Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p36410 Brassica napus HOM05D003721 ORTHO05D004303 0.0e+00 1182.2 714 100.0
BolC8t51224H Brassica oleracea HOM05D003721 ORTHO05D004303 0.0e+00 1180.2 714 99.9
BcaC07g40669 Brassica carinata HOM05D003721 ORTHO05D004303 0.0e+00 1179.5 714 99.9
A09p53630 Brassica napus HOM05D003721 ORTHO05D004303 0.0e+00 1126.7 712 96.1
BraA09t40785Z Brassica rapa HOM05D003721 ORTHO05D004303 0.0e+00 1124.4 712 95.9
BcaC07g40653 Brassica carinata HOM05D003721 ORTHO05D004303 1.3e-302 1042.7 722 85.0
Sp5g01840 Schrenkiella parvula HOM05D003721 ORTHO05D004303 3.7e-286 988.0 722 85.0
Thhalv10005812m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 2.0e-284 982.2 726 84.0
BcaC07g42682 Brassica carinata HOM05D003721 ORTHO05D004303 1.9e-266 922.5 637 89.3
C06p27570 Brassica napus HOM05D003721 ORTHO05D004303 9.5e-266 920.2 728 81.6
A07p25580 Brassica napus HOM05D003721 ORTHO05D004303 3.7e-262 908.3 723 82.3
BolC6t37925H Brassica oleracea HOM05D003721 ORTHO05D004303 2.1e-257 892.5 740 79.9
BraA07t30199Z Brassica rapa HOM05D003721 ORTHO05D004303 5.8e-255 884.4 736 80.3
AT3G61570 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 2.1e-249 865.9 722 76.7
BcaC08g45136 Brassica carinata HOM05D003721 ORTHO05D004303 4.4e-247 858.2 729 78.3
AL5G43940 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 6.4e-246 854.4 723 76.5
BcaB02g07370 Brassica carinata HOM05D003721 ORTHO05D004303 7.1e-229 797.7 726 73.6
AL4G45430 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 2.5e-213 746.1 736 69.0
AT2G46180 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 2.5e-213 746.1 734 68.4
Sp5g32820 Schrenkiella parvula HOM05D003721 ORTHO05D004303 5.1e-203 711.8 734 66.8
BcaC07g42673 Brassica carinata HOM05D003721 ORTHO05D004303 2.6e-202 709.5 698 69.1
Thhalv10001332m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 1.8e-200 703.4 733 66.4
Aa31LG1G27570 Aethionema arabicum HOM05D003721 ORTHO05D004303 1.9e-189 666.8 741 64.5
Carub.0004s2886 Capsella rubella HOM05D003721 ORTHO05D004303 6.8e-179 631.7 738 61.1
THA.LOC104817323 Tarenaya hassleriana HOM05D003721 ORTHO05D004303 9.8e-170 601.3 755 60.5
COL.COLO4_06374 Corchorus olitorius HOM05D003721 ORTHO05D004303 6.3e-169 598.6 781 52.0
Atru.chr5.592 Acer truncatum HOM05D003721 ORTHO05D004303 7.8e-167 591.7 798 49.6
Ciclev10018933m.g Citrus clementina HOM05D003721 ORTHO05D004303 5.0e-166 589.0 790 53.2
Duzib133G0509 Durio zibethinus HOM05D003721 ORTHO05D004303 1.9e-165 587.0 780 51.3
Thecc.01G351200 Theobroma cacao HOM05D003721 ORTHO05D004303 6.1e-164 582.0 780 51.2
Manes.07G084500 Manihot esculenta HOM05D003721 ORTHO05D004303 7.8e-159 565.1 794 49.5
Cfa003861 Carpinus fangiana HOM05D003721 ORTHO05D004303 9.5e-157 558.1 801 48.9
Dinv32529 Davidia involucrata HOM05D003721 ORTHO05D004303 2.8e-156 556.6 806 48.3
QL04p055909 Quercus lobata HOM05D003721 ORTHO05D004303 3.6e-156 556.2 793 49.1
