Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p36210 Brassica napus HOM05D003942 ORTHO05D004527 7.1e-226 786.9 404 100.0
BolC8t51203H Brassica oleracea HOM05D003942 ORTHO05D004527 2.1e-225 785.4 404 99.8
BraA09t40766Z Brassica rapa HOM05D003942 ORTHO05D004527 5.5e-218 760.8 405 96.5
A09p53400 Brassica napus HOM05D003942 ORTHO05D004527 3.0e-216 755.0 405 96.3
AL5G43590 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 1.9e-202 709.1 411 88.6
Sp5g02060 Schrenkiella parvula HOM05D003942 ORTHO05D004527 4.2e-202 708.0 411 89.3
Thhalv10006010m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 1.6e-201 706.1 405 89.4
A04p01160 Brassica napus HOM05D003942 ORTHO05D004527 1.1e-199 699.9 411 89.1
BraA04t15833Z Brassica rapa HOM05D003942 ORTHO05D004527 1.1e-199 699.9 411 89.1
Carub.0005s2799 Capsella rubella HOM05D003942 ORTHO05D004527 3.7e-198 694.9 411 86.4
BcaC07g40631 Brassica carinata HOM05D003942 ORTHO05D004527 1.4e-197 693.0 405 88.4
C04p31390 Brassica napus HOM05D003942 ORTHO05D004527 5.9e-196 687.6 408 87.7
BolC4t24688H Brassica oleracea HOM05D003942 ORTHO05D004527 2.9e-195 685.3 408 87.3
Aa31LG10G15570 Aethionema arabicum HOM05D003942 ORTHO05D004527 4.2e-194 681.4 405 85.2
BcaC02g10219 Brassica carinata HOM05D003942 ORTHO05D004527 2.7e-185 652.1 408 84.6
BcaC09g52244 Brassica carinata HOM05D003942 ORTHO05D004527 9.1e-181 637.1 408 83.1
THA.LOC104817290 Tarenaya hassleriana HOM05D003942 ORTHO05D004527 1.2e-180 636.7 412 78.4
Thhalv10001467m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 8.3e-174 614.0 412 76.9
Sp4g27940 Schrenkiella parvula HOM05D003942 ORTHO05D004527 2.5e-170 602.4 412 75.7
Aa31LG1G27300 Aethionema arabicum HOM05D003942 ORTHO05D004527 4.0e-168 595.1 412 75.0
BolC4t28689H Brassica oleracea HOM05D003942 ORTHO05D004527 7.5e-167 590.9 411 74.7
BcaC02g07065 Brassica carinata HOM05D003942 ORTHO05D004527 1.3e-166 590.1 414 75.4
C04p71910 Brassica napus HOM05D003942 ORTHO05D004527 1.3e-166 590.1 411 75.2
CARHR141140 Cardamine hirsuta HOM05D003942 ORTHO05D004527 4.9e-166 588.2 412 74.8
AL4G45080 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 2.4e-165 585.9 414 74.4
Carub.0004s2857 Capsella rubella HOM05D003942 ORTHO05D004527 2.4e-165 585.9 414 73.7
BraA04t18872Z Brassica rapa HOM05D003942 ORTHO05D004527 9.2e-165 583.9 412 74.8
A04p34110 Brassica napus HOM05D003942 ORTHO05D004527 3.8e-163 578.6 412 74.5
TAR629G1832 Trochodendron aralioides HOM05D003942 ORTHO05D004527 1.5e-151 540.0 404 69.3
Dinv32469 Davidia involucrata HOM05D003942 ORTHO05D004527 1.4e-149 533.5 404 68.6
Atru.chr5.464 Acer truncatum HOM05D003942 ORTHO05D004527 5.4e-149 531.6 361 73.1
Cpa.g.sc18.243 Carica papaya HOM05D003942 ORTHO05D004527 1.2e-148 530.4 406 68.7
Gorai.007G098800 Gossypium raimondii HOM05D003942 ORTHO05D004527 2.7e-148 529.3 411 67.4
Thecc.01G360500 Theobroma cacao HOM05D003942 ORTHO05D004527 4.6e-148 528.5 412 67.0
COL.COLO4_12700 Corchorus olitorius HOM05D003942 ORTHO05D004527 1.0e-147 527.3 415 65.5
Gohir.A11G088200 Gossypium hirsutum HOM05D003942 ORTHO05D004527 1.9e-146 523.1 411 66.9
