Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40816 Brassica carinata HOM05D004388 ORTHO05D005106 2.7e-59 231.9 124 100.0
C08p38090 Brassica napus HOM05D004388 ORTHO05D005106 2.7e-59 231.9 124 100.0
BolC8t51384H Brassica oleracea HOM05D004388 ORTHO05D005106 2.7e-59 231.9 124 100.0
A09p55160 Brassica napus HOM05D004388 ORTHO05D005106 2.3e-58 228.8 124 98.4
BraA09t40924Z Brassica rapa HOM05D004388 ORTHO05D005106 2.3e-58 228.8 124 98.4
Sp4g07480 Schrenkiella parvula HOM05D004388 ORTHO05D005106 1.2e-54 216.5 124 91.9
Thhalv10001257m.g Eutrema salsugineum HOM05D004388 ORTHO05D005106 5.8e-54 214.2 124 89.5
AT2G26500 Arabidopsis thaliana HOM05D004388 ORTHO05D005106 1.0e-50 203.4 123 86.2
BcaB01g03018 Brassica carinata HOM05D004388 ORTHO05D005106 1.3e-50 203.0 124 87.9
Carub.0004s0666 Capsella rubella HOM05D004388 ORTHO05D005106 2.3e-50 202.2 123 85.4
AL4G19340 Arabidopsis lyrata HOM05D004388 ORTHO05D005106 6.7e-50 200.7 123 84.6
CARHR118500 Cardamine hirsuta HOM05D004388 ORTHO05D005106 3.7e-48 194.9 124 83.9
Aa31LG5G9370 Aethionema arabicum HOM05D004388 ORTHO05D005106 2.5e-41 172.2 126 77.8
THA.LOC104803691 Tarenaya hassleriana HOM05D004388 ORTHO05D005106 7.9e-35 150.6 124 68.5
GSVIVG01009587001 Vitis vinifera HOM05D004388 ORTHO05D005106 4.1e-31 138.3 125 67.2
EL10Ac1g01755 Beta vulgaris HOM05D004388 ORTHO05D005106 2.6e-30 135.6 131 64.1
ECA236G2461 Erigeron canadensis HOM05D004388 ORTHO05D005106 5.9e-30 134.4 124 61.3
Cpa.g.sc64.17 Carica papaya HOM05D004388 ORTHO05D005106 7.7e-30 134.0 124 66.1
AUR62040093 Chenopodium quinoa HOM05D004388 ORTHO05D005106 1.0e-29 133.7 130 65.4
CiPaw.16G051700 Carya illinoinensis HOM05D004388 ORTHO05D005106 2.2e-29 132.5 105 67.6
AUR62033874 Chenopodium quinoa HOM05D004388 ORTHO05D005106 2.9e-29 132.1 130 64.6
Gohir.D01G173000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 2.9e-29 132.1 114 66.7
Hma1.2p1_1527F.1_g289065 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 2.9e-29 132.1 125 62.4
Peaxi162Scf00684g00563 Petunia axillaris HOM05D004388 ORTHO05D005106 5.0e-29 131.3 124 62.9
Glyma.07G163600 Glycine max HOM05D004388 ORTHO05D005106 8.5e-29 130.6 128 60.2
Gohir.D02G236000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 8.5e-29 130.6 125 64.0
Gorai.005G264100 Gossypium raimondii HOM05D004388 ORTHO05D005106 8.5e-29 130.6 125 64.0
Gohir.A01G181900 Gossypium hirsutum HOM05D004388 ORTHO05D005106 1.1e-28 130.2 114 64.9
Gorai.002G214600 Gossypium raimondii HOM05D004388 ORTHO05D005106 1.5e-28 129.8 128 62.5
Gohir.A03G214500 Gossypium hirsutum HOM05D004388 ORTHO05D005106 1.9e-28 129.4 125 62.4
TAR625G0696 Trochodendron aralioides HOM05D004388 ORTHO05D005106 2.5e-28 129.0 129 63.6
Thecc.02G028000 Theobroma cacao HOM05D004388 ORTHO05D005106 4.2e-28 128.3 126 61.1
