Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40762 Brassica carinata HOM05D005224 ORTHO05D006372 2.2e-44 181.8 84 100.0
BcaC07g42731 Brassica carinata HOM05D005224 ORTHO05D006372 2.2e-44 181.8 84 100.0
A09p54640 Brassica napus HOM05D005224 ORTHO05D006372 2.2e-44 181.8 84 100.0
C08p37540 Brassica napus HOM05D005224 ORTHO05D006372 2.2e-44 181.8 84 100.0
BraA09t40875Z Brassica rapa HOM05D005224 ORTHO05D006372 2.2e-44 181.8 84 100.0
Sp5g00730 Schrenkiella parvula HOM05D005224 ORTHO05D006372 2.2e-44 181.8 84 100.0
Thhalv10006347m.g Eutrema salsugineum HOM05D005224 ORTHO05D006372 6.3e-44 180.3 84 98.8
BcaB02g08753 Brassica carinata HOM05D005224 ORTHO05D006372 8.3e-44 179.9 84 98.8
BcaNung06420 Brassica carinata HOM05D005224 ORTHO05D006372 8.3e-44 179.9 84 98.8
AT3G62790 Arabidopsis thaliana HOM05D005224 ORTHO05D006372 1.4e-43 179.1 84 97.6
Carub.0005s2944 Capsella rubella HOM05D005224 ORTHO05D006372 1.4e-43 179.1 84 97.6
Sp4g29630 Schrenkiella parvula HOM05D005224 ORTHO05D006372 4.1e-43 177.6 84 97.6
Thhalv10001702m.g Eutrema salsugineum HOM05D005224 ORTHO05D006372 9.2e-43 176.4 84 96.4
AL5G45570 Arabidopsis lyrata HOM05D005224 ORTHO05D006372 1.2e-42 176.0 84 96.4
CARHR173060 Cardamine hirsuta HOM05D005224 ORTHO05D006372 1.6e-42 175.6 84 96.4
AT2G47690 Arabidopsis thaliana HOM05D005224 ORTHO05D006372 2.0e-42 175.3 84 95.2
BraA05t19024Z Brassica rapa HOM05D005224 ORTHO05D006372 2.0e-42 175.3 84 96.4
CARHR143080 Cardamine hirsuta HOM05D005224 ORTHO05D006372 2.7e-42 174.9 84 96.4
BcaC02g12549 Brassica carinata HOM05D005224 ORTHO05D006372 5.9e-42 173.7 84 95.2
C04p00180 Brassica napus HOM05D005224 ORTHO05D006372 5.9e-42 173.7 84 95.2
BolC4t21665H Brassica oleracea HOM05D005224 ORTHO05D006372 5.9e-42 173.7 84 95.2
AL4G47260 Arabidopsis lyrata HOM05D005224 ORTHO05D006372 1.0e-41 172.9 84 95.2
Aa31LG1G29010 Aethionema arabicum HOM05D005224 ORTHO05D006372 2.3e-41 171.8 84 94.0
A05p00270 Brassica napus HOM05D005224 ORTHO05D006372 5.0e-41 170.6 84 92.9
Carub.0004s3041 Capsella rubella HOM05D005224 ORTHO05D006372 6.6e-41 170.2 84 92.9
A07p26090 Brassica napus HOM05D005224 ORTHO05D006372 4.3e-40 167.5 82 95.1
BcaB02g07318 Brassica carinata HOM05D005224 ORTHO05D006372 2.1e-39 165.2 81 95.1
THA.LOC104817499 Tarenaya hassleriana HOM05D005224 ORTHO05D006372 2.1e-39 165.2 84 90.5
BolC6t38010H Brassica oleracea HOM05D005224 ORTHO05D006372 4.7e-39 164.1 82 92.7