Cfa003938 Carpinus fangiana HOM05D003942 ORTHO05D004527 1.6e-145 520.0 399 65.9
MBI18_g25515_MAGBIO Magnolia biondii HOM05D003942 ORTHO05D004527 1.6e-145 520.0 399 67.2
QL08p049021 Quercus lobata HOM05D003942 ORTHO05D004527 6.2e-145 518.1 408 64.7
Potri.014G082900 Populus trichocarpa HOM05D003942 ORTHO05D004527 8.1e-145 517.7 404 66.3
CiPaw.02G030000 Carya illinoinensis HOM05D003942 ORTHO05D004527 1.1e-144 517.3 351 70.7
Duzib133G0298 Durio zibethinus HOM05D003942 ORTHO05D004527 1.4e-144 516.9 412 66.5
Actinidia10022 Actinidia chinensis HOM05D003942 ORTHO05D004527 1.8e-144 516.5 375 70.1
CANSAT56G2580 Cannabis sativa HOM05D003942 ORTHO05D004527 2.3e-144 516.2 403 67.5
CSS0041241 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 4.0e-144 515.4 408 66.2
CSS0049620 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 4.0e-144 515.4 408 66.2
TWI59G0555 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 2.6e-143 512.7 403 64.3
AT2G45870 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 5.8e-143 511.5 356 75.3
Peaxi162Scf00191g01422 Petunia axillaris HOM05D003942 ORTHO05D004527 5.8e-143 511.5 407 65.4
TAR375G0209 Trochodendron aralioides HOM05D003942 ORTHO05D004527 2.9e-142 509.2 357 71.1
Manes.05G036000 Manihot esculenta HOM05D003942 ORTHO05D004527 3.7e-142 508.8 351 72.1
Nitab4.5_0001702g0090 Nicotiana tabacum HOM05D003942 ORTHO05D004527 4.9e-142 508.4 401 65.8
Sabra14G0060100 Salix brachista HOM05D003942 ORTHO05D004527 8.3e-142 507.7 404 65.3
TWI23G1005 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 8.3e-142 507.7 408 63.7
Ciclev10020374m.g Citrus clementina HOM05D003942 ORTHO05D004527 1.1e-141 507.3 357 71.7
MD07G1139000 Malus domestica HOM05D003942 ORTHO05D004527 3.2e-141 505.8 353 71.1
CiPaw.01G059900 Carya illinoinensis HOM05D003942 ORTHO05D004527 5.4e-141 505.0 401 64.6
PGR042G2566 Punica granatum HOM05D003942 ORTHO05D004527 5.4e-141 505.0 383 66.8
GSVIVG01026895001 Vitis vinifera HOM05D003942 ORTHO05D004527 5.4e-141 505.0 333 76.0
Nitab4.5_0008050g0040 Nicotiana tabacum HOM05D003942 ORTHO05D004527 9.2e-141 504.2 402 65.9
CAN.G399.13 Capsicum annuum HOM05D003942 ORTHO05D004527 2.1e-140 503.1 395 65.8
FAN06G2309 Fragaria x ananassa HOM05D003942 ORTHO05D004527 3.5e-140 502.3 400 64.2
Eucgr.E00157 Eucalyptus grandis HOM05D003942 ORTHO05D004527 4.6e-140 501.9 354 69.5
FAN01G0250 Fragaria x ananassa HOM05D003942 ORTHO05D004527 6.0e-140 501.5 362 68.8
FvH4_7g14170 Fragaria vesca HOM05D003942 ORTHO05D004527 1.0e-139 500.7 400 64.0
Cc02_g37870 Coffea canephora HOM05D003942 ORTHO05D004527 1.3e-139 500.4 405 63.7
FAN10G4090 Fragaria x ananassa HOM05D003942 ORTHO05D004527 3.9e-139 498.8 353 70.3
FAN06G3470 Fragaria x ananassa HOM05D003942 ORTHO05D004527 6.6e-139 498.0 400 64.0
Hund27285 Selenicereus undatus HOM05D003942 ORTHO05D004527 6.6e-139 498.0 352 70.7
FAN03G2475 Fragaria x ananassa HOM05D003942 ORTHO05D004527 8.6e-139 497.7 362 68.0
Rhsim07G0016400 Rhododendron simsii HOM05D003942 ORTHO05D004527 8.6e-139 497.7 407 63.1
