Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p38730 Brassica napus HOM05D005419 ORTHO05D007365 1.5e-169 599.4 292 100.0
BolC8t51443H Brassica oleracea HOM05D005419 ORTHO05D007365 1.5e-169 599.4 292 100.0
BcaC07g40875 Brassica carinata HOM05D005419 ORTHO05D007365 1.4e-167 592.8 294 99.0
A09p55730 Brassica napus HOM05D005419 ORTHO05D007365 5.4e-167 590.9 292 98.3
BraA09t40974Z Brassica rapa HOM05D005419 ORTHO05D007365 5.4e-167 590.9 292 98.3
BcaB08g35172 Brassica carinata HOM05D005419 ORTHO05D007365 8.9e-162 573.5 290 95.2
BcaB06g28051 Brassica carinata HOM05D005419 ORTHO05D007365 4.6e-158 561.2 292 92.1
Thhalv10000272m.g Eutrema salsugineum HOM05D005419 ORTHO05D007365 6.6e-157 557.4 290 92.4
AL4G16610 Arabidopsis lyrata HOM05D005419 ORTHO05D007365 1.5e-156 556.2 290 92.1
Sp4g04430 Schrenkiella parvula HOM05D005419 ORTHO05D007365 3.3e-156 555.1 290 91.7
Carub.0004s0490 Capsella rubella HOM05D005419 ORTHO05D007365 9.6e-156 553.5 290 91.7
A04p19650 Brassica napus HOM05D005419 ORTHO05D007365 1.4e-154 549.7 292 90.1
BraA04t17556Z Brassica rapa HOM05D005419 ORTHO05D007365 1.4e-154 549.7 292 90.1
BolC4t27063H Brassica oleracea HOM05D005419 ORTHO05D007365 3.4e-153 545.0 290 90.3
AT2G25280 Arabidopsis thaliana HOM05D005419 ORTHO05D007365 7.6e-153 543.9 290 90.0
C04p55260 Brassica napus HOM05D005419 ORTHO05D007365 7.6e-153 543.9 290 90.0
BcaC02g08359 Brassica carinata HOM05D005419 ORTHO05D007365 1.7e-152 542.7 290 89.7
Aa31sc229G10 Aethionema arabicum HOM05D005419 ORTHO05D007365 3.5e-150 535.0 292 87.0
THA.LOC104805589 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 3.5e-142 508.4 292 83.2
Phvul.001G049700 Phaseolus vulgaris HOM05D005419 ORTHO05D007365 3.3e-140 501.9 288 79.9
CARHR116260 Cardamine hirsuta HOM05D005419 ORTHO05D007365 1.6e-139 499.6 292 81.8
MD15G1129200 Malus domestica HOM05D005419 ORTHO05D007365 6.2e-139 497.7 292 79.5
Sed0010362 Sechium edule HOM05D005419 ORTHO05D007365 6.2e-139 497.7 288 79.5
VMungo0647G0032 Vigna mungo HOM05D005419 ORTHO05D007365 8.1e-139 497.3 288 79.2
CANSAT25G3306 Cannabis sativa HOM05D005419 ORTHO05D007365 1.1e-138 496.9 288 80.6
MD08G1152600 Malus domestica HOM05D005419 ORTHO05D007365 1.4e-138 496.5 292 79.5
Dinv15871 Davidia involucrata HOM05D005419 ORTHO05D007365 1.8e-138 496.1 288 79.2
PGR119G2552 Punica granatum HOM05D005419 ORTHO05D007365 1.8e-138 496.1 288 80.2
arahy.Tifrunner.gnm1.ann1.2DG9CD Arachis hypogaea HOM05D005419 ORTHO05D007365 2.4e-138 495.7 287 80.1
arahy.Tifrunner.gnm1.ann1.X3TF0E Arachis hypogaea HOM05D005419 ORTHO05D007365 2.4e-138 495.7 287 80.1
CiPaw.07G226000 Carya illinoinensis HOM05D005419 ORTHO05D007365 3.1e-138 495.4 292 78.8
CsaV3_2G032220 Cucumis sativus L. HOM05D005419 ORTHO05D007365 4.0e-138 495.0 292 78.4
Atru.chr7.2482 Acer truncatum HOM05D005419 ORTHO05D007365 5.3e-138 494.6 288 79.2
Gorai.010G116600 Gossypium raimondii HOM05D005419 ORTHO05D007365 5.3e-138 494.6 292 79.5
Duzib150G0083 Durio zibethinus HOM05D005419 ORTHO05D007365 6.9e-138 494.2 292 79.1
