Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p36560 Brassica napus HOM05D006043 ORTHO05D007309 1.9e-53 212.2 104 100.0
BolC8t51238H Brassica oleracea HOM05D006043 ORTHO05D007309 1.9e-53 212.2 104 100.0
BcaC03g16179 Brassica carinata HOM05D006043 ORTHO05D007309 5.6e-50 200.7 104 96.2
C02p39530 Brassica napus HOM05D006043 ORTHO05D007309 1.6e-49 199.1 104 95.2
BolC2t09966H Brassica oleracea HOM05D006043 ORTHO05D007309 1.6e-49 199.1 104 95.2
C03p43400 Brassica napus HOM05D006043 ORTHO05D007309 6.9e-48 193.7 104 91.3
BcaC01g04256 Brassica carinata HOM05D006043 ORTHO05D007309 2.2e-46 188.7 104 89.4
BraA03t12747Z Brassica rapa HOM05D006043 ORTHO05D007309 4.9e-46 187.6 104 89.4
BcaB03g11578 Brassica carinata HOM05D006043 ORTHO05D007309 2.4e-45 185.3 101 91.1
A03p35730 Brassica napus HOM05D006043 ORTHO05D007309 6.6e-43 177.2 95 90.5
Sp3g08330 Schrenkiella parvula HOM05D006043 ORTHO05D007309 1.7e-38 162.5 106 76.4
AT3G10020 Arabidopsis thaliana HOM05D006043 ORTHO05D007309 2.9e-38 161.8 100 80.0
BolC3t16611H Brassica oleracea HOM05D006043 ORTHO05D007309 4.9e-38 161.0 105 80.0
A05p39030 Brassica napus HOM05D006043 ORTHO05D007309 1.1e-37 159.8 107 78.5
BraA05t22694Z Brassica rapa HOM05D006043 ORTHO05D007309 4.2e-37 157.9 106 78.3
AL3G21330 Arabidopsis lyrata HOM05D006043 ORTHO05D007309 5.4e-37 157.5 101 78.2
Carub.0003s0912 Capsella rubella HOM05D006043 ORTHO05D007309 5.4e-37 157.5 101 76.2
CARHR084520 Cardamine hirsuta HOM05D006043 ORTHO05D007309 1.6e-36 156.0 101 76.2
C05p58050 Brassica napus HOM05D002004 ORTHO05D002089 3.5e-36 154.8 106 75.5
BolC5t34462H Brassica oleracea HOM05D006043 ORTHO05D007309 3.5e-36 154.8 106 75.5
Thhalv10021699m.g Eutrema salsugineum HOM05D006043 ORTHO05D007309 1.3e-35 152.9 102 76.5
BcaC05g29726 Brassica carinata HOM05D006043 ORTHO05D007309 9.6e-34 146.7 107 72.9
Aa31LG3G2550 Aethionema arabicum HOM05D006043 ORTHO05D007309 1.6e-33 146.0 100 72.0
Glyma.03G190100 Glycine max HOM05D006043 ORTHO05D007309 1.4e-21 106.3 101 58.4
Cpa.g.sc5.89 Carica papaya HOM05D006043 ORTHO05D007309 2.5e-21 105.5 102 56.9
Rhsim06G0171100 Rhododendron simsii HOM05D006043 ORTHO05D007309 3.2e-21 105.1 104 58.7
Ciclev10013017m.g Citrus clementina HOM05D006043 ORTHO05D007309 5.5e-21 104.4 102 56.9
COL.COLO4_29832 Corchorus olitorius HOM05D006043 ORTHO05D007309 7.2e-21 104.0 103 57.3
Lj1g0027910 Lotus japonicus HOM05D006043 ORTHO05D007309 9.3e-21 103.6 101 58.4
Manes.08G019800 Manihot esculenta HOM05D006043 ORTHO05D007309 1.2e-20 103.2 105 55.2
FAN02G0054 Fragaria x ananassa HOM05D006043 ORTHO05D007309 3.5e-20 101.7 105 58.1
