Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p36230 Brassica napus HOM05D000509 ORTHO05D006393 4.3e-67 258.1 150 100.0
BolC8t51205H Brassica oleracea HOM05D000509 ORTHO05D006393 4.3e-67 258.1 150 100.0
BcaC07g40634 Brassica carinata HOM05D000509 ORTHO05D006393 1.3e-52 209.9 150 82.7
BraA09t40768Z Brassica rapa HOM05D000509 ORTHO05D006393 9.6e-51 203.8 153 83.7
A09p53420 Brassica napus HOM05D000509 ORTHO05D006393 1.7e-39 166.4 123 85.4
Sp5g02030 Schrenkiella parvula HOM05D000509 ORTHO05D006393 1.6e-34 149.8 123 79.7
AT3G61370 Arabidopsis thaliana HOM05D000509 ORTHO05D006393 6.2e-34 147.9 123 76.4
A04p01140 Brassica napus HOM05D000509 ORTHO05D006393 6.2e-34 147.9 141 73.0
C04p31370 Brassica napus HOM05D000509 ORTHO05D006393 7.6e-32 141.0 143 72.0
Thhalv10006311m.g Eutrema salsugineum HOM05D000509 ORTHO05D006393 7.6e-32 141.0 123 75.6
BraA04t15830Z Brassica rapa HOM05D000509 ORTHO05D006393 4.9e-31 138.3 126 74.6
BcaC02g10220 Brassica carinata HOM05D000509 ORTHO05D006393 1.1e-27 127.1 123 73.2
BolC4t24686H Brassica oleracea HOM05D000509 ORTHO05D006393 2.8e-26 122.5 123 69.9
Aa31LG1G27330 Aethionema arabicum HOM05D000509 ORTHO05D006393 9.0e-25 117.5 81 79.0
AL5G43630 Arabidopsis lyrata HOM05D000509 ORTHO05D006393 1.7e-23 113.2 123 61.0
CARHR171710 Cardamine hirsuta HOM05D000509 ORTHO05D006393 6.5e-23 111.3 123 64.2
THA.LOC104820589 Tarenaya hassleriana HOM05D000509 ORTHO05D006393 2.5e-22 109.4 117 65.0
Aa31LG5G5170 Aethionema arabicum HOM05D000509 ORTHO05D006393 5.5e-22 108.2 105 71.4
AT4G07940 Arabidopsis thaliana HOM05D000509 ORTHO05D006393 7.1e-22 107.8 138 55.1
THA.LOC104798540 Tarenaya hassleriana HOM05D000509 ORTHO05D006393 3.5e-21 105.5 121 57.9
Carub.0005s2804 Capsella rubella HOM05D000509 ORTHO05D006393 3.0e-20 102.4 61 85.2
BcaC05g27864 Brassica carinata HOM05D000770 ORTHO05D000586 3.9e-20 102.1 63 88.9
BcaC07g41071 Brassica carinata HOM05D000509 ORTHO05D032338 2.5e-19 99.4 57 91.2
C08p40730 Brassica napus HOM05D000075 ORTHO05D032338 2.5e-19 99.4 57 91.2
BolC8t51638H Brassica oleracea HOM05D000075 ORTHO05D032338 2.5e-19 99.4 57 91.2
A09p02720 Brassica napus HOM05D000770 ORTHO05D000586 1.6e-18 96.7 76 76.3
AL1G53560 Arabidopsis lyrata HOM05D000509 ORTHO05D006393 4.8e-18 95.1 61 80.3
Glyma.18G233000 Glycine max HOM05D000509 ORTHO05D006393 6.3e-18 94.7 101 56.4
TWI14G0500 Tripterygium wilfordii HOM05D000509 ORTHO05D006393 6.3e-18 94.7 116 49.1
Cpa.g.sc11.3 Carica papaya HOM05D000509 ORTHO05D006393 2.4e-17 92.8 91 56.0
Ciclev10022504m.g Citrus clementina HOM05D000509 ORTHO05D006393 2.4e-17 92.8 91 54.9
GSVIVG01008341001 Vitis vinifera HOM05D000509 ORTHO05D006393 9.0e-17 90.9 86 55.8
C09p52170 Brassica napus HOM05D000770 ORTHO05D000586 1.2e-16 90.5 63 82.5
CiPaw.01G061300 Carya illinoinensis HOM05D000509 ORTHO05D006393 2.0e-16 89.7 126 45.2
