Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p37040 Brassica napus HOM05D006834 ORTHO05D008623 3.5e-231 804.7 424 100.0
BolC8t51281H Brassica oleracea HOM05D006834 ORTHO05D008623 1.0e-227 793.1 424 98.6
A09p54180 Brassica napus HOM05D006834 ORTHO05D008623 2.0e-226 788.9 424 97.6
BraA09t40830Z Brassica rapa HOM05D006834 ORTHO05D008623 1.8e-224 782.3 424 97.4
BcaC07g40700 Brassica carinata HOM05D006834 ORTHO05D008623 2.7e-215 751.9 424 95.0
Sp5g01290 Schrenkiella parvula HOM05D006834 ORTHO05D008623 4.9e-209 731.1 424 88.9
Thhalv10005996m.g Eutrema salsugineum HOM05D006834 ORTHO05D008623 1.5e-202 709.5 424 87.3
AL5G44760 Arabidopsis lyrata HOM05D006834 ORTHO05D008623 3.5e-199 698.4 424 84.7
CARHR172420 Cardamine hirsuta HOM05D006834 ORTHO05D008623 1.7e-198 696.0 424 84.2
AT3G62080 Arabidopsis thaliana HOM05D006834 ORTHO05D008623 2.5e-197 692.2 424 84.4
AL5G44880 Arabidopsis lyrata HOM05D006834 ORTHO05D008623 2.2e-193 679.1 424 83.3
Carub.0005s2883 Capsella rubella HOM05D006834 ORTHO05D008623 1.1e-192 676.8 424 82.5
Aa31LG10G16050 Aethionema arabicum HOM05D006834 ORTHO05D008623 1.4e-187 659.8 424 79.7
THA.LOC104817424 Tarenaya hassleriana HOM05D006834 ORTHO05D008623 1.5e-141 506.9 427 63.5
Atru.chr5.848 Acer truncatum HOM05D006834 ORTHO05D008623 2.0e-130 469.9 439 57.4
Thecc.01G326600 Theobroma cacao HOM05D006834 ORTHO05D008623 1.2e-127 460.7 433 57.0
Cpa.g.sc57.31 Carica papaya HOM05D006834 ORTHO05D008623 2.6e-125 453.0 431 57.1
Sabra02G0148600 Salix brachista HOM05D006834 ORTHO05D008623 1.1e-123 447.6 433 55.7
PGR042G0322 Punica granatum HOM05D006834 ORTHO05D008623 1.2e-122 444.1 432 55.3
TWI59G0932 Tripterygium wilfordii HOM05D006834 ORTHO05D008623 1.2e-122 444.1 409 58.2
TWI14G0919 Tripterygium wilfordii HOM05D006834 ORTHO05D008623 5.9e-122 441.8 437 56.1
Eucgr.A00997 Eucalyptus grandis HOM05D006834 ORTHO05D008623 7.7e-122 441.4 404 58.2
Duzib138G0585 Durio zibethinus HOM05D006834 ORTHO05D008623 2.2e-121 439.9 434 56.5
Gorai.008G133900 Gossypium raimondii HOM05D006834 ORTHO05D008623 2.9e-121 439.5 371 61.2
Potri.002G186100 Populus trichocarpa HOM05D006834 ORTHO05D008623 2.9e-121 439.5 438 54.3
Gohir.A12G119200 Gossypium hirsutum HOM05D006834 ORTHO05D008623 5.0e-121 438.7 434 55.1
GSVIVG01028237001 Vitis vinifera HOM05D006834 ORTHO05D008623 8.5e-121 438.0 411 56.7
CSS0011680 Camellia sinensis var. sinensis HOM05D006834 ORTHO05D008623 1.5e-120 437.2 373 61.4
QL12p035081 Quercus lobata HOM05D006834 ORTHO05D008623 7.2e-120 434.9 432 54.2
QL12p035100 Quercus lobata HOM05D006834 ORTHO05D008623 7.2e-120 434.9 432 54.2
TPR.G8370 Trifolium pratense HOM05D006834 ORTHO05D008623 9.4e-120 434.5 409 55.5
Psat3g017400 Pisum sativum HOM05D006834 ORTHO05D008623 2.1e-119 433.3 408 56.6
Medtr7g110820 Medicago truncatula HOM05D006834 ORTHO05D008623 1.5e-117 427.2 404 54.7
Phvul.001G218900 Phaseolus vulgaris HOM05D006834 ORTHO05D008623 4.4e-117 425.6 407 55.3
Ciclev10020225m.g Citrus clementina HOM05D006834 ORTHO05D008623 9.7e-117 424.5 434 53.9
Dinv12076 Davidia involucrata HOM05D006834 ORTHO05D008623 9.7e-117 424.5 381 59.3
Lalb_Chr18g0046351 Lupinus albus HOM05D006834 ORTHO05D008623 3.7e-116 422.5 416 54.1