RcHm_v2.0_Chr1g0355071 Rosa chinensis HOM05D003942 ORTHO05D004527 8.6e-139 497.7 408 63.7
MSTRG.4859 Avicennia marina HOM05D003942 ORTHO05D004527 2.5e-138 496.1 369 66.7
Sopen05g028240 Solanum pennellii HOM05D003942 ORTHO05D004527 3.3e-138 495.7 396 64.6
PGSC0003DMG400021644 Solanum tuberosum HOM05D003942 ORTHO05D004527 3.3e-138 495.7 396 64.9
CDE09G0298 Ceratophyllum demersum HOM05D003942 ORTHO05D004527 5.6e-138 495.0 352 69.6
Solyc05g049900.3 Solanum lycopersicum HOM05D003942 ORTHO05D004527 5.6e-138 495.0 396 64.6
Prupe.2G168100 Prunus persica HOM05D003942 ORTHO05D004527 1.2e-137 493.8 405 62.5
MD01G1057600 Malus domestica HOM05D003942 ORTHO05D004527 8.1e-137 491.1 408 62.7
Glyma.03G010800 Glycine max HOM05D003942 ORTHO05D004527 3.4e-135 485.7 372 65.3
Glyma.07G071900 Glycine max HOM05D003942 ORTHO05D004527 3.4e-135 485.7 400 62.8
HanXRQChr16g0522811 Helianthus annuus HOM05D003942 ORTHO05D004527 4.4e-135 485.3 351 69.2
AUR62022550 Chenopodium quinoa HOM05D003942 ORTHO05D004527 1.3e-134 483.8 349 65.3
Migut.N01440 Erythranthe guttata HOM05D003942 ORTHO05D004527 1.3e-134 483.8 403 61.3
Phvul.010G097300 Phaseolus vulgaris HOM05D003942 ORTHO05D004527 1.7e-134 483.4 370 64.9
Psat4g154400 Pisum sativum HOM05D003942 ORTHO05D004527 2.2e-134 483.0 381 64.8
Lalb_Chr03g0038211 Lupinus albus HOM05D003942 ORTHO05D004527 4.9e-134 481.9 394 63.7
VMungo0331G0006 Vigna mungo HOM05D003942 ORTHO05D004527 6.4e-134 481.5 371 65.0
Lj9A582T85 Lonicera japonica HOM05D003942 ORTHO05D004527 8.4e-134 481.1 475 55.4
Ca_23643_v3 Cicer arietinum L. HOM05D003942 ORTHO05D004527 1.4e-133 480.3 356 66.3
Oeu020562.1 Olea europaea HOM05D003942 ORTHO05D004527 3.2e-133 479.2 329 72.9
Aqoxy5G04009 Aquilegia oxysepala HOM05D003942 ORTHO05D004527 4.1e-133 478.8 361 67.9
Lalb_Chr04g0256871 Lupinus albus HOM05D003942 ORTHO05D004527 7.1e-133 478.0 350 68.0
SGA_v2.0_scaffold43G16422 Striga asiatica HOM05D003942 ORTHO05D004527 7.1e-133 478.0 346 67.6
DCAR_015969 Daucus carota HOM05D003942 ORTHO05D004527 9.2e-133 477.6 397 63.0
SalBow5G2271 Salvia bowleyana HOM05D003942 ORTHO05D004527 2.1e-132 476.5 381 63.5
Haze_15488 Corylus avellana HOM05D003942 ORTHO05D004527 3.5e-132 475.7 399 61.9
Lsat_1_v5_gn_4_36221 Lactuca sativa HOM05D003942 ORTHO05D004527 4.6e-132 475.3 339 69.9
Lsat_1_v5_gn_3_137060 Lactuca sativa HOM05D003942 ORTHO05D004527 6.0e-132 474.9 400 62.8
AT3G61320 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 7.8e-132 474.6 283 86.9
AUR62004344 Chenopodium quinoa HOM05D003942 ORTHO05D004527 1.3e-131 473.8 349 64.2
Lj3g0006137 Lotus japonicus HOM05D003942 ORTHO05D004527 2.3e-131 473.0 379 63.9
Ah.05g180690 Amaranthus hybridus HOM05D003942 ORTHO05D004527 1.9e-130 469.9 398 59.5
HanXRQChr13g0426521 Helianthus annuus HOM05D003942 ORTHO05D004527 2.4e-128 463.0 352 65.6
Medtr8g031000 Medicago truncatula HOM05D003942 ORTHO05D004527 2.6e-127 459.5 330 69.1
TPR.G15979 Trifolium pratense HOM05D003942 ORTHO05D004527 3.4e-127 459.1 329 68.4
arahy.Tifrunner.gnm1.ann1.2H0UDK Arachis hypogaea HOM05D003942 ORTHO05D004527 9.9e-127 457.6 385 61.0