Dinv41795 Davidia involucrata HOM05D000509 ORTHO05D006393 4.5e-16 88.6 137 44.5
Prupe.2G170600 Prunus persica HOM05D000509 ORTHO05D006393 5.9e-16 88.2 86 58.1
PGR042G3203 Punica granatum HOM05D000509 ORTHO05D006393 5.9e-16 88.2 102 50.0
arahy.Tifrunner.gnm1.ann1.E8SAKG Arachis hypogaea HOM05D000509 ORTHO05D006393 7.6e-16 87.8 102 53.9
Thecc.04G199400 Theobroma cacao HOM05D000509 ORTHO05D006393 1.0e-15 87.4 98 50.0
arahy.Tifrunner.gnm1.ann1.NYL5F5 Arachis hypogaea HOM05D000509 ORTHO05D006393 1.3e-15 87.0 102 52.9
BolC4t28275H Brassica oleracea HOM05D000770 ORTHO05D006393 1.3e-15 87.0 56 85.7
BolC5t32602H Brassica oleracea HOM05D000770 ORTHO05D000586 2.2e-15 86.3 45 95.6
Haze_15506 Corylus avellana HOM05D000509 ORTHO05D006393 2.2e-15 86.3 88 52.3
TWI23G0635 Tripterygium wilfordii HOM05D000509 ORTHO05D006393 2.2e-15 86.3 113 46.9
Phvul.008G062400 Phaseolus vulgaris HOM05D000509 ORTHO05D006393 2.9e-15 85.9 101 52.5
Cfa003925 Carpinus fangiana HOM05D000509 ORTHO05D006393 5.0e-15 85.1 88 51.1
Ca_07920_v3 Cicer arietinum L. HOM05D000509 ORTHO05D006393 5.0e-15 85.1 115 48.7
Eucgr.B00880 Eucalyptus grandis HOM05D000509 ORTHO05D006393 5.0e-15 85.1 92 52.2
Eucgr.B00993 Eucalyptus grandis HOM05D000509 ORTHO05D006393 5.0e-15 85.1 92 52.2
BolC3t17235H Brassica oleracea HOM05D000770 ORTHO05D000586 6.5e-15 84.7 56 83.9
DCAR_019105 Daucus carota HOM05D000509 ORTHO05D006393 8.5e-15 84.3 98 50.0
VMungo0540G0837 Vigna mungo HOM05D000509 ORTHO05D006393 1.4e-14 83.6 101 52.5
CiPaw.02G030900 Carya illinoinensis HOM05D000509 ORTHO05D006393 1.9e-14 83.2 96 51.0
VMungo1383G0114 Vigna mungo HOM05D000509 ORTHO05D006393 1.9e-14 83.2 100 51.0
Duzib151G0093 Durio zibethinus HOM05D000509 ORTHO05D006393 2.5e-14 82.8 100 48.0
MD01G1060700 Malus domestica HOM05D000509 ORTHO05D006393 3.2e-14 82.4 85 55.3
Prupe.1G174800 Prunus persica HOM05D000509 ORTHO05D006393 3.2e-14 82.4 89 53.9
CSS0014005 Camellia sinensis var. sinensis HOM05D000509 ORTHO05D006393 7.2e-14 81.3 91 51.6
MD07G1137000 Malus domestica HOM05D000509 ORTHO05D006393 7.2e-14 81.3 86 55.8
Actinidia12704 Actinidia chinensis HOM05D000509 ORTHO05D006393 9.3e-14 80.9 94 46.8
CSS0014656 Camellia sinensis var. sinensis HOM05D000509 ORTHO05D006393 9.3e-14 80.9 91 51.6
QL93p0259_0027 Quercus lobata HOM05D000509 ORTHO05D006393 9.3e-14 80.9 101 46.5
Phvul.008G065500 Phaseolus vulgaris HOM05D000509 ORTHO05D006393 1.2e-13 80.5 101 48.5
Gorai.005G030400 Gossypium raimondii HOM05D000509 ORTHO05D006393 1.6e-13 80.1 115 43.5
Lalb_Chr03g0038131 Lupinus albus HOM05D000509 ORTHO05D006393 1.6e-13 80.1 102 49.0
QL01p005382 Quercus lobata HOM05D000509 ORTHO05D006393 2.7e-13 79.3 101 45.5
Gohir.A02G020500 Gossypium hirsutum HOM05D000509 ORTHO05D006393 3.6e-13 79.0 115 43.5
Gohir.A08G013720 Gossypium hirsutum HOM05D000509 ORTHO05D006393 3.6e-13 79.0 115 43.5