Ca_07946_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 5.2e-155 552.4 741 51.7
Glyma.07G062500 Glycine max HOM05D003721 ORTHO05D004303 8.9e-155 551.6 753 49.3
Glyma.16G030600 Glycine max HOM05D003721 ORTHO05D004303 1.2e-154 551.2 753 50.7
Potri.002G165500 Populus trichocarpa HOM05D003721 ORTHO05D004303 8.3e-153 545.0 795 47.0
Potri.014G091300 Populus trichocarpa HOM05D003721 ORTHO05D004303 8.3e-153 545.0 790 47.5
CSS0038344 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 1.1e-152 544.7 784 47.8
CSS0014201 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 4.1e-152 542.7 785 47.9
Medtr7g079200 Medicago truncatula HOM05D003721 ORTHO05D004303 6.0e-151 538.9 739 51.2
TWI59G1183 Tripterygium wilfordii HOM05D003721 ORTHO05D004303 1.0e-150 538.1 798 47.4
Lalb_Chr17g0338961 Lupinus albus HOM05D003721 ORTHO05D004303 2.3e-150 537.0 776 47.0
Phvul.010G105500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 6.6e-150 535.4 703 54.1
Lj1g0019249 Lotus japonicus HOM05D003721 ORTHO05D004303 1.1e-149 534.6 740 51.8
FAN03G0785 Fragaria x ananassa HOM05D003721 ORTHO05D004303 9.5e-149 531.6 780 49.7
Lj7A506T70 Lonicera japonica HOM05D003721 ORTHO05D004303 9.5e-149 531.6 758 51.3
VMungo0331G1476 Vigna mungo HOM05D003721 ORTHO05D004303 1.2e-148 531.2 736 49.3
GSVIVG01027009001 Vitis vinifera HOM05D003721 ORTHO05D004303 1.6e-148 530.8 728 53.0
RcHm_v2.0_Chr1g0357861 Rosa chinensis HOM05D003721 ORTHO05D004303 8.1e-148 528.5 781 50.6
Sopen01g039000 Solanum pennellii HOM05D003721 ORTHO05D004303 1.4e-147 527.7 686 50.9
Gorai.008G119300 Gossypium raimondii HOM05D003721 ORTHO05D004303 5.2e-147 525.8 772 53.4
FAN10G1929 Fragaria x ananassa HOM05D003721 ORTHO05D004303 1.2e-146 524.6 780 50.5
Gohir.D12G110000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 1.2e-146 524.6 772 47.9
Solyc01g095210.3 Solanum lycopersicum HOM05D003721 ORTHO05D004303 1.2e-146 524.6 729 48.8
vmacro13221 Vaccinium macrocarpon HOM05D003721 ORTHO05D004303 2.0e-146 523.9 840 45.2
FAN10G1794 Fragaria x ananassa HOM05D003721 ORTHO05D004303 4.4e-146 522.7 780 50.5
Glyma.09G253700 Glycine max HOM05D003721 ORTHO05D004303 4.4e-146 522.7 695 50.5
Gohir.A12G106100 Gossypium hirsutum HOM05D003721 ORTHO05D004303 4.4e-146 522.7 776 51.9
CANSAT94G0013 Cannabis sativa HOM05D003721 ORTHO05D004303 7.6e-146 521.9 785 47.4
FvH4_7g15532 Fragaria vesca HOM05D003721 ORTHO05D004303 1.7e-145 520.8 780 50.9
FAN06G3247 Fragaria x ananassa HOM05D003721 ORTHO05D004303 4.9e-145 519.2 780 50.9
Glyma.18G239200 Glycine max HOM05D003721 ORTHO05D004303 6.4e-145 518.8 746 48.3
arahy.Tifrunner.gnm1.ann1.X01UQ7 Arachis hypogaea HOM05D003721 ORTHO05D004303 8.3e-145 518.5 745 48.6
TPR.G29569 Trifolium pratense HOM05D003721 ORTHO05D004303 2.4e-144 516.9 778 46.4
CiPaw.01G068800 Carya illinoinensis HOM05D003721 ORTHO05D004303 7.1e-144 515.4 788 47.5
arahy.Tifrunner.gnm1.ann1.J8U9TP Arachis hypogaea HOM05D003721 ORTHO05D004303 3.0e-142 510.0 697 49.6