Glyma.14G113800 Glycine max HOM05D005419 ORTHO05D007365 1.2e-137 493.4 288 78.8
Gohir.A06G099500 Gossypium hirsutum HOM05D005419 ORTHO05D007365 1.2e-137 493.4 292 79.1
TWI34G1484 Tripterygium wilfordii HOM05D005419 ORTHO05D007365 1.2e-137 493.4 290 79.3
Hma1.2p1_0974F.1_g243070 Hydrangea macrophylla HOM05D005419 ORTHO05D007365 1.5e-137 493.0 288 79.5
EL10Ac2g04167 Beta vulgaris HOM05D005419 ORTHO05D007365 2.6e-137 492.3 290 80.0
Manes.16G125000 Manihot esculenta HOM05D005419 ORTHO05D007365 2.6e-137 492.3 292 78.4
Ciclev10009082m.g Citrus clementina HOM05D005419 ORTHO05D007365 3.4e-137 491.9 292 79.1
MELO3C011274.2 Cucumis melo HOM05D005419 ORTHO05D007365 3.4e-137 491.9 292 78.8
QL02p020871 Quercus lobata HOM05D005419 ORTHO05D007365 3.4e-137 491.9 288 79.5
RcHm_v2.0_Chr6g0297381 Rosa chinensis HOM05D005419 ORTHO05D007365 3.4e-137 491.9 292 78.8
Gohir.D05G058700 Gossypium hirsutum HOM05D005419 ORTHO05D007365 4.5e-137 491.5 292 78.4
Gorai.009G059800 Gossypium raimondii HOM05D005419 ORTHO05D007365 4.5e-137 491.5 292 78.4
Thecc.09G020800 Theobroma cacao HOM05D005419 ORTHO05D007365 4.5e-137 491.5 294 78.9
ECA248G3461 Erigeron canadensis HOM05D005419 ORTHO05D007365 5.8e-137 491.1 288 79.9
Cfa013117 Carpinus fangiana HOM05D005419 ORTHO05D007365 7.6e-137 490.7 292 77.7
Gohir.D06G101700 Gossypium hirsutum HOM05D005419 ORTHO05D007365 7.6e-137 490.7 292 78.8
CSS0019044 Camellia sinensis var. sinensis HOM05D005419 ORTHO05D007365 1.7e-136 489.6 292 77.7
Eucgr.K02838 Eucalyptus grandis HOM05D005419 ORTHO05D007365 1.7e-136 489.6 292 77.7
Potri.018G023700 Populus trichocarpa HOM05D005419 ORTHO05D007365 2.2e-136 489.2 292 78.8
GSVIVG01035939001 Vitis vinifera HOM05D005419 ORTHO05D007365 3.8e-136 488.4 292 77.1
TAR383G1021 Trochodendron aralioides HOM05D005419 ORTHO05D007365 6.5e-136 487.6 290 77.2
Lj5g0012746 Lotus japonicus HOM05D005419 ORTHO05D007365 1.9e-135 486.1 286 78.7
Medtr1g012830 Medicago truncatula HOM05D005419 ORTHO05D007365 1.9e-135 486.1 286 78.7
DCAR_003104 Daucus carota HOM05D005419 ORTHO05D007365 5.5e-135 484.6 290 76.9
Peaxi162Scf00935g00015 Petunia axillaris HOM05D005419 ORTHO05D007365 5.5e-135 484.6 292 78.1
SalBow4G1212 Salvia bowleyana HOM05D005419 ORTHO05D007365 7.1e-135 484.2 292 78.8
Cc08_g00340 Coffea canephora HOM05D005419 ORTHO05D007365 1.2e-134 483.4 292 76.7
FvH4_2g28610 Fragaria vesca HOM05D005419 ORTHO05D007365 1.6e-134 483.0 292 77.7
FAN20G2331 Fragaria x ananassa HOM05D005419 ORTHO05D007365 1.6e-134 483.0 292 77.7
FAN24G2053 Fragaria x ananassa HOM05D005419 ORTHO05D007365 1.6e-134 483.0 292 77.7
TPR.G14021 Trifolium pratense HOM05D005419 ORTHO05D007365 2.1e-134 482.6 286 78.0
Ca_13036_v3 Cicer arietinum L. HOM05D005419 ORTHO05D007365 2.7e-134 482.3 286 77.6
Psat6g028000 Pisum sativum HOM05D005419 ORTHO05D007365 2.7e-134 482.3 286 78.0
Potri.006G258200 Populus trichocarpa HOM05D005419 ORTHO05D007365 2.7e-134 482.3 292 78.1
PSO210G4598 Papaver somniferum HOM05D005419 ORTHO05D007365 3.5e-134 481.9 287 77.7
Cpa.g.sc187.13 Carica papaya HOM05D005419 ORTHO05D007365 4.6e-134 481.5 288 78.1