THA.LOC104816380 Tarenaya hassleriana HOM05D006043 ORTHO05D007309 3.5e-20 101.7 78 62.8
Glyma.19G190400 Glycine max HOM05D006043 ORTHO05D007309 7.9e-20 100.5 101 54.5
Duzib106G1072 Durio zibethinus HOM05D006043 ORTHO05D007309 1.0e-19 100.1 104 57.7
MD14G1014200 Malus domestica HOM05D006043 ORTHO05D007309 1.0e-19 100.1 100 60.0
VMungo1383G3657 Vigna mungo HOM05D006043 ORTHO05D007309 1.3e-19 99.8 101 54.5
Atru.chr8.1654 Acer truncatum HOM05D006043 ORTHO05D007309 2.3e-19 99.0 103 56.3
CSS0040940 Camellia sinensis var. sinensis HOM05D006043 ORTHO05D007309 2.3e-19 99.0 101 55.4
Prupe.7G119300 Prunus persica HOM05D006043 ORTHO05D007309 2.3e-19 99.0 102 54.9
vmacro12136 Vaccinium macrocarpon HOM05D006043 ORTHO05D007309 2.3e-19 99.0 105 56.2
Gorai.006G158600 Gossypium raimondii HOM05D006043 ORTHO05D007309 3.9e-19 98.2 104 55.8
Gohir.D09G138000 Gossypium hirsutum HOM05D006043 ORTHO05D007309 5.1e-19 97.8 104 55.8
FvH4_6g17700 Fragaria vesca HOM05D006043 ORTHO05D007309 8.7e-19 97.1 104 53.8
Eucgr.K02384 Eucalyptus grandis HOM05D006043 ORTHO05D007309 1.1e-18 96.7 105 56.2
Eucgr.K02399 Eucalyptus grandis HOM05D006043 ORTHO05D007309 1.9e-18 95.9 105 56.2
Eucgr.K02410 Eucalyptus grandis HOM05D006043 ORTHO05D007309 1.9e-18 95.9 105 55.2
Medtr7g103520 Medicago truncatula HOM05D006043 ORTHO05D007309 2.5e-18 95.5 103 52.4
QL07p040748 Quercus lobata HOM05D006043 ORTHO05D007309 4.3e-18 94.7 104 53.8
RcHm_v2.0_Chr3g0471911 Rosa chinensis HOM05D006043 ORTHO05D007309 4.3e-18 94.7 105 55.2
Cfa016525 Carpinus fangiana HOM05D006043 ORTHO05D007309 7.4e-18 94.0 103 56.3
Nitab4.5_0010125g0040 Nicotiana tabacum HOM05D006043 ORTHO05D007309 9.7e-18 93.6 108 50.9
Potri.013G014300 Populus trichocarpa HOM05D006043 ORTHO05D007309 9.7e-18 93.6 108 57.4
Haze_19524 Corylus avellana HOM05D006043 ORTHO05D007309 1.3e-17 93.2 105 54.3
CAN.G824.34 Capsicum annuum HOM05D006043 ORTHO05D007309 1.6e-17 92.8 98 54.1
CiPaw.10G004600 Carya illinoinensis HOM05D006043 ORTHO05D007309 2.2e-17 92.4 106 50.0
Eucgr.K02389 Eucalyptus grandis HOM05D006043 ORTHO05D007309 2.2e-17 92.4 105 54.3
Phvul.001G185700 Phaseolus vulgaris HOM05D006043 ORTHO05D007309 2.2e-17 92.4 101 50.5
CANSAT80G1206 Cannabis sativa HOM05D006043 ORTHO05D007309 2.8e-17 92.0 103 51.5
MD12G1016000 Malus domestica HOM05D006043 ORTHO05D007309 2.8e-17 92.0 105 58.1
Peaxi162Scf00412g00073 Petunia axillaris HOM05D006043 ORTHO05D007309 2.8e-17 92.0 100 50.0
CsaV3_3G036730 Cucumis sativus L. HOM05D006043 ORTHO05D007309 3.7e-17 91.7 101 51.5