Cfa018482 Carpinus fangiana HOM05D004388 ORTHO05D005106 5.5e-28 127.9 127 61.4
ClCG02G005540 Citrullus lanatus HOM05D004388 ORTHO05D005106 7.2e-28 127.5 129 62.8
DCAR_001610 Daucus carota HOM05D004388 ORTHO05D005106 7.2e-28 127.5 127 60.6
Duzib052G1120 Durio zibethinus HOM05D004388 ORTHO05D005106 7.2e-28 127.5 132 60.6
Hma1.2p1_0584F.1_g183220 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 7.2e-28 127.5 128 61.7
FvH4_1g27200 Fragaria vesca HOM05D004388 ORTHO05D005106 1.2e-27 126.7 129 64.3
Phvul.003G011200 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 1.2e-27 126.7 126 58.7
Medtr1g034260 Medicago truncatula HOM05D004388 ORTHO05D005106 1.6e-27 126.3 128 60.2
Ah.09g229630 Amaranthus hybridus HOM05D004388 ORTHO05D005106 2.1e-27 125.9 127 63.0
Ciclev10030439m.g Citrus clementina HOM05D004388 ORTHO05D005106 2.1e-27 125.9 128 59.4
DCAR_000094 Daucus carota HOM05D004388 ORTHO05D005106 2.1e-27 125.9 127 59.8
DCAR_029046 Daucus carota HOM05D004388 ORTHO05D005106 2.1e-27 125.9 127 59.8
FvH4_7g04430 Fragaria vesca HOM05D004388 ORTHO05D005106 2.7e-27 125.6 128 61.7
FAN06G3575 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.7e-27 125.6 128 61.7
Lsat_1_v5_gn_7_88020 Lactuca sativa HOM05D004388 ORTHO05D005106 2.7e-27 125.6 129 58.9
Nn5g29406 Nelumbo nucifera HOM05D004388 ORTHO05D005106 2.7e-27 125.6 128 58.6
QL03p018404 Quercus lobata HOM05D004388 ORTHO05D005106 2.7e-27 125.6 127 59.8
Thecc.08G017000 Theobroma cacao HOM05D004388 ORTHO05D005106 2.7e-27 125.6 130 60.0
Dinv36015 Davidia involucrata HOM05D004388 ORTHO05D005106 4.7e-27 124.8 127 62.2
Duzib248G0675 Durio zibethinus HOM05D004388 ORTHO05D005106 4.7e-27 124.8 100 69.0
FAN06G4461 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.7e-27 124.8 128 61.7
FAN19G2330 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.7e-27 124.8 129 63.6
CSS0016442 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 6.1e-27 124.4 125 62.4
CSS0020304 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 8.0e-27 124.0 125 62.4
FAN26G1198 Fragaria x ananassa HOM05D004388 ORTHO05D005106 8.0e-27 124.0 129 63.6
FAN28G0470 Fragaria x ananassa HOM05D004388 ORTHO05D005106 8.0e-27 124.0 129 63.6
QL11p039202 Quercus lobata HOM05D004388 ORTHO05D005106 8.0e-27 124.0 127 59.1
MELO3C018419.2 Cucumis melo HOM05D004388 ORTHO05D005106 1.0e-26 123.6 129 60.5
FAN15G0910 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.0e-26 123.6 127 60.6
TAR376G0986 Trochodendron aralioides HOM05D004388 ORTHO05D005106 1.0e-26 123.6 128 62.5
Cfa004944 Carpinus fangiana HOM05D004388 ORTHO05D005106 1.4e-26 123.2 96 71.9
Lalb_Chr11g0062471 Lupinus albus HOM05D004388 ORTHO05D005106 1.4e-26 123.2 114 60.5
VMungo1215G1405 Vigna mungo HOM05D004388 ORTHO05D005106 1.4e-26 123.2 126 57.9
Glyma.20G008600 Glycine max HOM05D004388 ORTHO05D005106 1.8e-26 122.9 130 58.5