Manes.05G062300 Manihot esculenta HOM05D005224 ORTHO05D006372 1.8e-38 162.2 83 86.7
Cfa005919 Carpinus fangiana HOM05D005224 ORTHO05D006372 2.3e-38 161.8 83 88.0
Haze_04931 Corylus avellana HOM05D005224 ORTHO05D006372 3.0e-38 161.4 83 88.0
C06p28410 Brassica napus HOM05D005224 ORTHO05D006372 5.2e-38 160.6 80 93.8
vmacro03691 Vaccinium macrocarpon HOM05D005224 ORTHO05D006372 5.2e-38 160.6 83 90.4
Glyma.03G214500 Glycine max HOM05D005224 ORTHO05D006372 6.8e-38 160.2 82 90.2
TWI14G1007 Tripterygium wilfordii HOM05D005224 ORTHO05D006372 2.0e-37 158.7 84 86.9
Glyma.19G211200 Glycine max HOM05D005224 ORTHO05D006372 4.4e-37 157.5 82 87.8
TWI23G0618 Tripterygium wilfordii HOM05D005224 ORTHO05D006372 9.8e-37 156.4 84 84.5
Psat3g022120 Pisum sativum HOM05D005224 ORTHO05D006372 2.2e-36 155.2 82 86.6
CSS0034435 Camellia sinensis var. sinensis HOM05D005224 ORTHO05D006372 3.7e-36 154.5 77 89.6
Lj1g0012977 Lotus japonicus HOM05D005224 ORTHO05D006372 3.7e-36 154.5 82 86.6
Eucgr.K03475 Eucalyptus grandis HOM05D005224 ORTHO05D006372 4.9e-36 154.1 83 86.7
Gohir.A08G075800 Gossypium hirsutum HOM05D005224 ORTHO05D006372 8.3e-36 153.3 82 84.1
Gohir.D08G085200 Gossypium hirsutum HOM05D005224 ORTHO05D006372 8.3e-36 153.3 82 84.1
Gorai.004G089700 Gossypium raimondii HOM05D005224 ORTHO05D006372 8.3e-36 153.3 82 84.1
Phvul.001G207200 Phaseolus vulgaris HOM05D005224 ORTHO05D006372 8.3e-36 153.3 82 84.1
TPR.G9599 Trifolium pratense HOM05D005224 ORTHO05D006372 8.3e-36 153.3 82 85.4
Potri.014G129600 Populus trichocarpa HOM05D005224 ORTHO05D006372 1.1e-35 152.9 84 85.7
CDE09G0321 Ceratophyllum demersum HOM05D005224 ORTHO05D006372 1.4e-35 152.5 85 84.7
Duzib211G0376 Durio zibethinus HOM05D005224 ORTHO05D006372 1.4e-35 152.5 82 85.4
Lalb_Chr04g0259841 Lupinus albus HOM05D005224 ORTHO05D006372 1.4e-35 152.5 84 85.7
PGR042G0105 Punica granatum HOM05D005224 ORTHO05D006372 1.4e-35 152.5 83 86.7
Thecc.01G299700 Theobroma cacao HOM05D005224 ORTHO05D006372 1.4e-35 152.5 82 85.4
Medtr7g108810 Medicago truncatula HOM05D001413 ORTHO05D001385 1.8e-35 152.1 83 83.1
Cc04_g11150 Coffea canephora HOM05D005224 ORTHO05D006372 2.4e-35 151.8 84 84.5
CANSAT25G2283 Cannabis sativa HOM05D005224 ORTHO05D006372 3.2e-35 151.4 83 84.3
Gohir.A12G130700 Gossypium hirsutum HOM05D005224 ORTHO05D006372 3.2e-35 151.4 82 84.1
Gohir.D12G134600 Gossypium hirsutum HOM05D005224 ORTHO05D006372 3.2e-35 151.4 82 84.1
Gorai.008G145500 Gossypium raimondii HOM05D005224 ORTHO05D006372 3.2e-35 151.4 82 84.1