PGR004G1627 Punica granatum HOM05D006043 ORTHO05D007309 3.7e-17 91.7 103 54.4
MELO3C009427.2 Cucumis melo HOM05D006043 ORTHO05D007309 4.8e-17 91.3 106 50.0
Gohir.A04G066428 Gossypium hirsutum HOM05D006043 ORTHO05D007309 4.8e-17 91.3 105 56.2
Lalb_Chr20g0112261 Lupinus albus HOM05D006043 ORTHO05D007309 4.8e-17 91.3 101 53.5
Eucgr.A01560 Eucalyptus grandis HOM05D006043 ORTHO05D007309 1.1e-16 90.1 86 54.7
Ca_08959_v3 Cicer arietinum L. HOM05D006043 ORTHO05D007309 1.4e-16 89.7 103 52.4
Gohir.D04G105000 Gossypium hirsutum HOM05D006043 ORTHO05D007309 1.8e-16 89.4 104 51.9
Gorai.009G408700 Gossypium raimondii HOM05D006043 ORTHO05D007309 1.8e-16 89.4 104 51.9
Sc07g0005350 Simmondsia chinensis HOM05D006043 ORTHO05D007309 2.4e-16 89.0 101 53.5
Nn6g35076 Nelumbo nucifera HOM05D006043 ORTHO05D007309 3.1e-16 88.6 101 54.5
Gohir.A09G136312 Gossypium hirsutum HOM05D006043 ORTHO05D007309 4.1e-16 88.2 113 48.7
EL10Ac7g17005 Beta vulgaris HOM05D006043 ORTHO05D007309 5.3e-16 87.8 102 46.1
ClCG10G019450 Citrullus lanatus HOM05D006043 ORTHO05D007309 3.4e-15 85.1 106 48.1
MBI01_g32535_MAGBIO Magnolia biondii HOM05D006043 ORTHO05D007309 3.4e-15 85.1 100 51.0
Zm00001eb406490 Zea mays HOM05D006043 ORTHO05D007309 3.4e-15 85.1 106 50.0
C04p63450 Brassica napus HOM05D006043 ORTHO05D007309 4.5e-15 84.7 49 89.8
C07p58330 Brassica napus HOM05D006043 ORTHO05D007309 4.5e-15 84.7 49 89.8
Duzib093G0521 Durio zibethinus HOM05D006043 ORTHO05D007309 5.9e-15 84.3 104 52.9
PGSC0003DMG400002724 Solanum tuberosum HOM05D006043 ORTHO05D007309 7.7e-15 84.0 100 54.0
Nn2g13971 Nelumbo nucifera HOM05D006043 ORTHO05D007309 1.0e-14 83.6 62 58.1
TPR.G7024 Trifolium pratense HOM05D006043 ORTHO05D007309 1.0e-14 83.6 100 50.0
Dinv21268 Davidia involucrata HOM05D006043 ORTHO05D007309 2.9e-14 82.0 97 49.5
SGA_v2.0_scaffold40G15419 Striga asiatica HOM05D006043 ORTHO05D007309 2.9e-14 82.0 100 52.0
Cc06_g05110 Coffea canephora HOM05D006043 ORTHO05D007309 3.8e-14 81.6 106 48.1
TWI13G0012 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 3.8e-14 81.6 104 45.2
TWI74G0769 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 3.8e-14 81.6 104 45.2
Os11g0149200 Oryza sativa ssp. japonica HOM05D006043 ORTHO05D007309 6.5e-14 80.9 94 53.2
Sopen09g003730 Solanum pennellii HOM05D006043 ORTHO05D007309 1.1e-13 80.1 98 52.0
HanXRQChr09g0259401 Helianthus annuus HOM05D006043 ORTHO05D007309 2.5e-13 79.0 102 47.1
TWI53G1797 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 2.5e-13 79.0 60 66.7
Os12g0147200 Oryza sativa ssp. japonica HOM05D006043 ORTHO05D007309 3.2e-13 78.6 106 46.2