Cfa004921 Carpinus fangiana HOM05D006834 ORTHO05D008623 1.1e-115 421.0 420 55.2
Lj1g0008019 Lotus japonicus HOM05D006834 ORTHO05D008623 4.1e-115 419.1 406 54.9
Glyma.19G222100 Glycine max HOM05D006834 ORTHO05D008623 1.6e-114 417.2 402 55.5
TAR636G0448 Trochodendron aralioides HOM05D006834 ORTHO05D008623 7.7e-114 414.8 410 56.1
VMungo1383G1632 Vigna mungo HOM05D006834 ORTHO05D008623 1.3e-113 414.1 402 55.0
Nn4g25303 Nelumbo nucifera HOM05D006834 ORTHO05D008623 1.7e-113 413.7 412 55.8
MBI18_g03845_MAGBIO Magnolia biondii HOM05D006834 ORTHO05D008623 5.0e-113 412.1 385 57.4
vmacro15952 Vaccinium macrocarpon HOM05D006834 ORTHO05D008623 3.2e-112 409.5 424 52.1
Actinidia21334 Actinidia chinensis HOM05D006834 ORTHO05D008623 4.2e-112 409.1 375 56.3
PSO210G3353 Papaver somniferum HOM05D006834 ORTHO05D008623 2.7e-111 406.4 406 55.4
CiPaw.08G082000 Carya illinoinensis HOM05D006834 ORTHO05D008623 1.0e-110 404.4 440 53.2
CANSAT25G0194 Cannabis sativa HOM05D006834 ORTHO05D008623 1.8e-110 403.7 407 53.1
PSO761G0283 Papaver somniferum HOM05D006834 ORTHO05D008623 2.3e-110 403.3 400 55.2
Rhsim01G0000800 Rhododendron simsii HOM05D006834 ORTHO05D008623 2.0e-109 400.2 425 51.1
Sed0016094 Sechium edule HOM05D006834 ORTHO05D008623 7.5e-109 398.3 435 50.1
CsaV3_5G017580 Cucumis sativus L. HOM05D006834 ORTHO05D008623 3.7e-108 396.0 414 51.7
MD09G1291400 Malus domestica HOM05D006834 ORTHO05D008623 3.7e-108 396.0 446 52.5
ClCG01G007130 Citrullus lanatus HOM05D006834 ORTHO05D008623 1.8e-107 393.7 437 49.0
Haze_05159 Corylus avellana HOM05D006834 ORTHO05D008623 2.7e-106 389.8 443 51.5
Aqoxy2G02436 Aquilegia oxysepala HOM05D006834 ORTHO05D008623 1.3e-105 387.5 396 53.3
MELO3C005199.2 Cucumis melo HOM05D006834 ORTHO05D008623 6.1e-103 378.6 438 48.2
FAN19G1238 Fragaria x ananassa HOM05D006834 ORTHO05D008623 1.2e-101 374.4 415 50.4
FvH4_1g26150 Fragaria vesca HOM05D006834 ORTHO05D008623 7.5e-101 371.7 415 50.4
HanXRQChr06g0167961 Helianthus annuus HOM05D006834 ORTHO05D008623 9.8e-101 371.3 407 50.4
FAN26G0527 Fragaria x ananassa HOM05D006834 ORTHO05D008623 2.4e-99 366.7 414 49.3
FAN23G1444 Fragaria x ananassa HOM05D006834 ORTHO05D008623 5.9e-98 362.1 415 49.6
RcHm_v2.0_Chr3g0485641 Rosa chinensis HOM05D006834 ORTHO05D008623 2.9e-97 359.8 352 54.8
Ca_09251_v3 Cicer arietinum L. HOM05D006834 ORTHO05D008623 6.6e-97 358.6 302 59.3
Lsat_1_v5_gn_8_167261 Lactuca sativa HOM05D006834 ORTHO05D008623 8.6e-97 358.2 400 49.2
ATR0796G131 Amborella trichopoda HOM05D006834 ORTHO05D008623 1.5e-96 357.5 366 51.6
arahy.Tifrunner.gnm1.ann1.AJ9Z2K Arachis hypogaea HOM05D006834 ORTHO05D008623 2.5e-96 356.7 422 45.5
AUR62032606 Chenopodium quinoa HOM05D006834 ORTHO05D008623 7.3e-96 355.1 418 47.1
AUR62001071 Chenopodium quinoa HOM05D006834 ORTHO05D008623 1.8e-94 350.5 418 46.9
PGSC0003DMG401001116 Solanum tuberosum HOM05D006834 ORTHO05D008623 1.2e-93 347.8 431 48.7
Cc01_g21740 Coffea canephora HOM05D006834 ORTHO05D008623 2.0e-93 347.1 418 47.6
arahy.Tifrunner.gnm1.ann1.W0LIHS Arachis hypogaea HOM05D006834 ORTHO05D008623 9.8e-93 344.7 448 43.3
Nitab4.5_0003092g0080 Nicotiana tabacum HOM05D006834 ORTHO05D008623 2.9e-92 343.2 417 48.2
CAN.G179.29 Capsicum annuum HOM05D006834 ORTHO05D008623 3.7e-92 342.8 404 49.8
