 Pisum sativum HOM05D007019 ORTHO05D008398 4.1e-135 485.7 514 54.7
MBI14_g16432_MAGBIO Magnolia biondii HOM05D007019 ORTHO05D008398 5.4e-135 485.3 509 58.5
Gohir.D05G063200 Gossypium hirsutum HOM05D007019 ORTHO05D008398 7.0e-135 485.0 516 57.2
Migut.E01445 Erythranthe guttata HOM05D007019 ORTHO05D008398 2.7e-134 483.0 506 54.0
PGR044G2245 Punica granatum HOM05D007019 ORTHO05D008398 2.7e-134 483.0 509 53.2
Solyc08g068820.3 Solanum lycopersicum HOM05D007019 ORTHO05D008398 6.0e-134 481.9 510 55.5
DCAR_003030 Daucus carota HOM05D007019 ORTHO05D008398 1.0e-133 481.1 508 54.3
Medtr3g053700 Medicago truncatula HOM05D007019 ORTHO05D008398 1.3e-133 480.7 509 55.4
Phvul.006G047900 Phaseolus vulgaris HOM05D007019 ORTHO05D008398 1.3e-133 480.7 511 56.4
ClCG08G013800 Citrullus lanatus HOM05D007019 ORTHO05D008398 1.7e-133 480.3 511 55.6
PSO210G0129 Papaver somniferum HOM05D007019 ORTHO05D008398 2.3e-133 479.9 522 53.3
PGSC0003DMG400014784 Solanum tuberosum HOM05D007019 ORTHO05D008398 5.1e-133 478.8 511 55.8
CDE04G0815 Ceratophyllum demersum HOM05D007019 ORTHO05D008398 6.6e-133 478.4 514 56.4
PSO731G0070 Papaver somniferum HOM05D007019 ORTHO05D008398 6.6e-133 478.4 509 53.8
VMungo0540G1233 Vigna mungo HOM05D007019 ORTHO05D008398 8.6e-133 478.0 511 56.4
Sed0002524 Sechium edule HOM05D007019 ORTHO05D008398 1.9e-132 476.9 518 55.0
MELO3C011312.2 Cucumis melo HOM05D007019 ORTHO05D008398 5.6e-132 475.3 511 55.2
Ca_26389_v3 Cicer arietinum L. HOM05D007019 ORTHO05D008398 8.1e-131 471.5 508 55.9
RcHm_v2.0_Chr6g0299181 Rosa chinensis HOM05D007019 ORTHO05D008398 1.4e-130 470.7 509 54.4
Cpa.g.sc148.46 Carica papaya HOM05D007019 ORTHO05D008398 1.8e-130 470.3 509 54.8
CsaV3_2G032590 Cucumis sativus L. HOM05D007019 ORTHO05D008398 1.8e-130 470.3 511 54.4
TPR.G32253 Trifolium pratense HOM05D007019 ORTHO05D008398 2.3e-130 469.9 511 55.8
Lsat_1_v5_gn_6_78060 Lactuca sativa HOM05D007019 ORTHO05D008398 3.1e-130 469.5 509 52.8
FAN27G2994 Fragaria x ananassa HOM05D007019 ORTHO05D008398 3.4e-129 466.1 487 53.8
HanXRQChr03g0084841 Helianthus annuus HOM05D007019 ORTHO05D008398 4.4e-129 465.7 529 50.7
Aqoxy7G03288 Aquilegia oxysepala HOM05D007019 ORTHO05D008398 1.7e-128 463.8 511 53.6
ATR0580G102 Amborella trichopoda HOM05D007019 ORTHO05D008398 3.2e-127 459.5 520 51.7
Sc23g0006120 Simmondsia chinensis HOM05D007019 ORTHO05D008398 2.7e-126 456.4 526 54.9
ECA240G4302 Erigeron canadensis HOM05D007019 ORTHO05D008398 1.0e-125 454.5 525 51.6
Hund25606 Selenicereus undatus HOM05D007019 ORTHO05D008398 3.9e-125 452.6 529 52.0
Zm00001eb257650 Zea mays HOM05D007019 ORTHO05D008398 1.1e-124 451.1 512 52.7
EL10Ac2g02454 Beta vulgaris HOM05D007019 ORTHO05D008398 5.6e-124 448.7 557 48.8
CAN.G273.24 Capsicum annuum HOM05D007019 ORTHO05D008398 9.5e-124 448.0 511 51.5
Sabra18G0019700 Salix brachista HOM05D007019 ORTHO05D008398 2.8e-123 446.4 534 50.7
HPP92_010745 Vanilla planifolia HOM05D007019 ORTHO05D008398 2.9e-120 436.4 512 50.8
FAN15G0718 Fragaria x ananassa HOM05D007019 ORTHO05D008398 2.4e-119 433.3 519 49.5
AUR62024776 Chenopodium quinoa HOM05D007019 ORTHO05D008398 2.8e-115 419.9 545 49.4
AUR62032443 Chenopodium quinoa HOM05D007019 ORTHO05D008398 8.1e-115 418.3 531 49.0
Nitab4.5_0000406g0110 Nicotiana tabacum HOM05D007019 ORTHO05D008398 1.8e-114 417.2 512 51.6