Phvul.009G061900 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 1.8e-26 122.9 128 58.6
Sc15g0006590 Simmondsia chinensis HOM05D004388 ORTHO05D005106 1.8e-26 122.9 130 58.5
CiPaw.05G058500 Carya illinoinensis HOM05D004388 ORTHO05D005106 2.3e-26 122.5 128 59.4
Ca_12477_v3 Cicer arietinum L. HOM05D004388 ORTHO05D005106 2.3e-26 122.5 128 57.0
FAN03G2535 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.3e-26 122.5 127 61.4
FAN28G0922 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.3e-26 122.5 129 62.8
Atru.BG.71.p Acer truncatum HOM05D004388 ORTHO05D005106 3.0e-26 122.1 95 70.5
Oeu034076.1 Olea europaea HOM05D004388 ORTHO05D005106 3.0e-26 122.1 128 58.6
COL.COLO4_26416 Corchorus olitorius HOM05D004388 ORTHO05D005106 4.0e-26 121.7 128 59.4
FAN10G0172 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.0e-26 121.7 128 61.7
FAN23G2994 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.0e-26 121.7 129 62.8
FAN27G3490 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.0e-26 121.7 127 62.2
Manes.15G145400 Manihot esculenta HOM05D004388 ORTHO05D005106 4.0e-26 121.7 104 65.4
CSS0032006 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 5.2e-26 121.3 106 62.3
Gorai.010G015700 Gossypium raimondii HOM05D004388 ORTHO05D005106 6.7e-26 120.9 126 57.1
Glyma.04G035900 Glycine max HOM05D004388 ORTHO05D005106 8.8e-26 120.6 127 59.1
HanXRQChr16g0506081 Helianthus annuus HOM05D004388 ORTHO05D005106 8.8e-26 120.6 130 58.5
FvH4_2g07330 Fragaria vesca HOM05D004388 ORTHO05D005106 1.1e-25 120.2 127 60.6
FAN24G3543 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.1e-25 120.2 127 60.6
RcHm_v2.0_Chr3g0487591 Rosa chinensis HOM05D004388 ORTHO05D005106 1.1e-25 120.2 128 60.2
CAN.G322.84 Capsicum annuum HOM05D004388 ORTHO05D005106 1.5e-25 119.8 111 60.4
Cc02_g18220 Coffea canephora HOM05D004388 ORTHO05D005106 1.5e-25 119.8 128 57.8
COL.COLO4_17768 Corchorus olitorius HOM05D004388 ORTHO05D005106 1.5e-25 119.8 125 60.0
Nn6g32144 Nelumbo nucifera HOM05D004388 ORTHO05D005106 1.5e-25 119.8 130 57.7
Potri.009G108700 Populus trichocarpa HOM05D004388 ORTHO05D005106 1.5e-25 119.8 128 60.2
Sabra09G0082900 Salix brachista HOM05D004388 ORTHO05D005106 1.5e-25 119.8 128 60.2
Manes.05G168800 Manihot esculenta HOM05D004388 ORTHO05D005106 2.0e-25 119.4 128 60.2
HanXRQChr04g0128391 Helianthus annuus HOM05D004388 ORTHO05D005106 2.6e-25 119.0 98 69.4
MBI16_g31481_MAGBIO Magnolia biondii HOM05D004388 ORTHO05D005106 3.3e-25 118.6 103 63.1
Sabra14G0026600 Salix brachista HOM05D004388 ORTHO05D005106 3.3e-25 118.6 128 60.2
CsaV3_7G010090 Cucumis sativus L. HOM05D004388 ORTHO05D005106 4.4e-25 118.2 129 56.6
Duzib132G0841 Durio zibethinus HOM05D004388 ORTHO05D005106 4.4e-25 118.2 127 57.5