Nitab4.5_0007915g0010 Nicotiana tabacum HOM05D006834 ORTHO05D008623 3.7e-92 342.8 423 47.5
Sopen01g030580 Solanum pennellii HOM05D006834 ORTHO05D008623 7.0e-91 338.6 428 47.9
ECA236G2058 Erigeron canadensis HOM05D006834 ORTHO05D007803 9.2e-91 338.2 411 47.7
Migut.D01683 Erythranthe guttata HOM05D006834 ORTHO05D008623 1.2e-90 337.8 428 45.3
CDE01G0777 Ceratophyllum demersum HOM05D006834 ORTHO05D008623 1.9e-88 330.5 373 49.9
Ah.12g061380 Amaranthus hybridus HOM05D006834 ORTHO05D008623 1.4e-86 324.3 372 47.3
Oeu008276.1 Olea europaea HOM05D006834 ORTHO05D008623 2.0e-85 320.5 408 44.1
Manes.05G007900 Manihot esculenta HOM05D006834 ORTHO05D008623 9.8e-85 318.2 352 52.8
EL10Ac9g22392 Beta vulgaris HOM05D006834 ORTHO05D008623 7.0e-83 312.0 368 46.2
MSTRG.21731 Avicennia marina HOM05D006834 ORTHO05D008623 5.1e-81 305.8 431 41.3
SGA_v2.0_scaffold310G48195 Striga asiatica HOM05D006834 ORTHO05D008623 1.9e-80 303.9 413 42.1
COL.COLO4_23116 Corchorus olitorius HOM05D006834 ORTHO05D008623 3.6e-79 299.7 347 51.6
DCAR_012294 Daucus carota HOM05D006834 ORTHO05D008623 1.7e-76 290.8 428 41.1
Gohir.D12G123000 Gossypium hirsutum HOM05D006834 ORTHO05D008623 5.6e-72 275.8 333 50.8
Prupe.3G001500 Prunus persica HOM05D006834 ORTHO05D008623 2.8e-71 273.5 343 48.7
AUR62031719 Chenopodium quinoa HOM05D006834 ORTHO05D008623 3.4e-69 266.5 417 40.8
Pp3c3_29200 Physcomitrium patens HOM05D006834 ORTHO05D008623 4.2e-67 259.6 378 38.6
Hma1.2p1_0408F.1_g146240 Hydrangea macrophylla HOM05D006834 ORTHO05D008623 9.2e-67 258.5 272 53.7
Os01g0286000 Oryza sativa ssp. japonica HOM05D006834 ORTHO05D008623 8.7e-65 251.9 396 39.9
Zm00001eb129510 Zea mays HOM05D006834 ORTHO05D008623 8.4e-60 235.3 395 40.3
Mapoly0053s0040 Marchantia polymorpha HOM05D006834 ORTHO05D008623 2.3e-57 227.3 414 33.8
SMO339G0071 Selaginella moellendorffii HOM05D006834 ORTHO05D008623 2.0e-53 214.2 427 33.0
Sc05g0000050 Simmondsia chinensis HOM05D006834 ORTHO05D008623 3.4e-53 213.4 205 49.8
HPP92_001172 Vanilla planifolia HOM05D006834 ORTHO05D008623 1.7e-52 211.1 271 44.3
Solyc01g079060.4 Solanum lycopersicum HOM05D006834 ORTHO05D008623 1.1e-43 181.8 200 46.5
Peaxi162Scf00309g00622 Petunia axillaris HOM05D006834 ORTHO05D008623 2.9e-36 157.1 224 47.3
Peaxi162Scf00309g00627 Petunia axillaris HOM05D006834 ORTHO05D008623 7.7e-29 132.5 198 39.4
Hma1.2p1_1735F.1_g299880 Hydrangea macrophylla HOM05D006834 ORTHO05D008623 1.8e-25 121.3 85 64.7
MELO3C033776.2 Cucumis melo HOM05D006834 ORTHO05D008623 6.1e-18 96.3 64 67.2
MELO3C028884.2 Cucumis melo HOM05D006834 ORTHO05D008623 7.9e-18 95.9 119 44.5
CBR_g12374 Chara braunii HOM05D006834 ORTHO05D008623 1.5e-16 91.7 272 29.0
MELO3C005268.2 Cucumis melo HOM05D006834 ORTHO05D008623 3.7e-15 87.0 70 61.4
MELO3C032404.2 Cucumis melo HOM05D006834 ORTHO05D008623 1.4e-14 85.1 54 66.7
MELO3C029443.2 Cucumis melo HOM05D006834 ORTHO05D008623 9.7e-08 62.4 35 77.1
HPP92_010139 Vanilla planifolia HOM05D006834 ORTHO05D008623 3.7e-07 60.5 68 51.5
Aa31LG10G640 Aethionema arabicum HOM05D006834 ORTHO05D008623 3.1e-06 57.4 60 51.7
SGA_v2.0_scaffold81G26073 Striga asiatica HOM05D006834 ORTHO05D008623 9.1e-06 55.8 45 46.7


User provided reference genes

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