arahy.Tifrunner.gnm1.ann1.Q5YAPI Arachis hypogaea HOM05D003942 ORTHO05D004527 9.9e-127 457.6 385 61.3
unitig_8.g3394 Utricularia gibba HOM05D003942 ORTHO05D004527 7.8e-124 448.0 354 64.1
Sc23g0002980 Simmondsia chinensis HOM05D003942 ORTHO05D004527 8.1e-121 438.0 389 60.2
ECA240G2096 Erigeron canadensis HOM05D003942 ORTHO05D004527 2.4e-120 436.4 333 66.1
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 6.9e-112 408.3 301 65.8
Os03g0106000 Oryza sativa ssp. japonica HOM05D003942 ORTHO05D004527 6.9e-112 408.3 341 61.6
HPP92_006558 Vanilla planifolia HOM05D003942 ORTHO05D004527 2.9e-110 402.9 358 58.4
Zm00001eb000510 Zea mays HOM05D003942 ORTHO05D004527 1.6e-108 397.1 352 59.4
SEGI_25793 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 2.7e-108 396.4 349 56.4
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 1.3e-105 387.5 286 69.2
Nn1g01512 Nelumbo nucifera HOM05D003942 ORTHO05D004527 2.6e-103 379.8 399 53.1
SEGI_35716 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 3.4e-103 379.4 326 57.7
Pp3c4_15850 Physcomitrium patens HOM05D003942 ORTHO05D004527 7.6e-103 378.3 344 54.7
Pp3c3_22870 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.1e-100 370.2 343 53.9
Mapoly0071s0037 Marchantia polymorpha HOM05D003942 ORTHO05D004527 1.8e-99 367.1 346 52.6
CARHR171630 Cardamine hirsuta HOM05D003942 ORTHO05D004527 8.7e-99 364.8 229 85.2
Duzib138G1448 Durio zibethinus HOM05D003942 ORTHO05D004527 3.7e-97 359.4 406 51.5
SMO364G0338 Selaginella moellendorffii HOM05D003942 ORTHO05D004527 3.2e-93 346.3 317 51.4
Gohir.D11G092500 Gossypium hirsutum HOM05D003942 ORTHO05D004527 2.1e-92 343.6 297 62.6
vmacro13277 Vaccinium macrocarpon HOM05D003942 ORTHO05D004527 7.7e-79 298.5 364 46.4
ATR0680G085 Amborella trichopoda HOM05D003942 ORTHO05D004527 1.4e-77 294.3 334 50.0
AagrBONN_evm.TU.Sc2ySwM_344.3805 Anthoceros agrestis HOM05D003942 ORTHO05D004527 3.9e-75 286.2 321 45.8
Mapoly0009s0131 Marchantia polymorpha HOM05D003942 ORTHO05D004527 8.2e-73 278.5 316 43.7
AagrBONN_evm.TU.Sc2ySwM_228.958 Anthoceros agrestis HOM05D003942 ORTHO05D004527 5.9e-71 272.3 315 45.1
Pp3c2_13700 Physcomitrium patens HOM05D003942 ORTHO05D004527 6.5e-70 268.9 311 45.3
CBR_g44610 Chara braunii HOM05D000505 ORTHO05D000301 8.8e-67 258.5 315 44.1
C05p09980 Brassica napus HOM05D003942 ORTHO05D004527 1.7e-65 254.2 203 68.0
AagrBONN_evm.TU.Sc2ySwM_362.1957 Anthoceros agrestis HOM05D003942 ORTHO05D004527 6.3e-65 252.3 293 44.4
Pp3c1_34600 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.4e-64 251.1 308 41.2
FAN10G2852 Fragaria x ananassa HOM05D003942 ORTHO05D004527 4.5e-63 246.1 191 67.0
MD01G1202300 Malus domestica HOM05D003942 ORTHO05D004527 6.5e-62 242.3 242 52.9
Pp3c11_9440 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.5e-61 241.1 305 39.3
Pp3c1_34560 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.5e-61 241.1 297 42.8
Pp3c1_3670 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.5e-61 241.1 324 39.2
Pp3c6_24250 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.4e-59 234.6 291 40.9
HPP92_011356 Vanilla planifolia HOM05D003942 ORTHO05D004527 6.8e-59 232.3 179 63.7