Sopen08g022560 Solanum pennellii HOM05D007019 ORTHO05D008398 1.5e-113 414.1 411 56.0
TAR636G0280 Trochodendron aralioides HOM05D007019 ORTHO05D008398 1.9e-108 397.1 363 57.6
Nitab4.5_0012106g0030 Nicotiana tabacum HOM05D007019 ORTHO05D008398 7.3e-108 395.2 509 48.5
SEGI_04420 Sequoiadendron giganteum HOM05D007019 ORTHO05D008398 1.5e-105 387.5 524 47.1
vmacro11274 Vaccinium macrocarpon HOM05D007019 ORTHO05D008398 5.8e-97 359.0 504 47.4
Dinv03401 Davidia involucrata HOM05D007019 ORTHO05D008398 7.1e-95 352.1 376 58.0
Pp3c21_5730 Physcomitrium patens HOM05D007019 ORTHO05D008398 4.6e-94 349.4 538 40.7
Mapoly0067s0020 Marchantia polymorpha HOM05D007019 ORTHO05D008398 9.6e-92 341.7 536 42.4
MD08G1051900 Malus domestica HOM05D007019 ORTHO05D008398 2.1e-91 340.5 371 57.7
SMO116G0382 Selaginella moellendorffii HOM05D007019 ORTHO05D008398 7.6e-89 332.0 504 44.2
Hma1.2p1_0737F.1_g210800 Hydrangea macrophylla HOM05D007019 ORTHO05D008398 3.1e-82 310.1 351 54.1
SHI21092 Sapria himalayana HOM05D007019 ORTHO05D008398 3.2e-71 273.5 591 36.2
Dinv10229 Davidia involucrata HOM05D007019 ORTHO05D008398 1.5e-60 238.0 366 47.5
GSVIVG01036005001 Vitis vinifera HOM05D007019 ORTHO05D008398 4.8e-59 233.0 189 63.0
AagrBONN_evm.TU.Sc2ySwM_117.1463 Anthoceros agrestis HOM05D007019 ORTHO05D008398 7.2e-55 219.2 374 44.9
CBR_g30106 Chara braunii HOM05D007019 ORTHO05D008398 1.6e-49 201.4 578 34.6
Peaxi162Scf01419g00115 Petunia axillaris HOM05D007019 ORTHO05D008398 2.4e-34 151.0 146 55.5
SalBow6G1623 Salvia bowleyana HOM05D007019 ORTHO05D008398 5.0e-32 143.3 196 43.9
SMO116G0105 Selaginella moellendorffii HOM05D007019 ORTHO05D008398 1.7e-27 128.3 352 33.5
Os02g0793000 Oryza sativa ssp. japonica HOM05D007019 ORTHO05D008398 4.3e-23 113.6 106 54.7
AagrBONN_evm.TU.Sc2ySwM_117.1462 Anthoceros agrestis HOM05D007019 ORTHO05D008398 1.4e-18 98.6 148 40.5
SMO269G0003 Selaginella moellendorffii HOM05D007019 ORTHO05D008398 4.3e-15 87.0 344 28.2
CSS0028433 Camellia sinensis var. sinensis HOM05D004574 ORTHO05D005612 1.1e-07 62.4 55 52.7
ECA234G1322 Erigeron canadensis HOM05D004574 ORTHO05D005612 3.3e-07 60.8 83 41.0
Actinidia21909 Actinidia chinensis HOM05D004574 ORTHO05D005612 9.6e-07 59.3 63 47.6
Actinidia04251 Actinidia chinensis HOM05D004574 ORTHO05D005612 1.2e-06 58.9 63 47.6
Cre07.g355700 Chlamydomonas reinhardtii HOM05D007019 ORTHO05D008398 1.2e-06 58.9 250 26.8
HanXRQChr12g0357011 Helianthus annuus HOM05D004574 ORTHO05D005612 1.2e-06 58.9 59 49.2
Lsat_1_v5_gn_5_90461 Lactuca sativa HOM05D004574 ORTHO05D005612 1.2e-06 58.9 49 57.1
DCAR_017762 Daucus carota HOM05D004574 ORTHO05D005612 2.8e-06 57.8 73 42.5
Nn2g12259 Nelumbo nucifera HOM05D004574 ORTHO05D005612 3.6e-06 57.4 56 48.2
Oeu040778.1 Olea europaea HOM05D004574 ORTHO05D005612 3.6e-06 57.4 55 49.1
Haze_19313 Corylus avellana HOM05D004574 ORTHO05D005612 4.7e-06 57.0 56 46.4
Sabra06G0145700 Salix brachista HOM05D004574 ORTHO05D005612 4.7e-06 57.0 73 42.5
Cfa020884 Carpinus fangiana HOM05D004574 ORTHO05D005612 6.2e-06 56.6 56 46.4
CiPaw.16G117400 Carya illinoinensis HOM05D004574 ORTHO05D005612 6.2e-06 56.6 63 42.9
DCAR_014931 Daucus carota HOM05D004574 ORTHO05D005612 6.2e-06 56.6 53 52.8
Sopen07g003110 Solanum pennellii HOM05D004574 ORTHO05D005612 8.1e-06 56.2 71 40.8


User provided reference genes

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