Nn2g12192 Nelumbo nucifera HOM05D005419 ORTHO05D007365 4.6e-134 481.5 290 77.6
Actinidia14096 Actinidia chinensis HOM05D005419 ORTHO05D007365 6.0e-134 481.1 280 78.2
Lalb_Chr23g0268401 Lupinus albus HOM05D005419 ORTHO05D007365 7.9e-134 480.7 288 78.1
MSTRG.26021 Avicennia marina HOM05D005419 ORTHO05D007365 2.3e-133 479.2 288 77.4
HanXRQChr13g0387991 Helianthus annuus HOM05D005419 ORTHO05D007365 2.3e-133 479.2 288 77.8
Nitab4.5_0014723g0010 Nicotiana tabacum HOM05D005419 ORTHO05D007365 8.7e-133 477.2 292 77.1
AUR62012434 Chenopodium quinoa HOM05D005419 ORTHO05D007365 1.1e-132 476.9 290 76.6
Aqoxy7G03594 Aquilegia oxysepala HOM05D005419 ORTHO05D007365 1.5e-132 476.5 288 77.1
Sc09g0010330 Simmondsia chinensis HOM05D005419 ORTHO05D007365 4.3e-132 474.9 291 76.6
THA.LOC104815027 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 4.3e-132 474.9 287 76.3
Haze_21481 Corylus avellana HOM05D005419 ORTHO05D007365 1.3e-131 473.4 319 70.2
Solyc08g029110.3 Solanum lycopersicum HOM05D005419 ORTHO05D007365 1.3e-131 473.4 288 77.8
Sopen08g010000 Solanum pennellii HOM05D005419 ORTHO05D007365 1.3e-131 473.4 288 77.8
AUR62031558 Chenopodium quinoa HOM05D005419 ORTHO05D007365 2.1e-131 472.6 288 76.7
Migut.A00016 Erythranthe guttata HOM05D005419 ORTHO05D007365 4.8e-131 471.5 292 76.4
Os08g0299000 Oryza sativa ssp. japonica HOM05D005419 ORTHO05D007365 4.8e-131 471.5 288 75.7
CANSAT54G2335 Cannabis sativa HOM05D005419 ORTHO05D007365 5.3e-130 468.0 288 75.3
Lj8A726G39 Lonicera japonica HOM05D005419 ORTHO05D007365 6.9e-130 467.6 288 75.0
unitig_32.g10881 Utricularia gibba HOM05D005419 ORTHO05D007365 1.2e-129 466.8 288 74.3
FAN27G2423 Fragaria x ananassa HOM05D005419 ORTHO05D007365 7.6e-129 464.2 292 75.7
Nitab4.5_0007718g0040 Nicotiana tabacum HOM05D005419 ORTHO05D007365 1.7e-128 463.0 292 75.7
MBI15_g25765_MAGBIO Magnolia biondii HOM05D005419 ORTHO05D007365 6.5e-128 461.1 288 74.3
Prupe.1G484800 Prunus persica HOM05D005419 ORTHO05D007365 6.5e-128 461.1 273 79.5
Sed0006243 Sechium edule HOM05D005419 ORTHO05D007365 1.4e-127 459.9 288 74.0
Zm00001eb362830 Zea mays HOM05D005419 ORTHO05D007365 1.4e-127 459.9 288 75.7
SGA_v2.0_scaffold20G09092 Striga asiatica HOM05D005419 ORTHO05D007365 4.2e-127 458.4 288 75.3
CDE03G0272 Ceratophyllum demersum HOM05D005419 ORTHO05D007365 1.6e-126 456.4 290 72.4
Lsat_1_v5_gn_5_157921 Lactuca sativa HOM05D005419 ORTHO05D007365 6.1e-126 454.5 290 75.2
vmacro05161 Vaccinium macrocarpon HOM05D005419 ORTHO05D007365 6.1e-126 454.5 269 78.4
HPP92_000481 Vanilla planifolia HOM05D005419 ORTHO05D007365 6.1e-126 454.5 287 72.1
Sabra18G0026400 Salix brachista HOM05D005419 ORTHO05D007365 3.9e-125 451.8 269 78.4
FAN15G2739 Fragaria x ananassa HOM05D005419 ORTHO05D007365 1.9e-124 449.5 273 76.9
ClCG08G013470 Citrullus lanatus HOM05D005419 ORTHO05D007365 1.4e-122 443.4 313 70.0
COL.COLO4_18897 Corchorus olitorius HOM05D005419 ORTHO05D007365 2.4e-122 442.6 251 80.1
Rhsim12G0212900 Rhododendron simsii HOM05D005419 ORTHO05D007365 4.1e-122 441.8 292 72.6