Sabra14G0066200 Salix brachista HOM05D003721 ORTHO05D004303 3.0e-142 510.0 833 44.7
Dinv43871 Davidia involucrata HOM05D003721 ORTHO05D004303 1.1e-141 508.1 801 45.9
FAN06G4946 Fragaria x ananassa HOM05D003721 ORTHO05D004303 1.9e-141 507.3 804 50.0
PGR031G3178 Punica granatum HOM05D003721 ORTHO05D004303 5.6e-141 505.8 772 50.0
Nn1g01721 Nelumbo nucifera HOM05D003721 ORTHO05D004303 7.3e-141 505.4 810 46.3
arahy.Tifrunner.gnm1.ann1.QXLJ4L Arachis hypogaea HOM05D003721 ORTHO05D004303 1.2e-140 504.6 686 49.6
TAR629G3186 Trochodendron aralioides HOM05D003721 ORTHO05D004303 2.1e-140 503.8 813 44.8
CARHR141460 Cardamine hirsuta HOM05D003721 ORTHO05D004303 1.4e-139 501.1 462 73.8
Gohir.A11G093000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 1.8e-139 500.7 748 47.3
Sed0002636 Sechium edule HOM05D003721 ORTHO05D004303 2.4e-139 500.4 777 49.2
CSS0042065 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 8.9e-139 498.4 771 46.3
CsaV3_6G000920 Cucumis sativus L. HOM05D003721 ORTHO05D004303 8.9e-139 498.4 747 49.9
Ah.05g180090 Amaranthus hybridus HOM05D003721 ORTHO05D004303 1.2e-138 498.0 714 55.0
TPR.G18168 Trifolium pratense HOM05D003721 ORTHO05D004303 1.2e-138 498.0 738 51.1
HanXRQChr06g0166991 Helianthus annuus HOM05D003721 ORTHO05D004303 1.5e-138 497.7 691 54.7
MD07G1130300 Malus domestica HOM05D003721 ORTHO05D004303 2.6e-138 496.9 788 44.9
Peaxi162Scf00020g01717 Petunia axillaris HOM05D003721 ORTHO05D004303 9.9e-138 495.0 784 45.8
Duzib138G0478 Durio zibethinus HOM05D003721 ORTHO05D004303 1.3e-137 494.6 796 45.1
Hund16678 Selenicereus undatus HOM05D003721 ORTHO05D004303 1.3e-137 494.6 728 49.2
Sed0001790 Sechium edule HOM05D003721 ORTHO05D004303 2.9e-137 493.4 787 45.7
Prupe.2G178900 Prunus persica HOM05D003721 ORTHO05D004303 1.9e-136 490.7 762 45.7
arahy.Tifrunner.gnm1.ann1.M56506 Arachis hypogaea HOM05D003721 ORTHO05D004303 1.2e-135 488.0 676 48.2
AUR62004419 Chenopodium quinoa HOM05D003721 ORTHO05D004303 1.2e-135 488.0 710 48.2
AUR62022625 Chenopodium quinoa HOM05D003721 ORTHO05D004303 2.3e-134 483.8 710 48.0
ECA240G1536 Erigeron canadensis HOM05D003721 ORTHO05D004303 3.0e-134 483.4 741 46.6
CAN.G78.136 Capsicum annuum HOM05D003721 ORTHO05D004303 9.6e-133 478.4 776 45.9
Cc02_g38690 Coffea canephora HOM05D003721 ORTHO05D004303 6.2e-132 475.7 773 45.5
Rhsim07G0009400 Rhododendron simsii HOM05D003721 ORTHO05D004303 6.2e-132 475.7 938 39.8
ClCG06G003380 Citrullus lanatus HOM05D003721 ORTHO05D004303 1.2e-130 471.5 798 46.4
MD01G1072600 Malus domestica HOM05D003721 ORTHO05D004303 7.1e-128 462.2 791 49.2
Ca_03491_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 2.7e-127 460.3 722 44.7
DCAR_008641 Daucus carota HOM05D003721 ORTHO05D004303 2.7e-127 460.3 783 44.4
Gorai.007G104100 Gossypium raimondii HOM05D003721 ORTHO05D004303 3.5e-127 459.9 775 47.4
Nitab4.5_0003501g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 7.9e-127 458.8 766 46.3