Duzib248G0127 Durio zibethinus HOM05D004388 ORTHO05D005106 4.4e-25 118.2 128 58.6
Lj1g0026402 Lotus japonicus HOM05D004388 ORTHO05D005106 5.7e-25 117.9 101 67.3
SalBow6G5992 Salvia bowleyana HOM05D004388 ORTHO05D005106 5.7e-25 117.9 96 70.8
TWI56G1138 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 5.7e-25 117.9 129 57.4
PSO170G0356 Papaver somniferum HOM05D004388 ORTHO05D005106 7.5e-25 117.5 124 58.1
Migut.B00292 Erythranthe guttata HOM05D004388 ORTHO05D005106 9.7e-25 117.1 126 57.9
Glyma.06G035900 Glycine max HOM05D004388 ORTHO05D005106 9.7e-25 117.1 128 59.4
Peaxi162Scf00016g01338 Petunia axillaris HOM05D004388 ORTHO05D005106 9.7e-25 117.1 119 58.0
Prupe.8G112900 Prunus persica HOM05D004388 ORTHO05D005106 9.7e-25 117.1 128 61.7
VMungo1309G1869 Vigna mungo HOM05D004388 ORTHO05D005106 9.7e-25 117.1 113 59.3
arahy.Tifrunner.gnm1.ann1.2I4SWN Arachis hypogaea HOM05D004388 ORTHO05D005106 1.3e-24 116.7 116 60.3
Duzib248G1645 Durio zibethinus HOM05D004388 ORTHO05D005106 1.3e-24 116.7 128 57.0
Lalb_Chr08g0245721 Lupinus albus HOM05D004388 ORTHO05D005106 1.3e-24 116.7 102 62.7
Nitab4.5_0001401g0180 Nicotiana tabacum HOM05D004388 ORTHO05D005106 1.3e-24 116.7 124 56.5
Potri.014G037000 Populus trichocarpa HOM05D004388 ORTHO05D005106 1.7e-24 116.3 128 59.4
Eucgr.G01518 Eucalyptus grandis HOM05D004388 ORTHO05D005106 2.2e-24 115.9 125 58.4
Nitab4.5_0008194g0060 Nicotiana tabacum HOM05D004388 ORTHO05D005106 2.2e-24 115.9 124 55.6
PGR042G3241 Punica granatum HOM05D004388 ORTHO05D005106 2.8e-24 115.5 120 58.3
Sopen10g022090 Solanum pennellii HOM05D004388 ORTHO05D005106 2.8e-24 115.5 98 67.3
PGSC0003DMG400006208 Solanum tuberosum HOM05D004388 ORTHO05D005106 3.7e-24 115.2 130 57.7
MD10G1086700 Malus domestica HOM05D004388 ORTHO05D005106 6.3e-24 114.4 104 64.4
unitig_0.g849 Utricularia gibba HOM05D004388 ORTHO05D005106 6.3e-24 114.4 107 58.9
MD05G1072400 Malus domestica HOM05D004388 ORTHO05D005106 8.2e-24 114.0 126 57.9
FAN20G1062 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.1e-23 113.6 96 66.7
Lalb_Chr10g0095391 Lupinus albus HOM05D004388 ORTHO05D005106 1.1e-23 113.6 123 56.1
PGSC0003DMG402025831 Solanum tuberosum HOM05D004388 ORTHO05D005106 1.1e-23 113.6 116 57.8
Sed0011034 Sechium edule HOM05D004388 ORTHO05D005106 1.4e-23 113.2 129 57.4
Aqoxy6G00936 Aquilegia oxysepala HOM05D004388 ORTHO05D005106 1.8e-23 112.8 124 59.7
Solyc01g109040.4 Solanum lycopersicum HOM05D004388 ORTHO05D005106 2.4e-23 112.5 116 56.9
Sopen01g051240 Solanum pennellii HOM05D004388 ORTHO05D005106 3.1e-23 112.1 116 56.0
CANSAT25G3863 Cannabis sativa HOM05D004388 ORTHO05D005106 4.1e-23 111.7 128 56.2
PSO541G0781 Papaver somniferum HOM05D004388 ORTHO05D005106 7.0e-23 110.9 92 68.5
TWI36G1636 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 1.6e-22 109.8 133 52.6