Cpa.g.sc19.280 Carica papaya HOM05D005224 ORTHO05D006372 5.4e-35 150.6 84 82.1
Manes.01G218400 Manihot esculenta HOM05D005224 ORTHO05D006372 5.4e-35 150.6 83 81.9
HPP92_017223 Vanilla planifolia HOM05D005224 ORTHO05D006372 5.4e-35 150.6 86 80.2
Dinv44366 Davidia involucrata HOM05D005224 ORTHO05D006372 7.0e-35 150.2 84 82.1
Duzib133G0273 Durio zibethinus HOM05D005224 ORTHO05D006372 7.0e-35 150.2 82 84.1
RcHm_v2.0_Chr6g0293941 Rosa chinensis HOM05D005224 ORTHO05D006372 7.0e-35 150.2 83 85.5
HanXRQChr06g0173941 Helianthus annuus HOM05D005224 ORTHO05D006372 9.2e-35 149.8 85 82.4
Actinidia24346 Actinidia chinensis HOM05D001413 ORTHO05D001385 1.2e-34 149.4 74 90.5
EL10Ac3g05917 Beta vulgaris HOM05D005224 ORTHO05D006372 1.2e-34 149.4 84 81.0
FvH4_2g25680 Fragaria vesca HOM05D005224 ORTHO05D006372 1.2e-34 149.4 83 84.3
FAN15G2088 Fragaria x ananassa HOM05D005224 ORTHO05D006372 1.2e-34 149.4 83 84.3
FAN20G0551 Fragaria x ananassa HOM05D005224 ORTHO05D006372 1.2e-34 149.4 83 84.3
FAN27G2170 Fragaria x ananassa HOM05D005224 ORTHO05D006372 1.2e-34 149.4 83 84.3
ECA246G3542 Erigeron canadensis HOM05D005224 ORTHO05D006372 1.6e-34 149.1 85 82.4
Lalb_Chr15g0078521 Lupinus albus HOM05D005224 ORTHO05D006372 2.0e-34 148.7 82 82.9
TAR365G0183 Trochodendron aralioides HOM05D005224 ORTHO05D006372 2.0e-34 148.7 82 81.7
Ciclev10033216m.g Citrus clementina HOM05D005224 ORTHO05D006372 2.7e-34 148.3 82 85.4
DCAR_027069 Daucus carota HOM05D005224 ORTHO05D006372 2.7e-34 148.3 83 84.3
Gohir.A08G042400 Gossypium hirsutum HOM05D005224 ORTHO05D006372 2.7e-34 148.3 83 84.3
Gohir.D08G052200 Gossypium hirsutum HOM05D005224 ORTHO05D006372 2.7e-34 148.3 83 84.3
Gorai.004G052300 Gossypium raimondii HOM05D005224 ORTHO05D006372 2.7e-34 148.3 83 84.3
MD03G1287600 Malus domestica HOM05D005224 ORTHO05D006372 2.7e-34 148.3 83 83.1
Nn4g25791 Nelumbo nucifera HOM05D005224 ORTHO05D006372 2.7e-34 148.3 76 85.5
Sed0019318 Sechium edule HOM05D005224 ORTHO05D006372 2.7e-34 148.3 82 82.9
CDE02G3260 Ceratophyllum demersum HOM05D005224 ORTHO05D006372 3.5e-34 147.9 85 82.4
Hma1.2p1_1185F.1_g264980 Hydrangea macrophylla HOM05D005224 ORTHO05D006372 3.5e-34 147.9 81 82.7
Dinv29760 Davidia involucrata HOM05D005224 ORTHO05D006372 4.6e-34 147.5 84 81.0
HanXRQChr17g0538761 Helianthus annuus HOM05D005224 ORTHO05D006372 4.6e-34 147.5 84 82.1
Lsat_1_v5_gn_3_24761 Lactuca sativa HOM05D005224 ORTHO05D006372 4.6e-34 147.5 85 82.4
