Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p37370 Brassica napus HOM05D012658 ORTHO05D010583 1.1e-185 653.3 376 100.0
BolC8t51315H Brassica oleracea HOM05D012658 ORTHO05D010583 1.0e-181 640.2 376 97.3
BcaC07g40736 Brassica carinata HOM05D012658 ORTHO05D010583 7.8e-142 507.7 376 82.2
A09p54480 Brassica napus HOM05D012658 ORTHO05D010583 8.3e-128 461.1 378 79.4
BraA09t40861Z Brassica rapa HOM05D012658 ORTHO05D010583 7.8e-126 454.5 378 78.3
Thhalv10006051m.g Eutrema salsugineum HOM05D012658 ORTHO05D010583 2.2e-88 330.1 395 55.9
AL5G45370 Arabidopsis lyrata HOM05D012658 ORTHO05D010583 6.7e-85 318.5 390 53.3
Carub.0005s2928 Capsella rubella HOM05D012658 ORTHO05D010583 3.2e-79 299.7 398 50.0
BcaC07g40779 Brassica carinata HOM05D012658 ORTHO05D010583 7.9e-78 295.0 288 65.6
CARHR172890 Cardamine hirsuta HOM05D012658 ORTHO05D010583 2.0e-73 280.4 386 52.8
A05p34600 Brassica napus HOM05D012658 ORTHO05D010583 4.1e-58 229.6 136 89.7
AT3G62620 Arabidopsis thaliana HOM05D012658 ORTHO05D010583 7.7e-41 172.2 145 65.5
THA.LOC104817467 Tarenaya hassleriana HOM05D012658 ORTHO05D010583 6.8e-29 132.5 135 51.1
Dinv10074 Davidia involucrata HOM05D008757 ORTHO05D010583 1.9e-18 97.8 137 39.4
Rhsim01G0289500 Rhododendron simsii HOM05D008757 ORTHO05D010583 1.6e-17 94.7 132 39.4
Hma1.2p1_1302F.1_g274300 Hydrangea macrophylla HOM05D008757 ORTHO05D010583 2.7e-17 94.0 137 37.2
Gohir.A11G110800 Gossypium hirsutum HOM05D008757 ORTHO05D010583 3.5e-17 93.6 132 37.9
COL.COLO4_23259 Corchorus olitorius HOM05D002981 ORTHO05D003725 6.0e-17 92.8 132 39.4
vmacro15123 Vaccinium macrocarpon HOM05D008757 ORTHO05D010583 1.0e-16 92.0 132 39.4
Migut.D00097 Erythranthe guttata HOM05D008757 ORTHO05D010583 1.7e-16 91.3 133 39.1
CSS0028194 Camellia sinensis var. sinensis HOM05D008757 ORTHO05D010583 2.3e-16 90.9 138 41.3
CSS0009821 Camellia sinensis var. sinensis HOM05D008757 ORTHO05D010583 3.0e-16 90.5 138 41.3
FvH4_5g39560 Fragaria vesca HOM05D008757 ORTHO05D010583 3.9e-16 90.1 128 39.1
FAN18G1448 Fragaria x ananassa HOM05D008757 ORTHO05D010583 3.9e-16 90.1 128 39.1
Gohir.D11G115900 Gossypium hirsutum HOM05D008757 ORTHO05D010583 3.9e-16 90.1 131 36.6
FAN13G0940 Fragaria x ananassa HOM05D008757 ORTHO05D010583 6.6e-16 89.4 128 39.1
FAN08G1681 Fragaria x ananassa HOM05D008757 ORTHO05D010583 8.6e-16 89.0 128 38.3
Cfa005830 Carpinus fangiana HOM05D008757 ORTHO05D010583 2.5e-15 87.4 352 26.1
Sabra02G0159400 Salix brachista HOM05D008757 ORTHO05D010583 9.5e-15 85.5 137 34.3
FAN04G1474 Fragaria x ananassa HOM05D008757 ORTHO05D010583 1.6e-14 84.7 128 38.3
Potri.002G198200 Populus trichocarpa HOM05D008757 ORTHO05D010583 1.6e-14 84.7 137 33.6
RcHm_v2.0_Chr7g0241871 Rosa chinensis HOM05D008757 ORTHO05D010583 2.1e-14 84.3 127 36.2
MD11G1316900 Malus domestica HOM05D008757 ORTHO05D010583 8.1e-14 82.4 171 35.1
SGA_v2.0_scaffold334G49056 Striga asiatica HOM05D008757 ORTHO05D010583 2.3e-13 80.9 131 33.6
Lj1A19T23 Lonicera japonica HOM05D008757 ORTHO05D010583 4.0e-13 80.1 130 32.3
Actinidia25837 Actinidia chinensis HOM05D008757 ORTHO05D010583 8.9e-13 79.0 124 36.3
TAR365G0134 Trochodendron aralioides HOM05D008757 ORTHO05D010583 2.0e-12 77.8 128 34.4
MSTRG.18114 Avicennia marina HOM05D008757 ORTHO05D010583 2.6e-12 77.4 138 33.3
TWI18G1222 Tripterygium wilfordii HOM05D008757 ORTHO05D010583 2.6e-12 77.4 139 33.8
Nitab4.5_0000116g0030 Nicotiana tabacum HOM05D008757 ORTHO05D010583 9.8e-12 75.5 137 37.2
Haze_05014 Corylus avellana HOM05D008757 ORTHO05D010583 1.7e-11 74.7 133 33.8
Prupe.8G269900 Prunus persica HOM05D008757 ORTHO05D010583 1.7e-11 74.7 179 31.3
DCAR_012364 Daucus carota HOM05D008757 ORTHO05D010583 3.7e-11 73.6 125 31.2
Nitab4.5_0000906g0100 Nicotiana tabacum HOM05D008757 ORTHO05D010583 1.1e-10 72.0 137 35.8
Peaxi162Scf00001g00251 Petunia axillaris HOM05D008757 ORTHO05D010583 1.4e-10 71.6 137 32.8
GSVIVG01028089001 Vitis vinifera HOM05D008757 ORTHO05D010583 1.4e-10 71.6 203 30.5
ATR0706G029 Amborella trichopoda HOM05D008757 ORTHO05D010583 1.2e-09 68.6 166 30.7
Solyc01g079630.3 Solanum lycopersicum HOM05D008757 ORTHO05D010583 2.1e-09 67.8 147 33.3
Sopen01g031410 Solanum pennellii HOM05D008757 ORTHO05D010583 2.1e-09 67.8 147 33.3
Gorai.007G124100 Gossypium raimondii HOM05D008757 ORTHO05D010583 1.0e-08 65.5 71 43.7
QL12p028983 Quercus lobata HOM05D008757 ORTHO05D010583 1.7e-08 64.7 132 31.8
SEGI_31757 Sequoiadendron giganteum HOM05D008757 ORTHO05D010583 1.1e-07 62.0 127 26.8
Thecc.01G310700 Theobroma cacao HOM05D008757 ORTHO05D010583 4.3e-07 60.1 76 38.2


User provided reference genes

Program Settings