Duzib168G1909 Durio zibethinus HOM05D005419 ORTHO05D007365 5.3e-122 441.4 292 72.3
ATR0767G069 Amborella trichopoda HOM05D005419 ORTHO05D007365 9.4e-119 430.6 269 73.6
Dinv18189 Davidia involucrata HOM05D005419 ORTHO05D007365 9.7e-116 420.6 292 69.9
Mapoly0065s0048 Marchantia polymorpha HOM05D005419 ORTHO05D007365 5.3e-114 414.8 283 66.4
Hund04483 Selenicereus undatus HOM05D005419 ORTHO05D007365 1.0e-112 410.6 310 63.5
Pp3c14_17280 Physcomitrium patens HOM05D005419 ORTHO05D007365 1.7e-112 409.8 281 66.2
SMO358G0334 Selaginella moellendorffii HOM05D005419 ORTHO05D007365 3.2e-111 405.6 288 65.3
MBI15_g36826_MAGBIO Magnolia biondii HOM05D005419 ORTHO05D007365 1.2e-110 403.7 269 71.7
Pp3c2_14390 Physcomitrium patens HOM05D005419 ORTHO05D007365 1.3e-107 393.7 266 67.3
CBR_g59364 Chara braunii HOM05D005419 ORTHO05D007365 2.2e-104 382.9 281 62.6
SEGI_34683 Sequoiadendron giganteum HOM05D005419 ORTHO05D007365 1.2e-102 377.1 271 62.7
SEGI_02513 Sequoiadendron giganteum HOM05D005419 ORTHO05D007365 4.2e-95 352.1 223 73.1
Rhsim07G0160700 Rhododendron simsii HOM05D005419 ORTHO05D007365 1.5e-84 317.0 304 54.6
Cre02.g096200 Chlamydomonas reinhardtii HOM05D005419 ORTHO05D007365 7.0e-82 308.1 285 49.8
THA.LOC104815144 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 6.6e-80 301.6 194 73.2
Oeu012280.1 Olea europaea HOM05D005419 ORTHO05D007365 1.1e-79 300.8 190 74.2
PRCOL_00000176 Prasinoderma coloniale HOM05D005419 ORTHO05D007365 7.3e-79 298.1 294 51.0
CAN.G75.9 Capsicum annuum HOM05D005419 ORTHO05D007365 6.1e-78 295.0 183 76.5
Sabra06G0201900 Salix brachista HOM05D005419 ORTHO05D007365 2.2e-75 286.6 173 78.6
MCO07G667 Micromonas commoda HOM05D005419 ORTHO05D007365 9.2e-74 281.2 290 50.0
AagrBONN_evm.TU.Sc2ySwM_368.1912 Anthoceros agrestis HOM05D005419 ORTHO05D007365 2.3e-72 276.6 188 67.0
Haze_26290 Corylus avellana HOM05D005419 ORTHO05D007365 5.8e-68 261.9 293 45.4
Lalb_Chr11g0063641 Lupinus albus HOM05D005419 ORTHO05D007365 1.5e-52 210.7 164 62.2
Cfa026845 Carpinus fangiana HOM05D005419 ORTHO05D007365 2.6e-52 209.9 310 41.0
FAN09G2129 Fragaria x ananassa HOM05D005419 ORTHO05D019206 3.2e-50 203.0 224 49.6
FAN28G2535 Fragaria x ananassa HOM05D005419 ORTHO05D019206 1.3e-48 197.6 224 48.7
Oeu012278.1 Olea europaea HOM05D005419 ORTHO05D007365 9.3e-42 174.9 114 69.3
FAN01G2683 Fragaria x ananassa HOM05D005419 ORTHO05D019206 2.3e-40 170.2 101 79.2
FAN02G2313 Fragaria x ananassa HOM05D005419 ORTHO05D019206 3.9e-40 169.5 102 77.5
FAN21G3387 Fragaria x ananassa HOM05D005419 ORTHO05D019206 2.4e-37 160.2 97 77.3
Os05g0310750 Oryza sativa ssp. japonica HOM05D005419 ORTHO05D019206 4.2e-26 122.9 74 77.0
FAN05G2233 Fragaria x ananassa HOM05D004769 ORTHO05D005605 8.2e-22 108.6 164 38.4
FAN16G2296 Fragaria x ananassa HOM05D005419 ORTHO05D019206 1.7e-19 100.9 97 56.7
MBI12_g19406_MAGBIO Magnolia biondii HOM05D005419 ORTHO05D242193 2.1e-09 67.4 51 62.7
Prupe.1G567700 Prunus persica HOM05D005419 ORTHO05D019206 9.7e-07 58.5 38 78.9


User provided reference genes

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