PSO210G2815 Papaver somniferum HOM05D005224 ORTHO05D006372 4.6e-34 147.5 85 81.2
PSO832G3231 Papaver somniferum HOM05D005224 ORTHO05D006372 4.6e-34 147.5 85 81.2
Potri.002G204800 Populus trichocarpa HOM05D005224 ORTHO05D006372 4.6e-34 147.5 87 82.8
arahy.Tifrunner.gnm1.ann1.8KN71Z Arachis hypogaea HOM05D005224 ORTHO05D006372 5.9e-34 147.1 84 82.1
arahy.Tifrunner.gnm1.ann1.EEQ3S4 Arachis hypogaea HOM05D005224 ORTHO05D006372 5.9e-34 147.1 84 82.1
arahy.Tifrunner.gnm1.ann1.U5VDRT Arachis hypogaea HOM05D005224 ORTHO05D006372 5.9e-34 147.1 84 82.1
ClCG10G010880 Citrullus lanatus HOM05D005224 ORTHO05D006372 5.9e-34 147.1 82 84.1
Prupe.8G260800 Prunus persica HOM05D005224 ORTHO05D006372 5.9e-34 147.1 83 81.9
Sed0018249 Sechium edule HOM05D005224 ORTHO05D006372 5.9e-34 147.1 82 84.1
Hund11874 Selenicereus undatus HOM05D005224 ORTHO05D006372 5.9e-34 147.1 84 81.0
GSVIVG01035146001 Vitis vinifera HOM05D005224 ORTHO05D006372 5.9e-34 147.1 85 82.4
QL12p028550 Quercus lobata HOM05D005224 ORTHO05D006372 7.8e-34 146.7 83 79.5
Ah.02g128370 Amaranthus hybridus HOM05D005224 ORTHO05D006372 1.3e-33 146.0 84 79.8
unitig_0.g663 Utricularia gibba HOM05D005224 ORTHO05D006372 1.3e-33 146.0 82 79.3
CsaV3_4G000760 Cucumis sativus L. HOM05D005224 ORTHO05D006372 1.7e-33 145.6 82 82.9
ATR0796G245 Amborella trichopoda HOM05D005224 ORTHO05D006372 2.3e-33 145.2 80 80.0
Sc25g0004000 Simmondsia chinensis HOM05D005224 ORTHO05D006372 2.3e-33 145.2 102 68.6
Migut.D00213 Erythranthe guttata HOM05D005224 ORTHO05D006372 5.0e-33 144.1 84 79.8
MBI18_g06871_MAGBIO Magnolia biondii HOM05D005224 ORTHO05D006372 5.0e-33 144.1 71 90.1
Actinidia32220 Actinidia chinensis HOM05D005224 ORTHO05D006372 6.6e-33 143.7 84 78.6
Aqoxy2G02950 Aquilegia oxysepala HOM05D005224 ORTHO05D006372 6.6e-33 143.7 81 79.0
Nitab4.5_0011375g0020 Nicotiana tabacum HOM05D005224 ORTHO05D006372 8.6e-33 143.3 84 79.8
Os08g0556600 Oryza sativa ssp. japonica HOM05D005224 ORTHO05D006372 1.1e-32 142.9 74 87.8
Zm00001eb039670 Zea mays HOM05D005224 ORTHO05D006372 1.1e-32 142.9 87 75.9
MELO3C017960.2 Cucumis melo HOM05D005224 ORTHO05D006372 1.5e-32 142.5 83 80.7
Migut.D02475 Erythranthe guttata HOM05D005224 ORTHO05D006372 1.5e-32 142.5 84 78.6
PSO210G7006 Papaver somniferum HOM05D005224 ORTHO05D006372 1.5e-32 142.5 87 79.3
CiPaw.07G108200 Carya illinoinensis HOM05D005224 ORTHO05D006372 2.5e-32 141.7 83 77.1