BcaC09g52246 Brassica carinata HOM05D000509 ORTHO05D006393 4.6e-13 78.6 64 73.4
Gohir.D02G024500 Gossypium hirsutum HOM05D000509 ORTHO05D006393 4.6e-13 78.6 115 42.6
Potri.016G069200 Populus trichocarpa HOM05D000509 ORTHO05D006393 4.6e-13 78.6 87 51.7
Sabra02G0116600 Salix brachista HOM05D000509 ORTHO05D006393 4.6e-13 78.6 99 44.4
C05p38620 Brassica napus HOM05D000770 ORTHO05D000586 1.0e-12 77.4 51 84.3
Dinv32484 Davidia involucrata HOM05D000509 ORTHO05D006393 1.0e-12 77.4 106 43.4
FvH4_7g14280 Fragaria vesca HOM05D000509 ORTHO05D006393 1.0e-12 77.4 87 55.2
FAN10G1528 Fragaria x ananassa HOM05D000509 ORTHO05D006393 1.0e-12 77.4 87 55.2
FAN10G1645 Fragaria x ananassa HOM05D000509 ORTHO05D006393 1.0e-12 77.4 87 55.2
Lj1g0015308 Lotus japonicus HOM05D000509 ORTHO05D006393 1.8e-12 76.6 98 46.9
RcHm_v2.0_Chr1g0355271 Rosa chinensis HOM05D000509 ORTHO05D006393 1.8e-12 76.6 87 55.2
MBI17_g24690_MAGBIO Magnolia biondii HOM05D000509 ORTHO05D006393 3.9e-12 75.5 90 43.3
Rhsim07G0117300 Rhododendron simsii HOM05D000509 ORTHO05D006393 3.9e-12 75.5 87 48.3
Rhsim07G0117600 Rhododendron simsii HOM05D000509 ORTHO05D006393 5.1e-12 75.1 80 48.8
Aqoxy2G02281 Aquilegia oxysepala HOM05D000509 ORTHO05D006393 6.7e-12 74.7 120 39.2
FAN03G2840 Fragaria x ananassa HOM05D000509 ORTHO05D006393 6.7e-12 74.7 87 54.0
Manes.10G122200 Manihot esculenta HOM05D000509 ORTHO05D006393 6.7e-12 74.7 93 48.4
TAR636G2420 Trochodendron aralioides HOM05D000509 ORTHO05D006393 6.7e-12 74.7 82 48.8
Manes.07G019100 Manihot esculenta HOM05D000509 ORTHO05D006393 8.8e-12 74.3 97 44.3
QL08p048801 Quercus lobata HOM05D000509 ORTHO05D006393 1.5e-11 73.6 99 52.5
QL10p007195 Quercus lobata HOM05D000509 ORTHO05D006393 1.5e-11 73.6 78 51.3
GSVIVG01003391001 Vitis vinifera HOM05D000509 ORTHO05D006393 1.5e-11 73.6 56 66.1
Psat3g108360 Pisum sativum HOM05D000509 ORTHO05D006393 3.3e-11 72.4 101 44.6
Actinidia33421 Actinidia chinensis HOM05D001542 ORTHO05D001416 4.3e-11 72.0 94 41.5
Ah.04g163760 Amaranthus hybridus HOM05D000509 ORTHO05D006393 4.3e-11 72.0 111 42.3
Sed0001004 Sechium edule HOM05D000509 ORTHO05D006393 7.4e-11 71.2 97 42.3
EL10Ac8g20190 Beta vulgaris HOM05D000509 ORTHO05D006393 9.7e-11 70.9 117 41.0
Hund14886 Selenicereus undatus HOM05D000509 ORTHO05D006393 9.7e-11 70.9 171 35.1
TPR.G37720 Trifolium pratense HOM05D000509 ORTHO05D006393 9.7e-11 70.9 68 57.4
CAN.G78.80 Capsicum annuum HOM05D000509 ORTHO05D006393 3.7e-10 68.9 126 38.1
MELO3C021209.2 Cucumis melo HOM05D000509 ORTHO05D006393 3.7e-10 68.9 90 43.3
FAN06G1484 Fragaria x ananassa HOM05D000509 ORTHO05D006393 3.7e-10 68.9 78 55.1
FAN06G3105 Fragaria x ananassa HOM05D000509 ORTHO05D006393 3.7e-10 68.9 78 55.1
AUR62004883 Chenopodium quinoa HOM05D000509 ORTHO05D006393 6.3e-10 68.2 111 39.6
Nitab4.5_0000583g0080 Nicotiana tabacum HOM05D000509 ORTHO05D006393 8.2e-10 67.8 103 41.7