unitig_21.g20762 Utricularia gibba HOM05D004388 ORTHO05D005106 1.6e-22 109.8 123 55.3
Lalb_Chr01g0003011 Lupinus albus HOM05D004388 ORTHO05D005106 2.0e-22 109.4 95 66.3
Potri.004G147300 Populus trichocarpa HOM05D004388 ORTHO05D005106 2.0e-22 109.4 127 54.3
TWI12G0249 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 3.5e-22 108.6 131 55.7
arahy.Tifrunner.gnm1.ann1.RG9LRA Arachis hypogaea HOM05D004388 ORTHO05D005106 5.9e-22 107.8 101 62.4
ATR0733G197 Amborella trichopoda HOM05D004388 ORTHO05D005106 5.0e-21 104.8 105 58.1
MSTRG.20123 Avicennia marina HOM05D004388 ORTHO05D005106 5.0e-21 104.8 125 56.0
arahy.Tifrunner.gnm1.ann1.ISKM3Z Arachis hypogaea HOM05D004388 ORTHO05D005106 6.5e-21 104.4 100 61.0
unitig_744.g24243 Utricularia gibba HOM05D004388 ORTHO05D005106 4.2e-20 101.7 123 51.2
HPP92_017776 Vanilla planifolia HOM05D004388 ORTHO05D005106 9.4e-20 100.5 98 60.2
Psat6g097040 Pisum sativum HOM05D004388 ORTHO05D005106 2.1e-19 99.4 129 51.2
Os03g0765900 Oryza sativa ssp. japonica HOM05D004388 ORTHO05D005106 3.6e-19 98.6 95 60.0
BcaB08g35304 Brassica carinata HOM05D004388 ORTHO05D005106 6.1e-19 97.8 56 96.4
Pp3c5_10730 Physcomitrium patens HOM05D004388 ORTHO05D005106 1.8e-18 96.3 124 45.2
Pp3c6_20300 Physcomitrium patens HOM05D004388 ORTHO05D005106 4.0e-18 95.1 124 46.0
Eucgr.I01216 Eucalyptus grandis HOM05D004388 ORTHO05D005106 1.2e-17 93.6 108 51.9
TPR.G40836 Trifolium pratense HOM05D004388 ORTHO05D005106 9.8e-17 90.5 77 64.9
Zm00001eb214080 Zea mays HOM05D004388 ORTHO05D005106 1.3e-16 90.1 125 48.8
Zm00001eb058590 Zea mays HOM05D004388 ORTHO05D005106 1.7e-16 89.7 103 54.4
SGA_v2.0_scaffold58G20597 Striga asiatica HOM05D004388 ORTHO05D005106 6.3e-16 87.8 127 44.9
Actinidia00479 Actinidia chinensis HOM05D000395 ORTHO05D005106 1.1e-15 87.0 104 53.8
AagrBONN_evm.TU.Sc2ySwM_228.5818 Anthoceros agrestis HOM05D004388 ORTHO05D005106 2.0e-14 82.8 92 52.2
Potri.002G130000 Populus trichocarpa HOM05D004388 ORTHO05D005106 1.3e-13 80.1 107 51.4
SMO361G0239 Selaginella moellendorffii HOM05D004388 ORTHO05D005106 2.5e-12 75.9 90 46.7
Rhsim05G0079000 Rhododendron simsii HOM05D004388 ORTHO05D005106 3.2e-12 75.5 132 47.7
CDE01G0191 Ceratophyllum demersum HOM05D004388 ORTHO05D005106 7.2e-12 74.3 55 74.5
Mapoly0043s0110 Marchantia polymorpha HOM05D004388 ORTHO05D005106 9.4e-12 73.9 124 40.3
CBR_g48936 Chara braunii HOM05D004388 ORTHO05D005106 3.4e-09 65.5 106 38.7
Oeu010570.1 Olea europaea HOM05D000395 ORTHO05D000088 3.4e-09 65.5 76 55.3
Psat4g068600 Pisum sativum HOM05D004388 ORTHO05D005106 7.0e-07 57.8 109 44.0
GSVIVG01031853001 Vitis vinifera HOM05D008110 ORTHO05D005106 1.2e-06 57.0 72 45.8
SEGI_27588 Sequoiadendron giganteum HOM05D004388 ORTHO05D005106 2.0e-06 56.2 125 36.0


User provided reference genes

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