COL.COLO4_23352 Corchorus olitorius HOM05D005224 ORTHO05D006372 4.3e-32 141.0 104 68.3
PSO170G2085 Papaver somniferum HOM05D005224 ORTHO05D006372 4.3e-32 141.0 87 78.2
Peaxi162Scf00589g00224 Petunia axillaris HOM05D005224 ORTHO05D006372 2.8e-31 138.3 65 93.8
TAR370G0003 Trochodendron aralioides HOM05D005224 ORTHO05D006372 5.2e-30 134.0 63 93.7
Nitab4.5_0000805g0100 Nicotiana tabacum HOM05D005224 ORTHO05D006372 1.2e-29 132.9 61 95.1
Solyc11g005880.2 Solanum lycopersicum HOM05D005224 ORTHO05D006372 1.5e-29 132.5 62 93.5
Sopen11g001830 Solanum pennellii HOM05D005224 ORTHO05D006372 1.5e-29 132.5 62 93.5
CAN.G652.1 Capsicum annuum HOM05D005224 ORTHO05D006372 4.4e-29 131.0 60 95.0
PGSC0003DMG400028681 Solanum tuberosum HOM05D005224 ORTHO05D006372 5.8e-29 130.6 61 93.4
ECA240G1836 Erigeron canadensis HOM05D002891 ORTHO05D003369 7.5e-29 130.2 77 79.2
BcaC08g45239 Brassica carinata HOM05D005224 ORTHO05D006372 9.8e-29 129.8 57 98.2
SalBow3G4056 Salvia bowleyana HOM05D005224 ORTHO05D006372 3.7e-28 127.9 96 65.6
SHI19781 Sapria himalayana HOM05D005224 ORTHO05D006372 1.9e-27 125.6 70 78.6
BraA07t30257Z Brassica rapa HOM05D005224 ORTHO05D006372 3.0e-25 118.2 50 100.0
HanXRQChr08g0223921 Helianthus annuus HOM05D005224 ORTHO05D006372 4.3e-24 114.4 50 98.0
TAR633G1838 Trochodendron aralioides HOM05D005224 ORTHO05D006372 1.2e-23 112.8 63 81.0
Oeu054123.1 Olea europaea HOM05D005224 ORTHO05D006372 1.6e-23 112.5 50 94.0
HanXRQChr09g0263651 Helianthus annuus HOM05D005224 ORTHO05D006372 6.2e-23 110.5 50 94.0
MD02G1095800 Malus domestica HOM05D005224 ORTHO05D006372 7.5e-21 103.6 49 87.8
CBR_g52287 Chara braunii HOM05D005224 ORTHO05D006372 1.7e-20 102.4 77 62.3
CiPaw.08G095500 Carya illinoinensis HOM05D005224 ORTHO05D006372 3.7e-20 101.3 59 83.1
Pp3c7_20680 Physcomitrium patens HOM05D005224 ORTHO05D006372 3.2e-19 98.2 64 64.1
Pp3c11_13470 Physcomitrium patens HOM05D005224 ORTHO05D006372 4.1e-19 97.8 84 56.0
AagrBONN_evm.TU.Sc2ySwM_344.1353 Anthoceros agrestis HOM05D005224 ORTHO05D006372 1.6e-18 95.9 84 54.8
Mapoly0155s0025 Marchantia polymorpha HOM05D005224 ORTHO05D006372 1.6e-18 95.9 80 58.8
MCO16G429 Micromonas commoda HOM05D005224 ORTHO05D006372 2.9e-12 75.1 63 50.8
arahy.Tifrunner.gnm1.ann1.YEW5FF Arachis hypogaea HOM05D005224 ORTHO05D006372 2.8e-07 58.5 29 86.2
AUR62015428 Chenopodium quinoa HOM05D005224 ORTHO05D006372 4.0e-06 54.7 23 91.3


User provided reference genes

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