Pp3c14_6660 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.4e-56 224.6 268 41.8
Oeu020563.1 Olea europaea HOM05D003942 ORTHO05D004527 4.1e-56 223.0 150 76.7
CBR_g772 Chara braunii HOM05D003942 ORTHO05D004527 9.5e-53 211.8 335 37.6
AagrBONN_evm.TU.Sc2ySwM_228.2628 Anthoceros agrestis HOM05D003942 ORTHO05D004527 2.7e-47 193.7 152 55.9
Cre16.g662600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 4.7e-44 183.0 314 34.4
Cre06.g277650 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 8.9e-43 178.7 326 32.8
Cre16.g663450 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.5e-42 177.9 307 34.9
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 4.9e-41 172.9 122 74.6
SEGI_34263 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 1.1e-40 171.8 163 56.4
Cre16.g663400 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.4e-40 171.4 314 33.4
BcaB02g11262 Brassica carinata HOM05D003942 ORTHO05D004527 1.9e-40 171.0 113 77.0
CBR_g38187 Chara braunii HOM05D003942 ORTHO05D004527 3.2e-40 170.2 219 43.8
Cre11.g474700 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.3e-38 164.1 323 32.2
HPP92_011355 Vanilla planifolia HOM05D003942 ORTHO05D004527 3.0e-38 163.7 138 58.0
Cre06.g261750 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.9e-37 161.0 313 29.1
PRCOL_00004040 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 8.3e-33 145.6 301 32.9
Cre07.g355300 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.3e-30 138.3 305 29.2
Cre01.g038100 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.7e-30 137.9 313 28.4
PRCOL_00006054 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 8.1e-28 129.0 294 28.9
Pp3c11_6680 Physcomitrium patens HOM05D003942 ORTHO05D004527 5.8e-26 122.9 103 53.4
PRCOL_00003097 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 5.8e-26 122.9 294 29.3
Oeu020564.1 Olea europaea HOM05D003942 ORTHO05D004527 1.1e-24 118.6 77 77.9
FAN10G3156 Fragaria x ananassa HOM05D000449 ORTHO05D004527 7.1e-24 115.9 81 74.1
MCO01G232 Micromonas commoda HOM05D003942 ORTHO05D004527 2.1e-23 114.4 330 29.4
SEGI_01331 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 2.7e-23 114.0 100 57.0
Cre03.g199600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 3.5e-23 113.6 219 31.5
PRCOL_00003548 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 6.0e-23 112.8 314 28.3
Pp3c6_17920 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.9e-21 107.8 189 33.3
PRCOL_00005764 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 5.6e-21 106.3 348 28.7
MCO09G357 Micromonas commoda HOM05D003942 ORTHO05D004527 1.2e-18 98.6 352 27.3
PRCOL_00004398 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 5.4e-16 89.7 306 26.5
MCO01G007 Micromonas commoda HOM05D003942 ORTHO05D004527 1.6e-15 88.2 300 25.3
PSO478G4509 Papaver somniferum HOM05D003942 ORTHO05D004527 1.4e-11 75.1 62 61.3
Pp3c3_14710 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.5e-10 71.6 147 32.7


User provided reference genes

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