PSO170G3080 Papaver somniferum HOM05D003721 ORTHO05D004303 1.0e-126 458.4 752 43.2
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 1.7e-126 457.6 771 44.2
Nitab4.5_0000915g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 5.6e-125 452.6 754 43.8
Actinidia20169 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.3e-124 451.4 767 43.8
Migut.B01806 Erythranthe guttata HOM05D003721 ORTHO05D004303 1.5e-122 444.5 771 45.9
Eucgr.D02329 Eucalyptus grandis HOM05D003721 ORTHO05D004303 1.5e-122 444.5 728 44.9
EL10Ac1g00346 Beta vulgaris HOM05D003721 ORTHO05D004303 5.8e-122 442.6 739 44.7
Phvul.008G057500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 4.9e-121 439.5 766 48.0
Medtr8g028445 Medicago truncatula HOM05D003721 ORTHO05D004303 8.4e-121 438.7 711 44.9
SalBow3G1665 Salvia bowleyana HOM05D003721 ORTHO05D004303 3.2e-120 436.8 760 47.1
MSTRG.20868 Avicennia marina HOM05D003721 ORTHO05D004303 5.4e-120 436.0 769 48.5
PSO063G0643 Papaver somniferum HOM05D003721 ORTHO05D004303 7.1e-120 435.6 784 41.2
Sc23g0002500 Simmondsia chinensis HOM05D003721 ORTHO05D004303 3.0e-118 430.3 704 45.3
Psat3g105680 Pisum sativum HOM05D003721 ORTHO05D004303 9.6e-117 425.2 618 46.6
VMungo1383G3272 Vigna mungo HOM05D003721 ORTHO05D004303 1.5e-114 417.9 693 49.4
Cpa.g.sc11.59 Carica papaya HOM05D003721 ORTHO05D004303 1.0e-113 415.2 502 52.4
Gohir.D11G097866 Gossypium hirsutum HOM05D003721 ORTHO05D004303 4.9e-113 412.9 607 49.8
MBI07_g11740_MAGBIO Magnolia biondii HOM05D003721 ORTHO05D004303 7.1e-112 409.1 811 41.3
Lsat_1_v5_gn_3_138600 Lactuca sativa HOM05D003721 ORTHO05D004303 6.0e-111 406.0 746 44.8
Haze_15575 Corylus avellana HOM05D003721 ORTHO05D004303 6.7e-110 402.5 614 47.1
Haze_15580 Corylus avellana HOM05D003721 ORTHO05D004303 4.3e-109 399.8 613 47.0
unitig_52.g17061 Utricularia gibba HOM05D003721 ORTHO05D004303 5.3e-107 392.9 713 45.9
MELO3C021177.2 Cucumis melo HOM05D003721 ORTHO05D004303 2.0e-106 391.0 697 45.3
Lalb_Chr04g0259321 Lupinus albus HOM05D003721 ORTHO05D004303 5.5e-104 382.9 478 52.3
Aqoxy5G04062 Aquilegia oxysepala HOM05D003721 ORTHO05D004303 2.7e-103 380.6 809 39.2
BcaC07g40657 Brassica carinata HOM05D003721 ORTHO05D004303 4.6e-103 379.8 250 88.0
CDE02G2110 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 1.1e-99 368.6 748 40.0
ATR1093G009 Amborella trichopoda HOM05D003721 ORTHO05D004303 8.5e-97 359.0 788 38.1
HPP92_023080 Vanilla planifolia HOM05D003721 ORTHO05D004303 1.4e-94 351.7 716 40.9
Oeu010635.1 Olea europaea HOM05D003721 ORTHO05D004303 2.3e-94 350.9 831 39.1
CDE08G1001 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 4.3e-93 346.7 746 39.7
Zm00001eb042060 Zea mays HOM05D003721 ORTHO05D004303 3.1e-91 340.5 682 39.7
PGSC0003DMG400000197 Solanum tuberosum HOM05D003721 ORTHO05D004303 1.4e-83 315.1 319 60.2
Os08g0386900 Oryza sativa ssp. japonica HOM05D003721 ORTHO05D004303 2.8e-76 290.8 332 54.5