Prupe.7G091800 Prunus persica HOM05D006043 ORTHO05D007309 3.2e-13 78.6 87 52.9
PSO384G2483 Papaver somniferum HOM05D006043 ORTHO05D007309 5.5e-13 77.8 112 50.9
Psat3g036320 Pisum sativum HOM05D006043 ORTHO05D007309 5.5e-13 77.8 63 57.1
Solyc09g008970.1 Solanum lycopersicum HOM05D006043 ORTHO05D007309 7.2e-13 77.4 100 52.0
Nitab4.5_0001922g0090 Nicotiana tabacum HOM05D006043 ORTHO05D007309 9.4e-13 77.0 95 49.5
Oeu030483.1 Olea europaea HOM05D006043 ORTHO05D007309 9.4e-13 77.0 101 47.5
Aqoxy2G01470 Aquilegia oxysepala HOM05D006043 ORTHO05D007309 2.1e-12 75.9 100 51.0
Ah.08g211020 Amaranthus hybridus HOM05D006043 ORTHO05D007309 4.6e-12 74.7 105 43.8
DCAR_009167 Daucus carota HOM05D006043 ORTHO05D007309 4.6e-12 74.7 98 51.0
Cc00_g32800 Coffea canephora HOM05D006043 ORTHO05D007309 7.9e-12 73.9 103 47.6
Aqoxy1G00961 Aquilegia oxysepala HOM05D006043 ORTHO05D007309 1.0e-11 73.6 107 45.8
SalBow3G1044 Salvia bowleyana HOM05D006043 ORTHO05D007309 1.4e-11 73.2 98 48.0
HPP92_021571 Vanilla planifolia HOM05D006043 ORTHO05D007309 1.4e-11 73.2 104 44.2
TAR334G0001 Trochodendron aralioides HOM05D006043 ORTHO05D007309 5.1e-11 71.2 83 54.2
TAR369G1076 Trochodendron aralioides HOM05D006043 ORTHO05D007309 5.1e-11 71.2 83 54.2
Lsat_1_v5_gn_2_22321 Lactuca sativa HOM05D006043 ORTHO05D007309 6.7e-11 70.9 99 44.4
Sed0027852 Sechium edule HOM05D006043 ORTHO05D007309 1.1e-10 70.1 100 46.0
Thecc.05G079900 Theobroma cacao HOM05D006043 ORTHO05D007309 2.0e-10 69.3 102 43.1
Sopen09g003740 Solanum pennellii HOM05D006043 ORTHO05D007309 9.7e-10 67.0 104 43.3
Cc00_g05260 Coffea canephora HOM05D006043 ORTHO05D007309 2.8e-09 65.5 103 46.6
Peaxi162Scf00412g00063 Petunia axillaris HOM05D006043 ORTHO05D007309 3.7e-09 65.1 104 46.2
Lj2P127T74 Lonicera japonica HOM05D006043 ORTHO05D007309 1.4e-08 63.2 85 48.2
PGSC0003DMG400002723 Solanum tuberosum HOM05D006043 ORTHO05D007309 3.1e-08 62.0 104 40.4
Solyc09g008980.2 Solanum lycopersicum HOM05D006043 ORTHO05D007309 4.1e-08 61.6 104 42.3
ECA126G0006 Erigeron canadensis HOM05D006043 ORTHO05D007309 5.3e-08 61.2 58 48.3
Nitab4.5_0010125g0030 Nicotiana tabacum HOM05D006043 ORTHO05D007309 6.9e-08 60.8 104 44.2
Oeu040545.1 Olea europaea HOM05D006043 ORTHO05D007309 1.2e-07 60.1 108 41.7
SEGI_20897 Sequoiadendron giganteum HOM05D006043 ORTHO05D007309 4.5e-07 58.2 97 44.3
Lj4P368T6 Lonicera japonica HOM05D006043 ORTHO05D007309 1.3e-06 56.6 37 67.6
SMO358G0245 Selaginella moellendorffii HOM05D006043 ORTHO05D007309 1.7e-06 56.2 63 46.0


User provided reference genes

Program Settings