EL10Ac4g09051 Beta vulgaris HOM05D000509 ORTHO05D006393 1.1e-09 67.4 112 39.3
CsaV3_6G000560 Cucumis sativus L. HOM05D000509 ORTHO05D006393 1.1e-09 67.4 124 45.2
MBI17_g24691_MAGBIO Magnolia biondii HOM05D000509 ORTHO05D006393 1.1e-09 67.4 99 41.4
Medtr7g077710 Medicago truncatula HOM05D000509 ORTHO05D006393 1.1e-09 67.4 95 42.1
ECA233G2837 Erigeron canadensis HOM05D000509 ORTHO05D006393 1.4e-09 67.0 119 37.8
Medtr8g095630 Medicago truncatula HOM05D000509 ORTHO05D006393 1.4e-09 67.0 95 41.1
vmacro20943 Vaccinium macrocarpon HOM05D000509 ORTHO05D006393 1.4e-09 67.0 74 47.3
AUR62001076 Chenopodium quinoa HOM05D000509 ORTHO05D006393 4.1e-09 65.5 75 46.7
Solyc01g094630.3 Solanum lycopersicum HOM05D000509 ORTHO05D006393 4.1e-09 65.5 105 41.0
PSO782G0796 Papaver somniferum HOM05D000509 ORTHO05D006393 5.3e-09 65.1 89 44.9
PSO478G1119 Papaver somniferum HOM05D000509 ORTHO05D006393 6.9e-09 64.7 81 44.4
Nn6g33420 Nelumbo nucifera HOM05D000509 ORTHO05D006393 9.1e-09 64.3 117 38.5
Sopen01g038440 Solanum pennellii HOM05D000509 ORTHO05D006393 9.1e-09 64.3 105 41.0
FAN01G0359 Fragaria x ananassa HOM05D000509 ORTHO05D006393 1.5e-08 63.5 87 49.4
QL11p053603 Quercus lobata HOM05D000509 ORTHO05D006393 2.6e-08 62.8 71 49.3
Lsat_1_v5_gn_8_97941 Lactuca sativa HOM05D002211 ORTHO05D002206 3.4e-08 62.4 114 37.7
PGSC0003DMG400000042 Solanum tuberosum HOM05D000509 ORTHO05D006393 3.4e-08 62.4 97 42.3
Rhsim07G0118400 Rhododendron simsii HOM05D000509 ORTHO05D006393 4.5e-08 62.0 71 47.9
CANSAT56G2260 Cannabis sativa HOM05D000509 ORTHO05D006393 5.9e-08 61.6 119 38.7
MSTRG.20833 Avicennia marina HOM05D000509 ORTHO05D006393 1.0e-07 60.8 117 37.6
SalBow6G4776 Salvia bowleyana HOM05D000509 ORTHO05D006393 1.7e-07 60.1 120 37.5
Ah.12g064210 Amaranthus hybridus HOM05D000509 ORTHO05D006393 2.2e-07 59.7 90 42.2
Nitab4.5_0006762g0030 Nicotiana tabacum HOM05D000509 ORTHO05D006393 2.2e-07 59.7 107 39.3
ClCG06G003680 Citrullus lanatus HOM05D000509 ORTHO05D006393 2.9e-07 59.3 94 40.4
unitig_0.g1262 Utricularia gibba HOM05D000509 ORTHO05D006393 2.9e-07 59.3 94 38.3
Zm00001eb039300 Zea mays HOM05D000509 ORTHO05D006393 2.9e-07 59.3 120 35.0
Glyma.09G259300 Glycine max HOM05D000509 ORTHO05D006393 3.8e-07 58.9 63 55.6
Migut.B01755 Erythranthe guttata HOM05D000509 ORTHO05D006393 5.0e-07 58.5 92 41.3
SGA_v2.0_scaffold95G28834 Striga asiatica HOM05D000509 ORTHO05D006393 1.1e-06 57.4 89 40.4
Cc02_g38030 Coffea canephora HOM05D000509 ORTHO05D006393 1.4e-06 57.0 94 39.4
Peaxi162Scf00020g00322 Petunia axillaris HOM05D000509 ORTHO05D006393 1.9e-06 56.6 79 41.8
Eucgr.L01454 Eucalyptus grandis HOM05D000509 ORTHO05D006393 4.2e-06 55.5 66 48.5
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 5.5e-06 55.1 111 35.1


User provided reference genes

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