Mapoly0053s0042 Marchantia polymorpha HOM05D003721 ORTHO05D004303 5.5e-72 276.6 742 33.8
SEGI_16602 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 6.1e-71 273.1 275 58.2
Sabra02G0146000 Salix brachista HOM05D003721 ORTHO05D004303 3.0e-70 270.8 591 37.4
BcaC08g45137 Brassica carinata HOM05D003721 ORTHO05D004303 1.2e-66 258.8 283 62.2
Pp3c12_14500 Physcomitrium patens HOM05D003721 ORTHO05D004303 1.3e-57 228.8 264 50.8
BcaC07g40658 Brassica carinata HOM05D003721 ORTHO05D004303 6.6e-57 226.5 307 56.4
Hma1.2p1_0623F.1_g191170 Hydrangea macrophylla HOM05D003721 ORTHO05D004303 3.0e-54 217.6 377 42.2
QL01p002178 Quercus lobata HOM05D003721 ORTHO05D004303 5.7e-53 213.4 302 50.0
TPR.G35781 Trifolium pratense HOM05D003721 ORTHO05D004303 1.2e-47 195.7 354 40.1
Pp3c3_18730 Physcomitrium patens HOM05D003721 ORTHO05D004303 2.8e-47 194.5 733 32.9
BcaC07g40654 Brassica carinata HOM05D003721 ORTHO05D004303 9.8e-45 186.0 417 52.3
AagrBONN_evm.TU.Sc2ySwM_369.3 Anthoceros agrestis HOM05D003721 ORTHO05D004303 2.2e-44 184.9 220 47.7
Carub.0005s2826 Capsella rubella HOM05D003721 ORTHO05D004303 1.8e-38 165.2 217 55.3
Haze_15579 Corylus avellana HOM05D003721 ORTHO05D004303 8.9e-38 162.9 190 56.8
Actinidia37722 Actinidia chinensis HOM05D003721 ORTHO05D004074 4.3e-32 144.1 407 33.9
BcaC08g45231 Brassica carinata HOM05D003721 ORTHO05D004303 3.7e-28 131.0 89 80.9
Cpa.g.sc11.56 Carica papaya HOM05D003721 ORTHO05D004303 1.9e-27 128.6 107 68.2
Haze_15574 Corylus avellana HOM05D003721 ORTHO05D004303 4.1e-27 127.5 170 51.8
SGA_v2.0_scaffold4G02274 Striga asiatica HOM05D003721 ORTHO05D004303 9.2e-27 126.3 182 50.0
Lalb_Chr04g0259331 Lupinus albus HOM05D003721 ORTHO05D004303 4.3e-24 117.5 240 42.5
arahy.Tifrunner.gnm1.ann1.LL4IHI Arachis hypogaea HOM05D003721 ORTHO05D004303 1.2e-23 115.9 105 58.1
Actinidia37723 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.9e-19 102.1 160 48.8
AL5G44110 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 7.1e-19 100.1 72 84.7
Actinidia10078 Actinidia chinensis HOM05D003721 ORTHO05D004303 3.9e-17 94.4 396 28.3
MCO16G164 Micromonas commoda HOM05D003721 ORTHO05D004303 2.8e-15 88.2 185 32.4
SHI13345 Sapria himalayana HOM05D003721 ORTHO05D004303 4.0e-14 84.3 104 44.2
CBR_g40304 Chara braunii HOM05D001539 ORTHO05D000937 5.3e-14 84.0 115 44.3
Actinidia21288 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.5e-13 82.4 67 68.7
Actinidia10079 Actinidia chinensis HOM05D003721 ORTHO05D004303 3.8e-12 77.8 86 52.3
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 3.2e-11 74.7 389 31.1
Cre12.g495800 Chlamydomonas reinhardtii HOM05D003721 ORTHO05D004303 3.5e-10 71.2 224 30.8
SEGI_39264 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 2.4e-06 58.5 389 26.7
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 6.9e-06 57.0 315 29.5


User provided reference genes

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